HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SDA TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM HOMO SAPIENS BOUND TITLE 2 TO NADP AND SDDC INHIBITOR SDDC-774 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN DHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HOMO SAPIENS, DHFR, NADP, FOLATE, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 2 INHIBITOR COMPLEX, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 02-MAR-22 5SDA 1 KEYWDS REVDAT 1 09-FEB-22 5SDA 0 JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III, JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH JRNL TITL CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE FROM HOMO JRNL TITL 2 SAPIENS BOUND TO NADP AND SDDC INHIBITOR SDDC-774 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2481 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 15379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.550 REMARK 3 FREE R VALUE TEST SET COUNT : 1468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3507 - 5.2765 0.98 1471 181 0.1689 0.1859 REMARK 3 2 5.2765 - 4.1888 0.99 1429 139 0.1260 0.1770 REMARK 3 3 4.1888 - 3.6595 1.00 1420 132 0.1411 0.1684 REMARK 3 4 3.6595 - 3.3250 1.00 1365 159 0.1510 0.1778 REMARK 3 5 3.3250 - 3.0867 1.00 1362 153 0.1756 0.2552 REMARK 3 6 3.0867 - 2.9048 1.00 1373 157 0.1851 0.2437 REMARK 3 7 2.9048 - 2.7593 1.00 1354 147 0.1842 0.2552 REMARK 3 8 2.7593 - 2.6392 1.00 1398 121 0.1834 0.2478 REMARK 3 9 2.6392 - 2.5376 1.00 1384 131 0.1938 0.2388 REMARK 3 10 2.5376 - 2.4500 1.00 1355 148 0.1963 0.2658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1693 REMARK 3 ANGLE : 1.011 2311 REMARK 3 CHIRALITY : 0.058 243 REMARK 3 PLANARITY : 0.005 291 REMARK 3 DIHEDRAL : 10.129 1714 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1195 12.4618 -26.8173 REMARK 3 T TENSOR REMARK 3 T11: 0.1414 T22: 0.1740 REMARK 3 T33: 0.1257 T12: -0.0234 REMARK 3 T13: -0.0043 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.6939 L22: 5.1802 REMARK 3 L33: 4.7842 L12: 0.1466 REMARK 3 L13: -0.4191 L23: -0.3319 REMARK 3 S TENSOR REMARK 3 S11: -0.0757 S12: -0.0345 S13: 0.0854 REMARK 3 S21: -0.0275 S22: 0.0845 S23: -0.0035 REMARK 3 S31: 0.0577 S32: -0.0877 S33: -0.0013 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1662 -0.5243 -25.7703 REMARK 3 T TENSOR REMARK 3 T11: 0.2317 T22: 0.1842 REMARK 3 T33: 0.1495 T12: -0.0144 REMARK 3 T13: -0.0318 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.1501 L22: 5.7345 REMARK 3 L33: 5.4230 L12: -0.9775 REMARK 3 L13: -0.0547 L23: -1.0613 REMARK 3 S TENSOR REMARK 3 S11: 0.1018 S12: 0.0732 S13: -0.1429 REMARK 3 S21: -0.4865 S22: -0.0544 S23: 0.2024 REMARK 3 S31: 0.4552 S32: -0.0151 S33: -0.0448 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3928 -9.1027 -17.0167 REMARK 3 T TENSOR REMARK 3 T11: 0.2478 T22: 0.2635 REMARK 3 T33: 0.3291 T12: 0.0406 REMARK 3 T13: -0.0638 T23: 0.0822 REMARK 3 L TENSOR REMARK 3 L11: 7.7292 L22: 8.4951 REMARK 3 L33: 2.9814 L12: 3.6453 REMARK 3 L13: 0.6742 L23: 1.4447 REMARK 3 S TENSOR REMARK 3 S11: 0.0739 S12: -0.0598 S13: -0.5577 REMARK 3 S21: -0.1798 S22: -0.0594 S23: 0.5943 REMARK 3 S31: 0.9890 S32: -0.3962 S33: -0.0200 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4654 0.7244 -15.7004 REMARK 3 T TENSOR REMARK 3 T11: 0.2058 T22: 0.1936 REMARK 3 T33: 0.1548 T12: -0.0298 REMARK 3 T13: -0.0228 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 4.1252 L22: 7.1744 REMARK 3 L33: 3.8029 L12: -2.0220 REMARK 3 L13: 0.0778 L23: -2.4572 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: -0.0030 S13: -0.0293 REMARK 3 S21: -0.0300 S22: -0.1165 