HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 20-DEC-21 5SDB
TITLE CRYSTAL STRUCTURE OF HUMAN DHFR COMPLEXED WITH NADP AND N10-FORMYL-
TITLE 2 TETRAHYDROFOLATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE;
COMPND 3 CHAIN: A, B;
COMPND 4 EC: 1.5.1.3;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: DHFR;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS STRUCTURE-GUIDED DRUG DISCOVERY CONSORTIUM, DIHYDROFOLATE REDUCTASE,
KEYWDS 2 HDHFR, NADP, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX,
KEYWDS 3 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR
KEYWDS 4 INFECTIOUS DISEASE, SSGCID
EXPDTA X-RAY DIFFRACTION
AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID)
REVDAT 3 22-MAY-24 5SDB 1 REMARK
REVDAT 2 02-MAR-22 5SDB 1 KEYWDS
REVDAT 1 09-FEB-22 5SDB 0
JRNL AUTH S.J.MAYCLIN,J.W.FAIRMAN,D.M.DRANOW,D.G.CONRADY,D.FOX III,
JRNL AUTH 2 C.M.LUKACS,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS,J.ABENDROTH
JRNL TITL CRYSTAL STRUCTURE OF HUMAN DHFR COMPLEXED WITH NADP AND
JRNL TITL 2 N10-FORMYL-TETRAHYDROFOLATE
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.55 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX DEV_2998
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.63
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990
REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9
REMARK 3 NUMBER OF REFLECTIONS : 50797
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.167
REMARK 3 R VALUE (WORKING SET) : 0.165
REMARK 3 FREE R VALUE : 0.204
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.990
REMARK 3 FREE R VALUE TEST SET COUNT : 2028
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 36.6426 - 3.7342 0.97 3560 165 0.1359 0.1755
REMARK 3 2 3.7342 - 2.9643 0.92 3433 151 0.1421 0.1677
REMARK 3 3 2.9643 - 2.5897 0.92 3402 149 0.1650 0.2030
REMARK 3 4 2.5897 - 2.3530 0.92 3384 163 0.1736 0.2110
REMARK 3 5 2.3530 - 2.1844 0.93 3440 148 0.1777 0.2336
REMARK 3 6 2.1844 - 2.0556 0.94 3480 133 0.1836 0.2519
REMARK 3 7 2.0556 - 1.9527 0.94 3483 136 0.1785 0.2230
REMARK 3 8 1.9527 - 1.8677 0.95 3538 137 0.1867 0.2201
REMARK 3 9 1.8677 - 1.7958 0.95 3545 139 0.1870 0.2425
REMARK 3 10 1.7958 - 1.7338 0.95 3513 152 0.2065 0.2566
REMARK 3 11 1.7338 - 1.6796 0.95 3480 133 0.2195 0.3076
REMARK 3 12 1.6796 - 1.6316 0.94 3550 126 0.2298 0.3251
REMARK 3 13 1.6316 - 1.5886 0.94 3499 150 0.2553 0.2678
REMARK 3 14 1.5886 - 1.5499 0.94 3462 146 0.2647 0.2769
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.200
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 21.34
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.18
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 15
