HEADER CIRCADIAN CLOCK PROTEIN 07-AUG-16 5SVV TITLE STRUCTURE AND KINETICS OF THE LOV DOMAIN OF ZEITLUPE DETERMINE ITS TITLE 2 CIRCADIAN FUNCTION IN ARABIDOPSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADAGIO PROTEIN 1; COMPND 3 CHAIN: D, A, B, C; COMPND 4 FRAGMENT: LOV DOMAIN (UNP RESIDUES 29-165); COMPND 5 SYNONYM: CLOCK-ASSOCIATED PAS PROTEIN ZTL,F-BOX ONLY PROTEIN 2B, COMPND 6 FBX2B,FLAVIN-BINDING KELCH REPEAT F-BOX PROTEIN 1-LIKE PROTEIN 2, COMPND 7 FKF1-LIKE PROTEIN 2,LOV KELCH PROTEIN 1,PROTEIN ZEITLUPE; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ADO1, FKL2, LKP1, ZTL, AT5G57360, MSF19.2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LOV, KINETICS, PAS DOMAIN, PHOTORECEPTOR, CIRCADIAN CLOCK PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.ZOLTOWSKI,A.PUDASAINI REVDAT 7 04-OCT-23 5SVV 1 REMARK REVDAT 6 25-DEC-19 5SVV 1 REMARK REVDAT 5 28-MAR-18 5SVV 1 JRNL REVDAT 4 28-FEB-18 5SVV 1 JRNL REVDAT 3 27-SEP-17 5SVV 1 REMARK REVDAT 2 15-MAR-17 5SVV 1 JRNL REVDAT 1 08-MAR-17 5SVV 0 JRNL AUTH A.PUDASAINI,J.S.SHIM,Y.H.SONG,H.SHI,T.KIBA,D.E.SOMERS, JRNL AUTH 2 T.IMAIZUMI,B.D.ZOLTOWSKI JRNL TITL KINETICS OF THE LOV DOMAIN OF ZEITLUPE DETERMINE ITS JRNL TITL 2 CIRCADIAN FUNCTION INARABIDOPSIS. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28244872 JRNL DOI 10.7554/ELIFE.21646 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 49486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3721 - 5.4998 0.92 2644 120 0.1941 0.2260 REMARK 3 2 5.4998 - 4.3677 0.97 2635 139 0.1447 0.1812 REMARK 3 3 4.3677 - 3.8163 0.99 2644 144 0.1475 0.1661 REMARK 3 4 3.8163 - 3.4676 1.00 2633 166 0.1475 0.1766 REMARK 3 5 3.4676 - 3.2192 1.00 2634 140 0.1613 0.2115 REMARK 3 6 3.2192 - 3.0295 1.00 2609 148 0.1644 0.2343 REMARK 3 7 3.0295 - 2.8779 1.00 2637 142 0.1652 0.2001 REMARK 3 8 2.8779 - 2.7527 1.00 2629 105 0.1713 0.2370 REMARK 3 9 2.7527 - 2.6467 1.00 2628 138 0.1667 0.1998 REMARK 3 10 2.6467 - 2.5554 1.00 2618 138 0.1637 0.2165 REMARK 3 11 2.5554 - 2.4755 1.00 2599 145 0.1640 0.2030 REMARK 3 12 2.4755 - 2.4048 1.00 2570 146 0.1621 0.1918 REMARK 3 13 2.4048 - 2.3415 1.00 2626 147 0.1621 0.2084 REMARK 3 14 2.3415 - 2.2844 1.00 2553 151 0.1665 0.1817 REMARK 3 15 2.2844 - 2.2324 1.00 2589 128 0.1703 0.2197 REMARK 3 16 2.2324 - 2.1849 1.00 2590 140 0.1780 0.2216 REMARK 3 17 2.1849 - 2.1412 1.00 2583 152 0.1831 0.2233 REMARK 3 18 2.1412 - 2.1008 0.98 2554 122 0.1980 0.2291 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4227 REMARK 3 ANGLE : 1.464 5749 REMARK 3 CHIRALITY : 0.067 628 REMARK 3 PLANARITY : 0.007 742 REMARK 3 DIHEDRAL : 19.018 1584 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49510 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.25100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3D72 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.2 M SODIUM REMARK 280 ACETATE TRIHYDRATE, 30% W/V PEG 