S23: -0.1498 REMARK 3 S31: 0.1887 S32: 0.1907 S33: 0.0115 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5253 15.2709 -18.5008 REMARK 3 T TENSOR REMARK 3 T11: 0.3059 T22: 0.2545 REMARK 3 T33: 0.2301 T12: 0.0001 REMARK 3 T13: -0.0816 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 4.1612 L22: 5.1393 REMARK 3 L33: 7.6842 L12: 0.1499 REMARK 3 L13: 0.1595 L23: -3.0229 REMARK 3 S TENSOR REMARK 3 S11: 0.0862 S12: -0.6425 S13: -0.3257 REMARK 3 S21: 0.4726 S22: -0.0259 S23: -0.5311 REMARK 3 S31: 0.0492 S32: -0.0264 S33: -0.0137 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2758 18.5384 -20.5400 REMARK 3 T TENSOR REMARK 3 T11: 0.2799 T22: 0.3114 REMARK 3 T33: 0.3447 T12: 0.0903 REMARK 3 T13: 0.0920 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.4948 L22: 6.0067 REMARK 3 L33: 6.9365 L12: 1.0444 REMARK 3 L13: -1.2209 L23: -3.2314 REMARK 3 S TENSOR REMARK 3 S11: 0.2578 S12: -0.1715 S13: -0.1150 REMARK 3 S21: 0.4645 S22: 0.0652 S23: 0.9333 REMARK 3 S31: -0.7510 S32: -0.6288 S33: -0.2520 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0120 21.6908 -12.8432 REMARK 3 T TENSOR REMARK 3 T11: 0.4072 T22: 0.4457 REMARK 3 T33: 0.2153 T12: -0.0430 REMARK 3 T13: -0.0046 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 7.7640 L22: 8.8470 REMARK 3 L33: 4.7666 L12: 4.7377 REMARK 3 L13: -0.8347 L23: -3.5855 REMARK 3 S TENSOR REMARK 3 S11: 0.6866 S12: -1.4315 S13: 0.7010 REMARK 3 S21: 1.1536 S22: -0.3258 S23: 0.1813 REMARK 3 S31: -0.0593 S32: -0.3347 S33: -0.3614 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7392 22.5094 -31.9976 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.2724 REMARK 3 T33: 0.0934 T12: 0.0696 REMARK 3 T13: -0.0091 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 6.6043 L22: 3.2877 REMARK 3 L33: 1.0518 L12: 0.0541 REMARK 3 L13: 0.6927 L23: 0.0441 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: 0.0860 S13: 0.1890 REMARK 3 S21: -0.4338 S22: 0.0416 S23: -0.3012 REMARK 3 S31: 0.0856 S32: -0.1981 S33: -0.0361 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9432 19.8928 -21.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.2227 T22: 0.2757 REMARK 3 T33: 0.1431 T12: 0.0229 REMARK 3 T13: 0.0280 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 5.1098 L22: 4.8606 REMARK 3 L33: 3.8924 L12: 0.5633 REMARK 3 L13: 0.3327 L23: 0.4592 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.3779 S13: 0.0578 REMARK 3 S21: 0.5683 S22: -0.2006 S23: -0.2832 REMARK 3 S31: 0.1383 S32: 0.5220 S33: 0.1855 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SDA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1001404363. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15383 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG2 E5 (273949E5): 200MM LITHIUM REMARK 280 SULFATE, 100MM SODIUM ACETATE:ACETIC ACID PH4.5, 30% (W/V) REMARK 280 PEG8000; PROT CONC 26MG/ML, CRYO 20% EG, PUCK OGI6-2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.81500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.15000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.72250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.15000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.90750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.15000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 107.72250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.15000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.15000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.90750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.81500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER, THE SAME AS ASU REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 329 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 349 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 95 CA CB REMARK 480 LYS A 185 CA CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 172 O HOH A 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 77 144.50 -171.10 REMARK 500 ASP A 111 -98.55 -93.29 REMARK 500 MET A 140 49.37 -89.80 REMARK 500 ASN A 186 67.88 -156.