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 28 )
REMARK 3 ORIGIN FOR THE GROUP (A): -1.0216 11.1841 22.9352
REMARK 3 T TENSOR
REMARK 3 T11: 0.1258 T22: 0.1586
REMARK 3 T33: 0.1438 T12: -0.0217
REMARK 3 T13: 0.0159 T23: 0.0015
REMARK 3 L TENSOR
REMARK 3 L11: 6.0313 L22: 4.3523
REMARK 3 L33: 2.8644 L12: -1.7708
REMARK 3 L13: 1.6342 L23: -0.1325
REMARK 3 S TENSOR
REMARK 3 S11: -0.1174 S12: 0.0072 S13: 0.0159
REMARK 3 S21: 0.0816 S22: 0.1356 S23: 0.1213
REMARK 3 S31: 0.0577 S32: 0.2348 S33: 0.0071
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 40 )
REMARK 3 ORIGIN FOR THE GROUP (A): -3.0391 2.3441 14.4184
REMARK 3 T TENSOR
REMARK 3 T11: 0.2930 T22: 0.1714
REMARK 3 T33: 0.2681 T12: -0.0135
REMARK 3 T13: 0.0046 T23: -0.0447
REMARK 3 L TENSOR
REMARK 3 L11: 6.2076 L22: 5.8998
REMARK 3 L33: 7.4793 L12: -1.3074
REMARK 3 L13: 3.0929 L23: -6.3104
REMARK 3 S TENSOR
REMARK 3 S11: 0.1076 S12: 0.1857 S13: -0.5417
REMARK 3 S21: -0.4156 S22: 0.0655 S23: 0.1185
REMARK 3 S31: 0.7954 S32: 0.0508 S33: -0.2156
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 76 )
REMARK 3 ORIGIN FOR THE GROUP (A): 2.2015 12.1973 7.9925
REMARK 3 T TENSOR
REMARK 3 T11: 0.1744 T22: 0.1595
REMARK 3 T33: 0.1204 T12: -0.0223
REMARK 3 T13: 0.0274 T23: 0.0019
REMARK 3 L TENSOR
REMARK 3 L11: 4.6941 L22: 3.4830
REMARK 3 L33: 3.9282 L12: 0.4335
REMARK 3 L13: 1.4598 L23: -0.0124
REMARK 3 S TENSOR
REMARK 3 S11: -0.0611 S12: 0.2019 S13: -0.1422
REMARK 3 S21: -0.2659 S22: 0.0638 S23: -0.0252
REMARK 3 S31: 0.2067 S32: 0.0747 S33: -0.0107
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 88 )
REMARK 3 ORIGIN FOR THE GROUP (A): 9.9952 22.7829 7.0979
REMARK 3 T TENSOR
REMARK 3 T11: 0.3129 T22: 0.2922
REMARK 3 T33: 0.2521 T12: -0.0580
REMARK 3 T13: 0.0018 T23: 0.0711
REMARK 3 L TENSOR
REMARK 3 L11: 8.7752 L22: 1.0318
REMARK 3 L33: 2.1487 L12: 1.1864
REMARK 3 L13: -1.6790 L23: -1.4886
REMARK 3 S TENSOR
REMARK 3 S11: -0.0469 S12: 0.1944 S13: 0.4320
REMARK 3 S21: -0.2649 S22: 0.1328 S23: -0.2795
REMARK 3 S31: -0.2627 S32: 0.6558 S33: -0.1416
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 112 )
REMARK 3 ORIGIN FOR THE GROUP (A): -4.4955 22.0998 2.0169
REMARK 3 T TENSOR
REMARK 3 T11: 0.3228 T22: 0.2486
REMARK 3 T33: 0.2676 T12: -0.0365
REMARK 3 T13: -0.0227 T23: 0.0616
REMARK 3 L TENSOR
REMARK 3 L11: 2.9151 L22: 4.1950
REMARK 3 L33: 2.3802 L12: 2.5671
REMARK 3 L13: 1.6908 L23: 0.8254
REMARK 3 S TENSOR
REMARK 3 S11: -0.2314 S12: 0.2966 S13: 0.2338
REMARK 3 S21: -0.4681 S22: 0.1766 S23: 0.3865
REMARK 3 S31: -0.0391 S32: -0.0327 S33: 0.0672
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 127 )
