HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SD8 TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM HOMO SAPIENS BOUND TITLE 2 TO NADP AND SDDC INHIBITOR SDDC-1190 (RACEMIC MIXTURE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN DHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HOMO SAPIENS, DHFR, NADP, FOLATE, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 2 INHIBITOR COMPLEX, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 02-MAR-22 5SD8 1 KEYWDS REVDAT 1 09-FEB-22 5SD8 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III, JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM HOMO JRNL TITL 2 SAPIENS BOUND TO NADP AND SDDC INHIBITOR SDDC-1190 (RACEMIC JRNL TITL 3 MIXTURE) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.580 REMARK 3 FREE R VALUE TEST SET COUNT : 1943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8589 - 4.9357 0.96 1790 143 0.1746 0.1489 REMARK 3 2 4.9357 - 3.9197 0.99 1730 147 0.1269 0.1486 REMARK 3 3 3.9197 - 3.4248 1.00 1719 140 0.1429 0.1615 REMARK 3 4 3.4248 - 3.1119 1.00 1727 121 0.1624 0.1934 REMARK 3 5 3.1119 - 2.8890 1.00 1701 138 0.1725 0.1902 REMARK 3 6 2.8890 - 2.7188 1.00 1707 128 0.1765 0.2067 REMARK 3 7 2.7188 - 2.5827 1.00 1694 132 0.1760 0.1962 REMARK 3 8 2.5827 - 2.4703 1.00 1666 134 0.1761 0.2286 REMARK 3 9 2.4703 - 2.3752 1.00 1657 157 0.1766 0.1968 REMARK 3 10 2.3752 - 2.2933 1.00 1650 160 0.1711 0.2001 REMARK 3 11 2.2933 - 2.2216 1.00 1691 115 0.1660 0.2268 REMARK 3 12 2.2216 - 2.1581 1.00 1661 142 0.1760 0.2171 REMARK 3 13 2.1581 - 2.1013 1.00 1661 138 0.1904 0.2075 REMARK 3 14 2.1013 - 2.0500 1.00 1646 148 0.2081 0.2488 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1689 REMARK 3 ANGLE : 0.888 2315 REMARK 3 CHIRALITY : 0.063 244 REMARK 3 PLANARITY : 0.005 313 REMARK 3 DIHEDRAL : 12.031 1363 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5493 13.2760 -26.3596 REMARK 3 T TENSOR REMARK 3 T11: 0.1635 T22: 0.1467 REMARK 3 T33: 0.1807 T12: -0.0122 REMARK 3 T13: 0.0157 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 4.6040 L22: 4.5115 REMARK 3 L33: 5.1106 L12: 0.2152 REMARK 3 L13: -0.2290 L23: -0.3248 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: 0.0325 S13: -0.0125 REMARK 3 S21: -0.0812 S22: 0.1227 S23: 0.3115 REMARK 3 S31: -0.0222 S32: -0.1947 S33: -0.0399 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9555 -1.0604 -20.4955 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.1669 REMARK 3 T33: 0.1724 T12: -0.0051 REMARK 3 T13: 0.0113 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 3.4689 L22: 5.6098 REMARK 3 L33: 3.1945 L12: -0.7785 REMARK 3 L13: 0.6032 L23: -2.1458 REMARK 3 S TENSOR REMARK 3 S11: 0.0688 S12: 0.1207 S13: -0.1280 REMARK 3 S21: -0.0955 S22: 0.0838 S23: 0.0372 REMARK 3 S31: 0.1937 S32: -0.0847 S33: -0.1401 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4521 10.9394 -11.1021 REMARK 3 T TENSOR REMARK 3 T11: 0.4338 T22: 0.4316 REMARK 3 T33: 0.2598 T12: 0.0403 REMARK 3 T13: 0.0270 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.5189 L22: 6.4381 REMARK 3 L33: 4.6217 L12: -2.4744 REMARK 3 L13: 3.9418 L23: -1.9176 REMARK 3 S TENSOR REMARK 3 S11: -0.2460 S12: -1.2059 S13: 0.0663 REMARK 3 S21: 0.9596 S22: 0.2217 S23: -0.2927 REMARK 3 S31: -0.2795 S32: -0.2318 S33: 0.0433 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3538 18.6700 -20.1355 REMARK 3 T TENSOR REMARK 3 T11: 0.2807 T22: 0.1868 REMARK 3 T33: 0.1882 T12: 0.0298 REMARK 3 T13: 0.0349 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 2.9401 L22: 6.7909 REMARK 3 L33: 3.8473 L12: 0.1036 REMARK 3 L13: 0.7079 L23: -1.7813 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: -0.2003 S13: 0.3634 REMARK 3 S21: 0.3984 S22: 0.0439 S23: 0.5717 REMARK 3 S31: -0.1797 S32: -0.3435 S33: -0.0589 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3128 22.9997 -23.5035 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.1035 REMARK 3 T33: 0.1788 T12: 0.0270 REMARK 3 T13: 0.0119 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 6.0996 L22: 4.6911 REMARK 3 L33: 3.6111 L12: 1.3985 REMARK 3 L13: 0.6514 L23: -0.3893 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.1139 S13: 0.1567 REMARK 3 S21: 0.2352 S22: 0.0440 S23: 0.2583 REMARK 3 S31: -0.0922 S32: 0.0302 S33: 0.0009 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4484 21.3147 -22.4333 REMARK 3 T TENSOR REMARK 3 T11: 0.2114 T22: 0.2408 REMARK 3 T33: 0.1817 T12: 0.0541 REMARK 3 T13: 0.0532 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.7864 L22: 7.8870 REMARK 3 L33: 5.8344 L12: 1.4241 REMARK 3 L13: 2.4122 L23: 0.1165 REMARK 3 S TENSOR REMARK 3 S11: -0.1636 S12: -0.2077 S13: 0.0480 REMARK 3 S21: 0.5745 S22: 0.2360 S23: -0.0385 REMARK 3 S31: -0.2532 S32: 0.1719 S33: -0.0216 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SD8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-22. REMARK 100 