HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SD6 TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM HOMO SAPIENS BOUND TITLE 2 TO NADP AND SDDC INHIBITOR SDDC-892 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN DHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HOMO SAPIENS, DHFR, NADP, FOLATE, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 2 INHIBITOR COMPLEX, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 02-MAR-22 5SD6 1 KEYWDS REVDAT 1 09-FEB-22 5SD6 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III, JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM HOMO JRNL TITL 2 SAPIENS BOUND TO NADP AND SDDC INHIBITOR SDDC-892 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2481 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 22053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1514 - 5.1785 0.94 1512 160 0.1811 0.2007 REMARK 3 2 5.1785 - 4.1117 0.98 1455 158 0.1340 0.1648 REMARK 3 3 4.1117 - 3.5923 0.97 1442 150 0.1363 0.1874 REMARK 3 4 3.5923 - 3.2640 0.98 1445 133 0.1562 0.1778 REMARK 3 5 3.2640 - 3.0301 0.98 1439 141 0.1784 0.2249 REMARK 3 6 3.0301 - 2.8515 0.98 1403 149 0.1794 0.2251 REMARK 3 7 2.8515 - 2.7088 0.98 1413 155 0.1813 0.2099 REMARK 3 8 2.7088 - 2.5909 0.99 1411 154 0.1850 0.2579 REMARK 3 9 2.5909 - 2.4912 0.99 1428 130 0.1907 0.2440 REMARK 3 10 2.4912 - 2.4052 0.99 1410 143 0.1882 0.2200 REMARK 3 11 2.4052 - 2.3300 0.99 1442 118 0.1883 0.2265 REMARK 3 12 2.3300 - 2.2634 0.99 1446 126 0.1909 0.2310 REMARK 3 13 2.2634 - 2.2038 0.99 1433 132 0.2041 0.2707 REMARK 3 14 2.2038 - 2.1501 0.99 1388 137 0.2298 0.2835 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1683 REMARK 3 ANGLE : 0.946 2296 REMARK 3 CHIRALITY : 0.061 243 REMARK 3 PLANARITY : 0.005 286 REMARK 3 DIHEDRAL : 9.632 1702 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3210 14.3987 -22.0108 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.2095 REMARK 3 T33: 0.2206 T12: -0.0031 REMARK 3 T13: 0.0387 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 7.7450 L22: 4.7449 REMARK 3 L33: 6.1780 L12: -0.0798 REMARK 3 L13: 1.5715 L23: -1.0104 REMARK 3 S TENSOR REMARK 3 S11: 0.0685 S12: -0.1506 S13: -0.4194 REMARK 3 S21: 0.0891 S22: 0.0840 S23: 0.3770 REMARK 3 S31: -0.1418 S32: -0.2557 S33: -0.1099 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8326 11.1878 -32.7188 REMARK 3 T TENSOR REMARK 3 T11: 0.2683 T22: 0.2806 REMARK 3 T33: 0.2084 T12: -0.0390 REMARK 3 T13: 0.0150 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 3.2157 L22: 3.9089 REMARK 3 L33: 6.6319 L12: -2.0689 REMARK 3 L13: 4.0781 L23: -3.2726 REMARK 3 S TENSOR REMARK 3 S11: -0.1636 S12: -0.0352 S13: -0.1117 REMARK 3 S21: -0.5234 S22: 0.0569 S23: -0.0713 REMARK 3 S31: 0.2629 S32: -0.0362 S33: 0.1561 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5933 -0.0018 -25.5547 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.1495 REMARK 3 T33: 0.1688 T12: -0.0222 REMARK 3 T13: -0.0399 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 5.8776 L22: 5.7438 REMARK 3 L33: 6.8111 L12: -1.7012 REMARK 3 L13: -0.5566 L23: -0.6980 REMARK 3 S TENSOR REMARK 3 S11: 0.1358 S12: 0.2289 S13: -0.2633 REMARK 3 S21: -0.3621 S22: 0.0083 S23: 0.1243 REMARK 3 S31: 0.4021 S32: -0.1609 S33: -0.1283 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3474 -8.0014 -16.1712 REMARK 3 T TENSOR REMARK 3 T11: 0.3196 T22: 0.2873 REMARK 3 T33: 0.3310 T12: 0.0273 REMARK 3 T13: -0.0197 T23: 0.1125 REMARK 3 L TENSOR REMARK 3 L11: 6.8724 L22: 2.7875 REMARK 3 L33: 9.0352 L12: 3.3646 REMARK 3 L13: 4.5396 L23: 4.6154 REMARK 3 S TENSOR REMARK 3 S11: 0.2818 S12: -0.0294 S13: -0.4411 REMARK 3 S21: -0.0284 S22: -0.0518 