4K, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.25833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.51667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 132.51667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.25833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 1 REMARK 465 GLY D 2 REMARK 465 PRO D 3 REMARK 465 ILE D 4 REMARK 465 PRO D 5 REMARK 465 TYR D 6 REMARK 465 PRO D 7 REMARK 465 VAL D 8 REMARK 465 GLY D 9 REMARK 465 ASN D 10 REMARK 465 LEU D 11 REMARK 465 LEU D 12 REMARK 465 HIS D 13 REMARK 465 THR D 14 REMARK 465 ALA D 15 REMARK 465 GLY D 136 REMARK 465 PRO D 137 REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 ILE A 4 REMARK 465 PRO A 5 REMARK 465 TYR A 6 REMARK 465 PRO A 7 REMARK 465 VAL A 8 REMARK 465 GLY A 9 REMARK 465 ASN A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 HIS A 13 REMARK 465 GLU A 130 REMARK 465 THR A 131 REMARK 465 ASP A 132 REMARK 465 ILE A 133 REMARK 465 ASP A 134 REMARK 465 LEU A 135 REMARK 465 GLY A 136 REMARK 465 PRO A 137 REMARK 465 GLY B 1 REMARK 465 GLY B 2 REMARK 465 GLY C 1 REMARK 465 GLY C 2 REMARK 465 PRO C 3 REMARK 465 ILE C 4 REMARK 465 PRO C 5 REMARK 465 TYR C 6 REMARK 465 PRO C 7 REMARK 465 VAL C 8 REMARK 465 GLY C 9 REMARK 465 ASN C 10 REMARK 465 LEU C 11 REMARK 465 LEU C 12 REMARK 465 HIS C 13 REMARK 465 THR C 14 REMARK 465 ALA C 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 130 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG C 80 O3P FMN C 5201 1.53 REMARK 500 OD1 ASP D 99 OG SER D 101 2.11 REMARK 500 O TYR D 113 O HOH D 5301 2.12 REMARK 500 O PHE C 63 O HOH C 5301 2.14 REMARK 500 NH2 ARG D 66 O HOH D 5302 2.16 REMARK 500 O HOH A 5375 O HOH B 5355 2.16 REMARK 500 OE1 GLU C 92 O HOH C 5302 2.17 REMARK 500 NH1 ARG B 45 OE2 GLU B 47 2.18 REMARK 500 O HOH B 5379 O HOH B 5398 2.18 REMARK 500 O HOH B 5318 O HOH B 5328 2.19 REMARK 500 O HOH C 5331 O HOH C 5351 2.19 REMARK 500 OE1 GLU D 26 O HOH D 5303 2.19 REMARK 500 O HOH B 5317 O HOH B 5389 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B 99 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 108 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 28 33.32 70.01 REMARK 500 ASP D 115 -53.05 -176.46 REMARK 500 ASP D 116 26.46 -73.82 REMARK 500 ASP B 134 112.45 -163.95 REMARK 500 ASP C 28 36.13 70.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B5405 DISTANCE = 6.01 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN D 5201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 5201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 5202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 5203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 5201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 5202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN C 5201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT C 5202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 5203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SVG RELATED DB: PDB