HEADER DE NOVO PROTEIN 03-AUG-16 5SUU TITLE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A COVALENT TRIMER DERIVED FROM A- TITLE 2 BETA 17-36. X-RAY DIFFRACTOMETER DATA SET. (ORN)CVFFCED(ORN)AII(SAR) TITLE 3 L(ORN)V. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 16MER A-BETA PEPTIDE: ORN-CYS-VAL-PHE-PHE-CYS-GLU-ASP-ORN- COMPND 3 ALA-ILE-ILE-SAR-LEU-ORN-VAL; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 OTHER_DETAILS: 16MER PEPTIDE DERIVED FROM A-BETA 17-36 KEYWDS AMYLOID, OLIGOMER, ALZHEIMER'S, TRIMER, PROTEIN FIBRIL, DE NOVO KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.G.KREUTZER,R.K.SPENCER,J.S.NOWICK REVDAT 4 27-MAR-24 5SUU 1 JRNL LINK REVDAT 3 25-DEC-19 5SUU 1 REMARK REVDAT 2 13-SEP-17 5SUU 1 REMARK REVDAT 1 11-JAN-17 5SUU 0 JRNL AUTH A.G.KREUTZER,S.YOO,R.K.SPENCER,J.S.NOWICK JRNL TITL STABILIZATION, ASSEMBLY, AND TOXICITY OF TRIMERS DERIVED JRNL TITL 2 FROM A BETA. JRNL REF J.AM.CHEM.SOC. V. 139 966 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 28001392 JRNL DOI 10.1021/JACS.6B11748 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 3847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.940 REMARK 3 FREE R VALUE TEST SET COUNT : 344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.1199 - 2.5597 0.99 1787 173 0.2157 0.2274 REMARK 3 2 2.5597 - 2.0320 0.95 1716 171 0.2177 0.2675 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 252 REMARK 3 ANGLE : 1.236 332 REMARK 3 CHIRALITY : 0.041 40 REMARK 3 PLANARITY : 0.008 42 REMARK 3 DIHEDRAL : 31.721 124 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4551 5.9060 6.9049 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.2075 REMARK 3 T33: 0.1429 T12: 0.0432 REMARK 3 T13: -0.0118 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 5.8265 L22: 6.4682 REMARK 3 L33: 8.7407 L12: 0.2414 REMARK 3 L13: 3.9832 L23: -0.3757 REMARK 3 S TENSOR REMARK 3 S11: -0.7721 S12: -0.3698 S13: 0.7414 REMARK 3 S21: 0.4348 S22: 0.2499 S23: 0.1762 REMARK 3 S31: -0.3336 S32: -0.2619 S33: 0.4794 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3400 22.5867 3.5208 REMARK 3 T TENSOR REMARK 3 T11: 0.0727 T22: 0.1026 REMARK 3 T33: 0.0918 T12: -0.0121 REMARK 3 T13: 0.0313 T23: -0.1365 REMARK 3 L TENSOR REMARK 3 L11: 4.8230 L22: 2.1167 REMARK 3 L33: 1.9916 L12: 0.6912 REMARK 3 L13: -0.9926 L23: -0.1969 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: 0.0613 S13: -0.3080 REMARK 3 S21: -0.2062 S22: -0.0390 S23: -0.1650 REMARK 3 S31: 0.0775 S32: 0.0399 S33: 0.2198 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2159 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.032 REMARK 200 RESOLUTION RANGE LOW (A) : 25.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05975 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.13060 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.05 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES BUFFER AT PH 6.5, 32% REMARK 280 JEFFAMINE M-600, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 25.11800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 14.50188 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 21.60067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 25.11800 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 14.50188 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 21.60067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 25.11800 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 14.50188 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 21.60067 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 25.11800 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 14.50188 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 21.60067 