S23: 0.4260 REMARK 3 S31: 0.7719 S32: -0.3620 S33: -0.1840 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2753 1.3198 -15.7284 REMARK 3 T TENSOR REMARK 3 T11: 0.2034 T22: 0.2513 REMARK 3 T33: 0.1986 T12: -0.0312 REMARK 3 T13: -0.0216 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 5.3777 L22: 8.1306 REMARK 3 L33: 4.4996 L12: -2.2470 REMARK 3 L13: 0.9406 L23: -3.4124 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: -0.1330 S13: -0.0520 REMARK 3 S21: 0.1040 S22: -0.0304 S23: -0.3841 REMARK 3 S31: 0.0609 S32: 0.2608 S33: 0.0667 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9978 15.5468 -17.9682 REMARK 3 T TENSOR REMARK 3 T11: 0.3325 T22: 0.3165 REMARK 3 T33: 0.3840 T12: -0.0753 REMARK 3 T13: -0.0827 T23: 0.0561 REMARK 3 L TENSOR REMARK 3 L11: 3.8782 L22: 5.4853 REMARK 3 L33: 8.9322 L12: -4.1633 REMARK 3 L13: 4.3393 L23: -2.6948 REMARK 3 S TENSOR REMARK 3 S11: 0.4435 S12: -0.6915 S13: -0.6372 REMARK 3 S21: 0.1671 S22: 0.0110 S23: -0.0983 REMARK 3 S31: 0.2982 S32: -0.0957 S33: -0.5019 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.8293 18.8248 -19.8663 REMARK 3 T TENSOR REMARK 3 T11: 0.4109 T22: 0.4079 REMARK 3 T33: 0.3714 T12: 0.1218 REMARK 3 T13: 0.0936 T23: -0.0450 REMARK 3 L TENSOR REMARK 3 L11: 7.5628 L22: 3.8374 REMARK 3 L33: 3.5206 L12: 3.7579 REMARK 3 L13: -2.9410 L23: -3.3537 REMARK 3 S TENSOR REMARK 3 S11: 0.3589 S12: -0.4089 S13: 0.4254 REMARK 3 S21: 0.6149 S22: 0.0933 S23: 0.8271 REMARK 3 S31: -0.5862 S32: -0.3811 S33: -0.4681 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7643 22.4401 -23.6684 REMARK 3 T TENSOR REMARK 3 T11: 0.2392 T22: 0.2243 REMARK 3 T33: 0.1993 T12: 0.0453 REMARK 3 T13: 0.0034 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 4.2839 L22: 4.6676 REMARK 3 L33: 3.9311 L12: 1.9251 REMARK 3 L13: 2.0300 L23: 0.8889 REMARK 3 S TENSOR REMARK 3 S11: 0.1594 S12: -0.3624 S13: 0.1644 REMARK 3 S21: 0.2304 S22: 0.0099 S23: 0.0853 REMARK 3 S31: -0.0821 S32: -0.2872 S33: -0.1732 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3250 20.4623 -21.9109 REMARK 3 T TENSOR REMARK 3 T11: 0.2079 T22: 0.2530 REMARK 3 T33: 0.2083 T12: -0.0131 REMARK 3 T13: 0.0493 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 9.3287 L22: 8.2694 REMARK 3 L33: 8.4985 L12: -0.9403 REMARK 3 L13: 4.8701 L23: -1.2550 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: -0.1975 S13: 0.1529 REMARK 3 S21: 0.5060 S22: -0.0340 S23: -0.3587 REMARK 3 S31: -0.0356 S32: 0.5053 S33: -0.0070 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1001404359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22057 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG2 E5 (273901E5): 200MM LITHIUM REMARK 280 SULFATE, 100MM SODIUM ACETATE:ACETIC ACID PH4.5, 20% (W/V) REMARK 280 PEG8000; PROT CONC 26MG/ML, CRYO 20% EG, PUCK OGI6-6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.60500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.09500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.09500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.40750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.09500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.09500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.80250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.09500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.09500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 107.40750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.09500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.09500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.80250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.60500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER, THE SAME AS ASU REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 314 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 GLN A 85 CG CD OE1 NE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 95 CA CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 22 O HOH A 301 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 77 139.98 -171.12 REMARK 500 ASP A 111 -98.39 -94.58 REMARK 500 MET A 140 50.39 -90.