REMARK 3 ORIGIN FOR THE GROUP (A): -5.0675 20.0995 17.1198
REMARK 3 T TENSOR
REMARK 3 T11: 0.1426 T22: 0.1617
REMARK 3 T33: 0.2755 T12: -0.0303
REMARK 3 T13: 0.0120 T23: -0.0021
REMARK 3 L TENSOR
REMARK 3 L11: 3.2990 L22: 8.9763
REMARK 3 L33: 9.3996 L12: 1.1702
REMARK 3 L13: 2.7101 L23: 4.4559
REMARK 3 S TENSOR
REMARK 3 S11: -0.1781 S12: -0.0195 S13: 0.5632
REMARK 3 S21: -0.2910 S22: 0.0370 S23: 0.7620
REMARK 3 S31: -0.3534 S32: 0.0016 S33: 0.0543
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 139 )
REMARK 3 ORIGIN FOR THE GROUP (A): -11.3962 14.3568 19.0543
REMARK 3 T TENSOR
REMARK 3 T11: 0.1546 T22: 0.1725
REMARK 3 T33: 0.2942 T12: -0.0437
REMARK 3 T13: -0.0147 T23: 0.0353
REMARK 3 L TENSOR
REMARK 3 L11: 5.9662 L22: 5.8090
REMARK 3 L33: 7.0423 L12: -4.1042
REMARK 3 L13: 2.6490 L23: -1.7803
REMARK 3 S TENSOR
REMARK 3 S11: -0.0050 S12: 0.2379 S13: 0.5091
REMARK 3 S21: -0.1972 S22: -0.1440 S23: 0.1161
REMARK 3 S31: -0.2353 S32: 0.0542 S33: 0.1999
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 149 )
REMARK 3 ORIGIN FOR THE GROUP (A): 0.7438 11.8964 30.9502
REMARK 3 T TENSOR
REMARK 3 T11: 0.2305 T22: 0.3030
REMARK 3 T33: 0.1946 T12: 0.0303
REMARK 3 T13: 0.0097 T23: -0.0292
REMARK 3 L TENSOR
REMARK 3 L11: 3.7541 L22: 3.4595
REMARK 3 L33: 4.6001 L12: 1.9571
REMARK 3 L13: -1.7679 L23: -3.8910
REMARK 3 S TENSOR
REMARK 3 S11: 0.1060 S12: -0.4440 S13: -0.0861
REMARK 3 S21: 0.4776 S22: -0.0868 S23: -0.1224
REMARK 3 S31: -0.0698 S32: 0.2091 S33: -0.0060
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 159 )
REMARK 3 ORIGIN FOR THE GROUP (A): -16.5748 18.4041 25.6760
REMARK 3 T TENSOR
REMARK 3 T11: 0.1792 T22: 0.2826
REMARK 3 T33: 0.2707 T12: 0.0501
REMARK 3 T13: 0.0338 T23: -0.0057
REMARK 3 L TENSOR
REMARK 3 L11: 3.9698 L22: 9.1364
REMARK 3 L33: 8.9239 L12: 3.5634
REMARK 3 L13: 3.4773 L23: 0.6805
REMARK 3 S TENSOR
REMARK 3 S11: -0.2378 S12: -0.6842 S13: 0.4238
REMARK 3 S21: 0.3012 S22: -0.0243 S23: 0.4663
REMARK 3 S31: -0.0625 S32: -0.7595 S33: 0.2074
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 187 )
REMARK 3 ORIGIN FOR THE GROUP (A): -12.1879 4.5729 22.0911
REMARK 3 T TENSOR
REMARK 3 T11: 0.2153 T22: 0.1804
REMARK 3 T33: 0.2442 T12: -0.0480
REMARK 3 T13: 0.0101 T23: 0.0378
REMARK 3 L TENSOR
REMARK 3 L11: 6.6889 L22: 3.9227
REMARK 3 L33: 3.2243 L12: -3.2045
REMARK 3 L13: 2.7710 L23: -1.3362
REMARK 3 S TENSOR
REMARK 3 S11: -0.0364 S12: -0.2370 S13: -0.3252
REMARK 3 S21: -0.1698 S22: 0.2075 S23: 0.4141
REMARK 3 S31: 0.2096 S32: -0.2728 S33: -0.2114
REMARK 3 TLS GROUP : 11
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 28 )
REMARK 3 ORIGIN FOR THE GROUP (A): -14.5374 29.7770 44.3435