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 25.11800 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 14.50188 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 21.60067 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 25.11800 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 14.50188 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.60067 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 29.00377 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 43.20133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 29.00377 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 43.20133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 29.00377 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 43.20133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 29.00377 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 43.20133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 29.00377 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 43.20133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 29.00377 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 43.20133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 -29.00377 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 21.60067 REMARK 350 BIOMT1 5 -0.500000 -0.866025 0.000000 25.11800 REMARK 350 BIOMT2 5 0.866025 -0.500000 0.000000 14.50188 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 21.60067 REMARK 350 BIOMT1 6 -0.500000 0.866025 0.000000 -25.11800 REMARK 350 BIOMT2 6 -0.866025 -0.500000 0.000000 14.50188 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 21.60067 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -258.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 64.80200 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 64.80200 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 64.80200 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 0.000000 1.000000 0.000000 -29.00377 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 21.60067 REMARK 350 BIOMT1 8 -0.500000 -0.866025 0.000000 25.11800 REMARK 350 BIOMT2 8 0.866025 -0.500000 0.000000 14.50188 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 21.60067 REMARK 350 BIOMT1 9 -0.500000 0.866025 0.000000 -25.11800 REMARK 350 BIOMT2 9 -0.866025 -0.500000 0.000000 14.50188 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 21.60067 REMARK 350 BIOMT1 10 -0.500000 0.866025 0.000000 -25.11800 REMARK 350 BIOMT2 10 0.866025 0.500000 0.000000 -14.50188 REMARK 350 BIOMT3 10 0.000000 0.000000 -1.000000 43.20133 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 29.00377 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 43.20133 REMARK 350 BIOMT1 12 -0.500000 -0.866025 0.000000 25.11800 REMARK 350 BIOMT2 12 -0.866025 0.500000 0.000000 -14.50188 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 43.20133 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL B 102 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 201 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 203 O HOH B 203 2665 2.04 REMARK 500 O HOH A 202 O HOH A 202 2555 2.06 REMARK 500 N ORN B 1 OD1 ASP B 8 5665 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: NULL REMARK 800 SITE_DESCRIPTION: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SUR RELATED DB: PDB REMARK 900 RELATED ID: 5SUS RELATED DB: PDB REMARK 900 RELATED ID: 5SUT RELATED DB: PDB DBREF 5SUU A 1 16 PDB 5SUU 5SUU 1 16 DBREF 5SUU B 1 16 PDB 5SUU 5SUU 1 16 SEQRES 1 A 16 ORN CYS VAL PHE PHE CYS GLU ASP ORN ALA ILE ILE SAR SEQRES 2 A 16 LEU ORN VAL SEQRES 1 B 16 ORN CYS VAL PHE PHE CYS GLU ASP ORN ALA ILE ILE SAR SEQRES 2 B 16 LEU ORN VAL HET ORN A 1 19 HET ORN A 9 19 HET SAR A 13 10 HET ORN A 15 19 