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 5SDA A 1 187 UNP P00374 DYR_HUMAN 1 187 SEQRES 1 A 187 MET VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN SEQRES 2 A 187 ASN MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO SEQRES 3 A 187 PRO LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR SEQRES 4 A 187 THR THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE SEQRES 5 A 187 MET GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN SEQRES 6 A 187 ARG PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG SEQRES 7 A 187 GLU LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER SEQRES 8 A 187 ARG SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO SEQRES 9 A 187 GLU LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY SEQRES 10 A 187 GLY SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY SEQRES 11 A 187 HIS LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE SEQRES 12 A 187 GLU SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS SEQRES 13 A 187 TYR LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP SEQRES 14 A 187 VAL GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL SEQRES 15 A 187 TYR GLU LYS ASN ASP HET NAP A 201 48 HET GI6 A 202 27 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET CL A 206 1 HET EDO A 207 4 HET EDO A 208 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GI6 (2R)-3-(2-{3-[(2,4-DIAMINO-6-ETHYLPYRIMIDIN-5-YL) HETNAM 2 GI6 OXY]PROPOXY}PHENYL)-2-METHYLPROPANAMIDE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 GI6 C19 H27 N5 O3 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 CL CL 1- FORMUL 8 EDO 2(C2 H6 O2) FORMUL 10 HOH *106(H2 O) HELIX 1 AA1 LEU A 28 THR A 41 1 14 HELIX 2 AA2 LYS A 55 ILE A 61 1 7 HELIX 3 AA3 PRO A 62 ARG A 66 5 5 HELIX 4 AA4 SER A 93 THR A 101 1 9 HELIX 5 AA5 GLN A 103 ASN A 108 1 6 HELIX 6 AA6 GLY A 118 HIS A 128 1 11 SHEET 1 AA1 8 PHE A 89 SER A 91 0 SHEET 2 AA1 8 ILE A 72 LEU A 76 1 N VAL A 75 O SER A 91 SHEET 3 AA1 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72 SHEET 4 AA1 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50 SHEET 5 AA1 8 LEU A 5 VAL A 11 1 N ASN A 6 O ILE A 115 SHEET 6 AA1 8 HIS A 131 ILE A 139 1 O PHE A 135 N CYS A 7 SHEET 7 AA1 8 ILE A 176 ASN A 186 -1 O LYS A 179 N ARG A 138 SHEET 8 AA1 8 LYS A 158 LEU A 160 -1 N LYS A 158 O GLU A 184 SHEET 1 AA2 8 PHE A 89 SER A 91 0 SHEET 2 AA2 8 ILE A 72 LEU A 76 1 N VAL A 75 O SER A 91 SHEET 3 AA2 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72 SHEET 4 AA2 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50 SHEET 5 AA2 8 LEU A 5 VAL A 11 1 N ASN A 6 O ILE A 115 SHEET 6 AA2 8 HIS A 131 ILE A 139 1 O PHE A 135 N CYS A 7 SHEET 7 AA2 8 ILE A 176 ASN A 186 -1 O LYS A 179 N ARG A 138 SHEET 8 AA2 8 GLN A 171 GLU A 173 -1 N GLN A 171 O TYR A 178 SHEET 1 AA3 2 GLY A 16 GLY A 18 0 SHEET 2 AA3 2 THR A 147 PHE A 148 -1 O THR A 147 N ILE A 17 CISPEP 1 ARG A 66 PRO A 67 0 -7.77 CISPEP 2 ARG A 66 PRO A 67 0 -6.11 CISPEP 3 GLY A 117 GLY A 118 0 0.63 CRYST1 74.300 74.300 143.630 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013459 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006962 0.00000