HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SD7 TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM HOMO SAPIENS BOUND TITLE 2 TO NADP AND SDDC INHIBITOR SDDC-735 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN DHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HOMO SAPIENS, DHFR, NADP, FOLATE, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 2 INHIBITOR COMPLEX, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 02-MAR-22 5SD7 1 KEYWDS REVDAT 1 09-FEB-22 5SD7 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III, JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM HOMO JRNL TITL 2 SAPIENS BOUND TO NADP AND SDDC INHIBITOR SDDC-735 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2443 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3450 - 4.3368 1.00 2778 157 0.1621 0.1736 REMARK 3 2 4.3368 - 3.4428 1.00 2620 160 0.1426 0.1671 REMARK 3 3 3.4428 - 3.0077 1.00 2610 128 0.1723 0.2061 REMARK 3 4 3.0077 - 2.7328 1.00 2587 139 0.1868 0.2078 REMARK 3 5 2.7328 - 2.5369 1.00 2577 127 0.1824 0.2071 REMARK 3 6 2.5369 - 2.3874 1.00 2522 159 0.1753 0.1988 REMARK 3 7 2.3874 - 2.2678 1.00 2554 149 0.1653 0.1820 REMARK 3 8 2.2678 - 2.1691 1.00 2542 130 0.1673 0.2226 REMARK 3 9 2.1691 - 2.0856 1.00 2536 135 0.1691 0.1669 REMARK 3 10 2.0856 - 2.0136 1.00 2520 139 0.1678 0.2338 REMARK 3 11 2.0136 - 1.9507 1.00 2523 132 0.1834 0.1983 REMARK 3 12 1.9507 - 1.8949 1.00 2516 135 0.1936 0.2155 REMARK 3 13 1.8949 - 1.8450 1.00 2507 153 0.2106 0.2396 REMARK 3 14 1.8450 - 1.8000 1.00 2528 121 0.2218 0.2714 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1729 REMARK 3 ANGLE : 0.994 2360 REMARK 3 CHIRALITY : 0.063 246 REMARK 3 PLANARITY : 0.005 293 REMARK 3 DIHEDRAL : 19.364 1030 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6015 12.8245 -26.5452 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.1235 REMARK 3 T33: 0.1551 T12: -0.0015 REMARK 3 T13: 0.0077 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 3.9316 L22: 4.2446 REMARK 3 L33: 4.6524 L12: 0.1638 REMARK 3 L13: 0.3728 L23: -0.0242 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: -0.0511 S13: -0.0539 REMARK 3 S21: 0.0013 S22: 0.0381 S23: 0.2013 REMARK 3 S31: -0.0068 S32: -0.1277 S33: 0.0223 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0014 -1.6776 -20.5853 REMARK 3 T TENSOR REMARK 3 T11: 0.1957 T22: 0.1375 REMARK 3 T33: 0.1535 T12: 0.0088 REMARK 3 T13: 0.0008 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 3.9019 L22: 5.3446 REMARK 3 L33: 4.9186 L12: -0.3969 REMARK 3 L13: -0.1376 L23: -2.3857 REMARK 3 S TENSOR REMARK 3 S11: 0.0946 S12: 0.1520 S13: -0.0603 REMARK 3 S21: -0.1339 S22: 0.0113 S23: 0.0087 REMARK 3 S31: 0.2503 S32: -0.0657 S33: -0.0876 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4119 15.4290 -17.2397 REMARK 3 T TENSOR REMARK 3 T11: 0.2581 T22: 0.1653 REMARK 3 T33: 0.1507 T12: 0.0382 REMARK 3 T13: 0.0168 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 4.8427 L22: 6.0139 REMARK 3 L33: 3.7584 L12: 0.0362 REMARK 3 L13: -0.3525 L23: -1.7667 REMARK 3 S TENSOR REMARK 3 S11: -0.1060 S12: -0.3041 S13: -0.1018 REMARK 3 S21: 0.6599 S22: 0.0698 S23: 0.1110 REMARK 3 S31: -0.1242 S32: -0.1496 S33: 0.0360 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1405 22.4831 -23.3425 REMARK 3 T TENSOR REMARK 3 T11: 0.2300 T22: 0.0754 REMARK 3 T33: 0.1743 T12: 0.0218 REMARK 3 T13: -0.0014 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 6.9194 L22: 3.9302 REMARK 3 L33: 4.0505 L12: 1.2419 REMARK 3 L13: 0.9756 L23: -0.5712 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: -0.2571 S13: 0.1621 REMARK 3 S21: 0.2573 S22: -0.1050 S23: 0.1266 REMARK 3 S31: -0.1413 S32: 0.0269 S33: 0.0424 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9214 20.6908 -21.9656 REMARK 3 T TENSOR REMARK 3 T11: 0.2188 T22: 0.1862 REMARK 3 T33: 0.1965 T12: 0.0316 REMARK 3 T13: -0.0068 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.7805 L22: 5.2976 REMARK 3 L33: 7.6462 L12: 0.9088 REMARK 3 L13: 1.6470 L23: -0.1266 REMARK 3 S TENSOR REMARK 3 S11: -0.0900 S12: -0.0473 S13: 0.1864 REMARK 3 S21: 0.5614 S22: 0.0237 S23: -0.2230 REMARK 3 S31: -0.1621 S32: 0.4393 S33: 0.1380 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1001404360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37963 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 H9 (271587H9): 100MM BIS-TRIS REMARK 280 PH5.5, 25% (W/V) PEG3350, PROT