REMARK 3 T TENSOR
REMARK 3 T11: 0.1422 T22: 0.1377
REMARK 3 T33: 0.1205 T12: 0.0275
REMARK 3 T13: 0.0253 T23: -0.0057
REMARK 3 L TENSOR
REMARK 3 L11: 5.7476 L22: 2.5934
REMARK 3 L33: 4.4054 L12: -0.5686
REMARK 3 L13: 1.9438 L23: 0.1432
REMARK 3 S TENSOR
REMARK 3 S11: -0.0392 S12: -0.0876 S13: -0.0217
REMARK 3 S21: -0.0206 S22: 0.1691 S23: 0.0955
REMARK 3 S31: 0.1068 S32: 0.2026 S33: -0.1156
REMARK 3 TLS GROUP : 12
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 60 )
REMARK 3 ORIGIN FOR THE GROUP (A): -14.0469 17.5778 48.6084
REMARK 3 T TENSOR
REMARK 3 T11: 0.3152 T22: 0.1894
REMARK 3 T33: 0.2089 T12: 0.0644
REMARK 3 T13: -0.0434 T23: -0.0072
REMARK 3 L TENSOR
REMARK 3 L11: 1.6966 L22: 1.9553
REMARK 3 L33: 2.9943 L12: -0.1313
REMARK 3 L13: 0.2601 L23: -1.4198
REMARK 3 S TENSOR
REMARK 3 S11: 0.0206 S12: -0.1484 S13: -0.2070
REMARK 3 S21: -0.0116 S22: 0.1305 S23: 0.0046
REMARK 3 S31: 0.7517 S32: 0.2911 S33: -0.1326
REMARK 3 TLS GROUP : 13
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 101 )
REMARK 3 ORIGIN FOR THE GROUP (A): -20.5325 19.4735 59.0212
REMARK 3 T TENSOR
REMARK 3 T11: 0.2347 T22: 0.1696
REMARK 3 T33: 0.2069 T12: -0.0314
REMARK 3 T13: 0.0157 T23: 0.0652
REMARK 3 L TENSOR
REMARK 3 L11: 4.0022 L22: 3.6543
REMARK 3 L33: 6.6641 L12: 0.1302
REMARK 3 L13: 0.6723 L23: -0.5207
REMARK 3 S TENSOR
REMARK 3 S11: 0.0866 S12: -0.2620 S13: -0.2573
REMARK 3 S21: -0.0064 S22: 0.1071 S23: 0.3833
REMARK 3 S31: 0.2852 S32: -0.4057 S33: -0.1715
REMARK 3 TLS GROUP : 14
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 118 )
REMARK 3 ORIGIN FOR THE GROUP (A): -9.0711 14.6488 59.4735
REMARK 3 T TENSOR
REMARK 3 T11: 0.3153 T22: 0.2795
REMARK 3 T33: 0.2188 T12: 0.0443
REMARK 3 T13: 0.0027 T23: -0.0143
REMARK 3 L TENSOR
REMARK 3 L11: 2.7323 L22: 3.0965
REMARK 3 L33: 3.1682 L12: -2.2271
REMARK 3 L13: 1.5525 L23: 0.3990
REMARK 3 S TENSOR
REMARK 3 S11: 0.3514 S12: -0.0002 S13: -0.2476
REMARK 3 S21: -0.3216 S22: -0.1482 S23: 0.2436
REMARK 3 S31: 0.9534 S32: 0.3915 S33: -0.0414
REMARK 3 TLS GROUP : 15
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 187 )
REMARK 3 ORIGIN FOR THE GROUP (A): -5.9246 29.6898 44.9781
REMARK 3 T TENSOR
REMARK 3 T11: 0.1689 T22: 0.2361
REMARK 3 T33: 0.1952 T12: -0.0211
REMARK 3 T13: 0.0141 T23: -0.0001
REMARK 3 L TENSOR
REMARK 3 L11: 2.7303 L22: 2.2292
REMARK 3 L33: 4.1667 L12: -1.5018
REMARK 3 L13: -0.6333 L23: 0.1828
REMARK 3 S TENSOR
REMARK 3 S11: 0.0190 S12: -0.2415 S13: 0.1365
REMARK 3 S21: 0.1225 S22: 0.0659 S23: -0.1992
REMARK 3 S31: 0.0544 S32: 0.6693 S33: -0.0568
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5SDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-21.