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 427 DISTANCE = 6.76 ANGSTROMS DBREF 5SD6 A 1 187 UNP P00374 DYR_HUMAN 1 187 SEQRES 1 A 187 MET VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN SEQRES 2 A 187 ASN MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO SEQRES 3 A 187 PRO LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR SEQRES 4 A 187 THR THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE SEQRES 5 A 187 MET GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN SEQRES 6 A 187 ARG PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG SEQRES 7 A 187 GLU LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER SEQRES 8 A 187 ARG SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO SEQRES 9 A 187 GLU LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY SEQRES 10 A 187 GLY SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY SEQRES 11 A 187 HIS LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE SEQRES 12 A 187 GLU SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS SEQRES 13 A 187 TYR LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP SEQRES 14 A 187 VAL GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL SEQRES 15 A 187 TYR GLU LYS ASN ASP HET NAP A 201 48 HET HXV A 202 29 HET EDO A 203 4 HET EDO A 204 4 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HET CL A 208 1 HET CL A 209 1 HET CL A 210 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM HXV 6-ETHYL-5-(4-{2-[2-(1H-TETRAZOL-5-YL) HETNAM 2 HXV ETHYL]PHENOXY}BUTOXY)PYRIMIDINE-2,4-DIAMINE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HXV C19 H26 N8 O2 FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 SO4 3(O4 S 2-) FORMUL 9 CL 3(CL 1-) FORMUL 12 HOH *127(H2 O) HELIX 1 AA1 LEU A 28 THR A 41 1 14 HELIX 2 AA2 LYS A 55 ILE A 61 1 7 HELIX 3 AA3 PRO A 62 ARG A 66 5 5 HELIX 4 AA4 SER A 93 THR A 101 1 9 HELIX 5 AA5 GLN A 103 ASN A 108 1 6 HELIX 6 AA6 GLY A 118 HIS A 128 1 11 SHEET 1 AA1 8 PHE A 89 SER A 91 0 SHEET 2 AA1 8 ILE A 72 LEU A 76 1 N VAL A 75 O SER A 91 SHEET 3 AA1 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72 SHEET 4 AA1 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50 SHEET 5 AA1 8 LEU A 5 VAL A 11 1 N ASN A 6 O ILE A 115 SHEET 6 AA1 8 HIS A 131 ILE A 139 1 O PHE A 135 N CYS A 7 SHEET 7 AA1 8 ILE A 176 ASN A 186 -1 O LYS A 179 N ARG A 138 SHEET 8 AA1 8 LYS A 158 LEU A 160 -1 N LYS A 158 O GLU A 184 SHEET 1 AA2 8 PHE A 89 SER A 91 0 SHEET 2 AA2 8 ILE A 72 LEU A 76 1 N VAL A 75 O SER A 91 SHEET 3 AA2 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72 SHEET 4 AA2 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50 SHEET 5 AA2 8 LEU A 5 VAL A 11 1 N ASN A 6 O ILE A 115 SHEET 6 AA2 8 HIS A 131 ILE A 139 1 O PHE A 135 N CYS A 7 SHEET 7 AA2 8 ILE A 176 ASN A 186 -1 O LYS A 179 N ARG A 138 SHEET 8 AA2 8 GLN A 171 GLU A 173 -1 N GLN A 171 O TYR A 178 SHEET 1 AA3 2 GLY A 16 GLY A 18 0 SHEET 2 AA3 2 THR A 147 PHE A 148 -1 O THR A 147 N ILE A 17 CISPEP 1 ARG A 66 PRO A 67 0 -6.04 CISPEP 2 ARG A 66 PRO A 67 0 -5.72 CISPEP 3 GLY A 117 GLY A 118 0 2.03 CRYST1 74.190 74.190 143.210 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013479 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006983 0.00000