HET ORN B 1 19 HET ORN B 9 19 HET SAR B 13 10 HET ORN B 15 19 HET CL A 101 1 HET CL A 102 1 HET CL A 103 1 HET IOD B 101 1 HET CL B 102 1 HETNAM ORN L-ORNITHINE HETNAM SAR SARCOSINE HETNAM CL CHLORIDE ION HETNAM IOD IODIDE ION FORMUL 1 ORN 6(C5 H12 N2 O2) FORMUL 1 SAR 2(C3 H7 N O2) FORMUL 3 CL 4(CL 1-) FORMUL 6 IOD I 1- FORMUL 8 HOH *10(H2 O) SHEET 1 AA1 2 CYS A 2 GLU A 7 0 SHEET 2 AA1 2 ILE A 11 VAL A 16 -1 O ILE A 12 N CYS A 6 SHEET 1 AA2 2 CYS B 2 GLU B 7 0 SHEET 2 AA2 2 ILE B 11 VAL B 16 -1 O VAL B 16 N CYS B 2 SSBOND 1 CYS A 2 CYS A 6 1555 3555 2.03 SSBOND 2 CYS B 2 CYS B 6 1555 2665 2.02 LINK C ORN A 1 N CYS A 2 1555 1555 1.37 LINK NE ORN A 1 C VAL A 16 1555 1555 1.38 LINK C ASP A 8 NE ORN A 9 1555 1555 1.38 LINK C ORN A 9 N ALA A 10 1555 1555 1.37 LINK C ILE A 12 N SAR A 13 1555 1555 1.32 LINK C SAR A 13 N LEU A 14 1555 1555 1.32 LINK C LEU A 14 N ORN A 15 1555 1555 1.33 LINK C ORN A 15 N VAL A 16 1555 1555 1.33 LINK C ORN B 1 N CYS B 2 1555 1555 1.37 LINK NE ORN B 1 C VAL B 16 1555 1555 1.38 LINK C ASP B 8 NE ORN B 9 1555 1555 1.38 LINK C ORN B 9 N ALA B 10 1555 1555 1.37 LINK C ILE B 12 N SAR B 13 1555 1555 1.32 LINK C SAR B 13 N LEU B 14 1555 1555 1.31 LINK C LEU B 14 N ORN B 15 1555 1555 1.33 LINK C ORN B 15 N VAL B 16 1555 1555 1.33 SITE 1 AC1 3 LEU A 14 ORN A 15 ORN B 9 SITE 1 AC2 2 ORN A 1 ORN A 15 SITE 1 AC3 2 ORN A 9 ORN B 15 SITE 1 AC4 2 ORN B 1 ORN B 15 SITE 1 AC5 1 ALA B 10 SITE 1 AC6 9 VAL B 3 CYS B 6 GLU B 7 ASP B 8 SITE 2 AC6 9 LEU B 14 ORN B 15 VAL B 16 IOD B 101 SITE 3 AC6 9 HOH B 201 SITE 1 AC7 6 CYS B 2 ASP B 8 LEU B 14 ORN B 15 SITE 2 AC7 6 IOD B 101 HOH B 201 SITE 1 AC8 5 CL A 101 ORN B 1 GLU B 7 ALA B 10 SITE 2 AC8 5 ILE B 11 SITE 1 AC9 6 CL A 101 CYS B 6 GLU B 7 ASP B 8 SITE 2 AC9 6 ILE B 11 CL B 102 SITE 1 AD1 5 PHE B 4 PHE B 5 CYS B 6 ILE B 11 SITE 2 AD1 5 LEU B 14 SITE 1 AD2 6 CYS B 2 VAL B 3 PHE B 4 ILE B 12 SITE 2 AD2 6 ORN B 15 VAL B 16 SITE 1 AD3 7 CL A 103 CYS B 2 VAL B 3 PHE B 4 SITE 2 AD3 7 SAR B 13 VAL B 16 IOD B 101 SITE 1 AD4 5 CL A 103 ORN B 1 CYS B 2 LEU B 14 SITE 2 AD4 5 IOD B 101 CRYST1 50.236 50.236 64.802 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019906 0.011493 0.000000 0.00000 SCALE2 0.000000 0.022986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015432 0.00000 HETATM 1 N ORN A 1 10.801 6.489 12.990 1.00 73.87 N ANISOU 1 N ORN A 1 8986 9930 9151 439 -2445 -393 N HETATM 2 CA ORN A 1 9.403 6.980 12.929 1.00 68.82 C ANISOU 2 CA ORN A 1 8723 9026 8397 455 -2309 -523 C HETATM 3 CB ORN A 1 9.257 8.255 13.774 1.00 68.53 C ANISOU 3 CB ORN A 1 8964 8672 8401 370 -2579 -655 C HETATM 4 CG ORN A 1 7.815 8.752 13.921 1.00 66.28 C ANISOU 4 CG ORN A 1 9039 8140 8005 512 -2450 -833 C HETATM 5 CD ORN A 1 7.127 8.222 15.203 1.00 63.91 C ANISOU 5 CD ORN A 1 9086 7821 7376 871 -2314 -1027 C HETATM 6 NE ORN A 1 5.724 7.946 14.937 1.00 55.77 N ANISOU 6 NE ORN A 1 8174 6815 6203 1025 -1967 -1092 N HETATM 7 C ORN A 1 9.024 7.209 11.431 1.00 60.97 C ANISOU 7 C ORN A 1 7498 8110 7557 223 -2155 -386 C HETATM 8 O ORN A 1 9.816 7.713 10.634 1.00 65.80 O ANISOU 8 O ORN A 1 7742 8857 8401 -105 -2241 -192 O HETATM 9 H2 ORN A 1 11.495 7.225 12.841 1.00 88.65 H HETATM 10 H ORN A 1 11.042 6.066 13.890 1.00 88.65 H HETATM 11 H3 ORN A 1 11.009 5.773 12.290 1.00 88.65 H HETATM 12 HA ORN A 1 8.789 6.156 13.306 1.00 82.58 H HETATM 13 HB2 ORN A 1 9.619 8.023 14.785 1.00 82.23 H HETATM 14 HB3 ORN A 1 9.858 9.062 13.333 1.00 82.23 H HETATM 15 HG2 ORN A 1 7.829 9.847 13.963 1.00 79.54 H HETATM 16 HG3 ORN A 1 7.234 8.442 13.044 1.00 79.54 H HETATM 17 HD2 ORN A 1 7.201 8.981 15.987 1.00 76.69 H HETATM 18 HD3 ORN A 1 7.618 7.294 15.511 1.00 76.69 H HETATM 19 HE1 ORN A 1 5.057 8.594 15.351 1.00 66.93 H