REMARK 100 THE DEPOSITION ID IS D_1001404364.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-JAN-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : CLSI
REMARK 200 BEAMLINE : 08ID-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949
REMARK 200 MONOCHROMATOR : SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50838
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0
REMARK 200 DATA REDUNDANCY : 2.309
REMARK 200 R MERGE (I) : 0.03100
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4200
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59
REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5
REMARK 200 DATA REDUNDANCY IN SHELL : 2.34
REMARK 200 R MERGE FOR SHELL (I) : 0.39500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.110
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 45.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: WIZARD 3/4 H10 (296175H10): 100 MM
REMARK 280 TRIS BASE/ HYDROCHLORIC ACID PH 8.5, 30% (W/V) PEG3350, 30% (V/V)
REMARK 280 2-PROPANOL, PROTEIN CONC. 28.74 MG/ML, PROTEIN BATCH ID XP819,
REMARK 280 10 MM NADP, 3.75 MM BSI108214, SEEDED FROM 293949G10,
REMARK 280 CRYOPROTECTED WITH 20% EG, PUCK IZS6-6, VAPOR DIFFUSION, SITTING
REMARK 280 DROP, TEMPERATURE 290K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 MET B 1
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 45 CG CD OE1 OE2
REMARK 470 LYS A 81 CG CD CE NZ
REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2
REMARK 470 GLU B 45 CG CD OE1 OE2
REMARK 470 GLU B 151 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 111 -94.53 -97.84
REMARK 500 ASP B 111 -92.84 -96.69
REMARK 500
REMARK 500 REMARK: NULL
DBREF 5SDB A 1 187 UNP P00374 DYR_HUMAN 1 187
DBREF 5SDB B 1 187 UNP P00374 DYR_HUMAN 1 187
SEQRES 1 A 187 MET VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN
SEQRES 2 A 187 ASN MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO
SEQRES 3 A 187 PRO LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR
SEQRES 4 A 187 THR THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE
SEQRES 5 A 187 MET GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN
SEQRES 6 A 187 ARG PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG
SEQRES 7 A 187 GLU LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER
SEQRES 8 A 187 ARG SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO
SEQRES 9 A 187 GLU LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY
SEQRES 10 A 187 GLY SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY
SEQRES 11 A 187 HIS LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE
SEQRES 12 A 187 GLU SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS
SEQRES 13 A 187 TYR LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP
SEQRES 14 A 187 VAL GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL
SEQRES 15 A 187 TYR GLU LYS ASN ASP
SEQRES 1 B 187 MET VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN
SEQRES 2 B 187 ASN MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO
SEQRES 3 B 187 PRO LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR
SEQRES 4 B 187 THR THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE
SEQRES 5 B 187 MET GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN
SEQRES 6 B 187 ARG PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG
SEQRES 7 B 187 GLU LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER
SEQRES 8 B 187 ARG SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO
SEQRES 9 B 187 GLU LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY
SEQRES 10 B 187 GLY SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY
SEQRES 11 B 187 HIS LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE
SEQRES 12 B 187 GLU SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS
SEQRES 13 B 187 TYR LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP
SEQRES 14 B 187 VAL GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL
SEQRES 15 B 187 TYR GLU LYS ASN ASP
HET NAP A 201 48
HET G3V A 202 34
HET EDO A 203 4
HET NAP B 201 48
HET G3V B 202 34
HET EDO B 203 4
HET EDO B 204 4
HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
HETNAM G3V N-(4-{[(2,4-DIAMINOPTERIDIN-6-YL)
HETNAM 2 G3V METHYL](HYDROXYMETHYL)AMINO}BENZENE-1-CARBONYL)-L-
HETNAM 3 G3V GLUTAMIC ACID
HETNAM EDO 1,2-ETHANEDIOL
HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 NAP 2(C21 H28 N7 O17 P3)
FORMUL 4 G3V 2(C20 H22 N8 O6)
FORMUL 5 EDO 3(C2 H6 O2)
FORMUL 10 HOH *328(H2 O)
HELIX 1 AA1 LEU A 28 THR A 41 1 14
HELIX 2 AA2 LYS A 55 ILE A 61 1 7
HELIX 3 AA3 PRO A 62 ARG A 66 5 5
HELIX 4 AA4 SER A 93 GLU A 102 1 10
HELIX 5 AA5 GLN A 103 ASN A 108 1 6
HELIX 6 AA6 GLY A 118 ASN A 127 1 10
HELIX 7 AA7 LEU B 28 THR B 41 1 14
HELIX 8 AA8 LYS B 55 PHE B 59 1 5
HELIX 9 AA9 SER B 60 ILE B 61 5 2
HELIX 10 AB1 PRO B 62 ARG B 66 5 5
HELIX 11 AB2 SER B 93 GLU B 102 1 10
HELIX 12 AB3 GLN B 103 ASN B 108 1 6
HELIX 13 AB4 GLY B 118 ASN B 127 1 10
SHEET 1 AA1 8 PHE A 89 SER A 91 0
SHEET 2 AA1 8 ARG A 71 LEU A 76 1 N VAL A 75 O PHE A 89
SHEET 3 AA1 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72
SHEET 4 AA1 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50
SHEET 5 AA1 8 LEU A 5 SER A 12 1 N ASN A 6 O ILE A 115
SHEET 6 AA1 8 HIS A 131 ILE A 139 1 O PHE A 135 N CYS A 7
SHEET 7 AA1 8 ILE A 176 ASN A 186 -1 O LYS A 179 N ARG A 138
SHEET 8 AA1 8 LYS A 158 LEU A 159 -1 N LYS A 158 O GLU A 184
SHEET 1 AA2 8 PHE A 89 SER A 91 0
SHEET 2 AA2 8 ARG A 71 LEU A 76 1 N VAL A 75 O PHE A 89
SHEET 3 AA2 8 GLN A 48 GLY A 54 1 N VAL A 51 O ILE A 72
SHEET 4 AA2 8 VAL A 110 ILE A 115 1 O TRP A 114 N LEU A 50
SHEET 5 AA2 8 LEU A 5 SER A 12 1 N ASN A 6 O ILE A 115
SHEET 6 AA2 8 HIS A 131 ILE A 139 1 O PHE A 135 N CYS A 7
SHEET 7 AA2 8 ILE A 176 ASN A 186 -1 O LYS A 179 N ARG A 138
SHEET 8 AA2 8 GLN A 171 GLU A 173 -1 N GLN A 171 O TYR A 178
SHEET 1 AA3 2 GLY A 16 GLY A 18 0
SHEET 2 AA3 2 THR A 147 PHE A 148 -1 O THR A 147 N ILE A 17
SHEET 1 AA4 8 PHE B 89 SER B 91 0
SHEET 2 AA4 8 ARG B 71 LEU B 76 1 N VAL B 75 O PHE B 89
SHEET 3 AA4 8 GLN B 48 GLY B 54 1 N VAL B 51 O ILE B 72
SHEET 4 AA4 8 VAL B 110 ILE B 115 1 O TRP B 114 N LEU B 50
SHEET 5 AA4 8 LEU B 5 VAL B 11 1 N ASN B 6 O ILE B 115
SHEET 6 AA4 8 HIS B 131 ILE B 139 1 O PHE B 135 N CYS B 7
SHEET 7 AA4 8 ILE B 176 ASN B 186 -1 O LYS B 179 N ARG B 138
SHEET 8 AA4 8 LYS B 158 LEU B 159 -1 N LYS B 158 O GLU B 184
SHEET 1 AA5 8 PHE B 89 SER B 91 0
SHEET 2 AA5 8 ARG B 71 LEU B 76 1 N VAL B 75 O PHE B 89
SHEET 3 AA5 8 GLN B 48 GLY B 54 1 N VAL B 51 O ILE B 72
SHEET 4 AA5 8 VAL B 110 ILE B 115 1 O TRP B 114 N LEU B 50
SHEET 5 AA5 8 LEU B 5 VAL B 11 1 N ASN B 6 O ILE B 115
SHEET 6 AA5 8 HIS B 131 ILE B 139 1 O PHE B 135 N CYS B 7
SHEET 7 AA5 8 ILE B 176 ASN B 186 -1 O LYS B 179 N ARG B 138
SHEET 8 AA5 8 GLN B 171 GLU B 173 -1 N GLN B 171 O TYR B 178
SHEET 1 AA6 2 GLY B 16 GLY B 18 0
SHEET 2 AA6 2 THR B 147 PHE B 148 -1 O THR B 147 N ILE B 17
CISPEP 1 ARG A 66 PRO A 67 0 -7.35
CISPEP 2 GLY A 117 GLY A 118 0 5.03
CISPEP 3 ARG B 66 PRO B 67 0 -7.33
CISPEP 4 GLY B 117 GLY B 118 0 4.54
CRYST1 37.090 42.740 72.290 91.05 101.88 120.00 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.026961 0.015569 0.007977 0.00000
SCALE2 0.000000 0.027018 0.003902 0.00000
SCALE3 0.000000 0.000000 0.014282 0.00000