CONC 26MG/ML, CRYO 15% EG, PUCK REMARK 280 YRC3-1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.13500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.97000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.20250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.97000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.06750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.97000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.97000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 108.20250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.97000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.97000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.06750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.13500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER, THE SAME AS ASU REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 379 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 381 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 337 O HOH A 446 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 77 141.39 -174.10 REMARK 500 ASP A 111 -95.00 -98.78 REMARK 500 MET A 140 46.23 -86.18 REMARK 500 ASN A 186 59.68 -155.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 473 DISTANCE = 6.61 ANGSTROMS DBREF 5SD7 A 1 187 UNP P00374 DYR_HUMAN 1 187 SEQRES 1 A 187 MET VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN SEQRES 2 A 187 ASN MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO SEQRES 3 A 187 PRO LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR SEQRES 4 A 187 THR THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE SEQRES 5 A 187 MET GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN SEQRES 6 A 187 ARG PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG SEQRES 7 A 187 GLU LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER SEQRES 8 A 187 ARG SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO SEQRES 9 A 187 GLU LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY SEQRES 10 A 187 GLY SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY SEQRES 11 A 187 HIS LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE SEQRES 12 A 187 GLU SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS SEQRES 13 A 187 TYR LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP SEQRES 14 A 187 VAL GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL SEQRES 15 A 187 TYR GLU LYS ASN ASP HET NAP A 201 48 HET I0E A 202 54 HET PO4 A 203 5 HET PO4 A 204 5 HET PO4 A 205 5 HET PO4 A 206 5 HET CL A 207 1 HET EDO A 208 4 HET EDO A 209 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM I0E (2S)-3-(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 I0E OXY]PROPOXY}PHENYL)-2-METHYLPROPANOIC ACID HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 I0E C19 H26 N4 O4 FORMUL 4 PO4 4(O4 P 3-) FORMUL 8 CL CL 1- FORMUL 9 EDO 2(C2 H6 O2) FORMUL 11 HOH *173(H2 O) HELIX 1 AA1 LEU A 28 THR A 41 1 14 HELIX 2 AA2 LYS A 55 ILE A 61 1 7 HELIX 3 AA3 PRO A 62 ARG A 66 5 5 HELIX 4 AA4 SER A 93 THR A 101 1 9 HELIX 5 AA5 GLN A 103 ASN A 108 1 6 HELIX 6 AA6 GLY A 118 ASN A 127 1 10 SHEET 1 AA1 8 PHE A 89 SER A 91 0 SHEET 2 AA1 8 ILE A 72 LEU A 76 1 N VAL A 75 O SER A 91 SHEET 3 AA1 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72 SHEET 4 AA1 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50 SHEET 5 AA1 8 LEU A 5 SER A 12 1 N ASN A 6 O ILE A 115 SHEET 6 AA1 8 GLY A 130 ILE A 139 1 O PHE A 135 N CYS A 7 SHEET 7 AA1 8 ILE A 176 ASP A 187 -1 O LYS A 179 N ARG A 138 SHEET 8 AA1 8 LYS A 158 LEU A 160 -1 N LYS A 158 O GLU A 184 SHEET 1 AA2 8 PHE A 89 SER A 91 0 SHEET 2 AA2 8 ILE A 72 LEU A 76 1 N VAL A 75 O SER A 91 SHEET 3 AA2 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72 SHEET 4 AA2 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50 SHEET 5 AA2 8 LEU A 5 SER A 12 1 N ASN A 6 O ILE A 115 SHEET 6 AA2 8 GLY A 130 ILE A 139 1 O PHE A 135 N CYS A 7 SHEET 7 AA2 8 ILE A 176 ASP A 187 -1 O LYS A 179 N ARG A 138 SHEET 8 AA2 8 GLN A 171 GLU A 173 -1 N GLN A 171 O TYR A 178 SHEET 1 AA3 2 GLY A 16 GLY A 18 0 SHEET 2 AA3 2 THR A 147 PHE A 148 -1 O THR A 147 N ILE A 17 CISPEP 1 ARG A 66 PRO A 67 0 -5.11 CISPEP 2 ARG A 66 PRO A 67 0 -4.64 CISPEP 3 GLY A 117 GLY A 118 0 1.48 CRYST1 73.940 73.940 144.270 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013524 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006931 0.00000