THE DEPOSITION ID IS D_1001404361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : C 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25659 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG+ D9 (284871D9): 170MM AMMONIUM REMARK 280 SULFATE, 25.5% (W/V) PEG4000, 15% (V/V) GLYCEROL, 10MG/ML, DC, REMARK 280 PUCK RFH2-7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.98500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.92500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.97750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.92500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.99250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.92500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.92500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 107.97750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.92500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.92500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.99250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.98500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER, THE SAME AS ASU REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 346 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 364 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 405 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 GLN A 85 CG CD OE1 NE2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 ASN A 186 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 111 -91.34 -100.16 REMARK 500 ASN A 186 58.41 -119.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 438 DISTANCE = 6.45 ANGSTROMS DBREF 5SD8 A 1 187 UNP P00374 DYR_HUMAN 1 187 SEQRES 1 A 187 MET VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN SEQRES 2 A 187 ASN MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO SEQRES 3 A 187 PRO LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR SEQRES 4 A 187 THR THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE SEQRES 5 A 187 MET GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN SEQRES 6 A 187 ARG PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG SEQRES 7 A 187 GLU LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER SEQRES 8 A 187 ARG SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO SEQRES 9 A 187 GLU LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY SEQRES 10 A 187 GLY SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY SEQRES 11 A 187 HIS LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE SEQRES 12 A 187 GLU SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS SEQRES 13 A 187 TYR LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP SEQRES 14 A 187 VAL GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL SEQRES 15 A 187 TYR GLU LYS ASN ASP HET NAP A 201 48 HET HJI A 202 29 HET I6J A 203 29 HET SO4 A 204 5 HET SO4 A 205 5 HET CL A 206 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM HJI (2R)-2-[(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 HJI OXY]PROPOXY}PHENYL)METHYL]-3,3-DIFLUOROPROPANOIC ACID HETNAM I6J (2S)-2-[(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 I6J OXY]PROPOXY}PHENYL)METHYL]-3,3-DIFLUOROPROPANOIC ACID HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HJI C19 H24 F2 N4 O4 FORMUL 4 I6J C19 H24 F2 N4 O4 FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 CL CL 1- FORMUL 8 HOH *138(H2 O) HELIX 1 AA1 LEU A 28 THR A 41 1 14 HELIX 2 AA2 LYS A 55 ILE A 61 1 7 HELIX 3 AA3 PRO A 62 ARG A 66 5 5 HELIX 4 AA4 SER A 93 THR A 101 1 9 HELIX 5 AA5 GLN A 103 ASN A 108 1 6 HELIX 6 AA6 GLY A 118 HIS A 128 1 11 SHEET 1 AA1 8 PHE A 89 SER A 91 0 SHEET 2 AA1 8 ILE A 72 LEU A 76 1 N VAL A 75 O SER A 91 SHEET 3 AA1 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72 SHEET 4 AA1 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50 SHEET 5 AA1 8 LEU A 5 SER A 12 1 N ASN A 6 O ILE A 115 SHEET 6 AA1 8 GLY A 130 ILE A 139 1 O PHE A 135 N CYS A 7 SHEET 7 AA1 8 ILE A 176 ASP A 187 -1 O LYS A 179 N ARG A 138 SHEET 8 AA1 8 LYS A 158 LEU A 160 -1 N LYS A 158 O GLU A 184 SHEET 1 AA2 8 PHE A 89 SER A 91 0 SHEET 2 AA2 8 ILE A 72 LEU A 76 1 N VAL A 75 O SER A 91 SHEET 3 AA2 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72 SHEET 4 AA2 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50 SHEET 5 AA2 8 LEU A 5 SER A 12 1 N ASN A 6 O ILE A 115 SHEET 6 AA2 8 GLY A 130 ILE A 139 1 O PHE A 135 N CYS A 7 SHEET 7 AA2 8 ILE A 176 ASP A 187 -1 O LYS A 179 N ARG A 138 SHEET 8 AA2 8 GLN A 171 GLU A 173 -1 N GLN A 171 O TYR A 178 SHEET 1 AA3 2 GLY A 16 GLY A 18 0 SHEET 2 AA3 2 THR A 147 PHE A 148 -1 O THR A 147 N ILE A 17 CISPEP 1 ARG A 66 PRO A 67 0 -5.22 CISPEP 2 ARG A 66 PRO A 67 0 -4.79 CISPEP 3 GLY A 117 GLY A 118 0 2.79 CRYST1 73.850 73.850 143.970 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013541 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006946 0.00000