REMARK 900 RELATED ID: 5SVU RELATED DB: PDB REMARK 900 RELATED ID: 5SVW RELATED DB: PDB DBREF 5SVV D 1 137 UNP Q94BT6 ADO1_ARATH 29 165 DBREF 5SVV A 1 137 UNP Q94BT6 ADO1_ARATH 29 165 DBREF 5SVV B 1 137 UNP Q94BT6 ADO1_ARATH 29 165 DBREF 5SVV C 1 137 UNP Q94BT6 ADO1_ARATH 29 165 SEQADV 5SVV ILE D 20 UNP Q94BT6 VAL 48 ENGINEERED MUTATION SEQADV 5SVV ARG D 52 UNP Q94BT6 GLY 80 ENGINEERED MUTATION SEQADV 5SVV ILE A 20 UNP Q94BT6 VAL 48 ENGINEERED MUTATION SEQADV 5SVV ARG A 52 UNP Q94BT6 GLY 80 ENGINEERED MUTATION SEQADV 5SVV ILE B 20 UNP Q94BT6 VAL 48 ENGINEERED MUTATION SEQADV 5SVV ARG B 52 UNP Q94BT6 GLY 80 ENGINEERED MUTATION SEQADV 5SVV ILE C 20 UNP Q94BT6 VAL 48 ENGINEERED MUTATION SEQADV 5SVV ARG C 52 UNP Q94BT6 GLY 80 ENGINEERED MUTATION SEQRES 1 D 137 GLY GLY PRO ILE PRO TYR PRO VAL GLY ASN LEU LEU HIS SEQRES 2 D 137 THR ALA PRO CYS GLY PHE ILE VAL THR ASP ALA VAL GLU SEQRES 3 D 137 PRO ASP GLN PRO ILE ILE TYR VAL ASN THR VAL PHE GLU SEQRES 4 D 137 MET VAL THR GLY TYR ARG ALA GLU GLU VAL LEU GLY ARG SEQRES 5 D 137 ASN CYS ARG PHE LEU GLN CYS ARG GLY PRO PHE ALA LYS SEQRES 6 D 137 ARG ARG HIS PRO LEU VAL ASP SER MET VAL VAL SER GLU SEQRES 7 D 137 ILE ARG LYS CYS ILE ASP GLU GLY ILE GLU PHE GLN GLY SEQRES 8 D 137 GLU LEU LEU ASN PHE ARG LYS ASP GLY SER PRO LEU MET SEQRES 9 D 137 ASN ARG LEU ARG LEU THR PRO ILE TYR GLY ASP ASP ASP SEQRES 10 D 137 THR ILE THR HIS ILE ILE GLY ILE GLN PHE PHE ILE GLU SEQRES 11 D 137 THR ASP ILE ASP LEU GLY PRO SEQRES 1 A 137 GLY GLY PRO ILE PRO TYR PRO VAL GLY ASN LEU LEU HIS SEQRES 2 A 137 THR ALA PRO CYS GLY PHE ILE VAL THR ASP ALA VAL GLU SEQRES 3 A 137 PRO ASP GLN PRO ILE ILE TYR VAL ASN THR VAL PHE GLU SEQRES 4 A 137 MET VAL THR GLY TYR ARG ALA GLU GLU VAL LEU GLY ARG SEQRES 5 A 137 ASN CYS ARG PHE LEU GLN CYS ARG GLY PRO PHE ALA LYS SEQRES 6 A 137 ARG ARG HIS PRO LEU VAL ASP SER MET VAL VAL SER GLU SEQRES 7 A 137 ILE ARG LYS CYS ILE ASP GLU GLY ILE GLU PHE GLN GLY SEQRES 8 A 137 GLU LEU LEU ASN PHE ARG LYS ASP GLY SER PRO LEU MET SEQRES 9 A 137 ASN ARG LEU ARG LEU THR PRO ILE TYR GLY ASP ASP ASP SEQRES 10 A 137 THR ILE THR HIS ILE ILE GLY ILE GLN PHE PHE ILE GLU SEQRES 11 A 137 THR ASP ILE ASP LEU GLY PRO SEQRES 1 B 137 GLY GLY PRO ILE PRO TYR PRO VAL GLY ASN LEU LEU HIS SEQRES 2 B 137 THR ALA PRO CYS GLY PHE ILE VAL THR ASP ALA VAL GLU SEQRES 3 B 137 PRO ASP GLN PRO ILE ILE TYR VAL ASN THR VAL PHE GLU SEQRES 4 B 137 MET VAL THR GLY TYR ARG ALA GLU GLU VAL LEU GLY ARG SEQRES 5 B 137 ASN CYS ARG PHE LEU GLN CYS ARG GLY PRO PHE ALA LYS SEQRES 6 B 137 ARG ARG HIS PRO LEU VAL ASP SER MET VAL VAL SER GLU SEQRES 7 B 137 ILE ARG LYS CYS ILE ASP GLU GLY ILE GLU PHE GLN GLY SEQRES 8 B 137 GLU LEU LEU ASN PHE ARG LYS ASP GLY SER PRO LEU MET SEQRES 9 B 137 ASN ARG LEU ARG LEU THR PRO ILE TYR GLY ASP ASP ASP SEQRES 10 B 137 THR ILE THR HIS ILE ILE GLY ILE GLN PHE PHE ILE GLU SEQRES 11 B 137 THR ASP ILE ASP LEU GLY PRO SEQRES 1 C 137 GLY GLY PRO ILE PRO TYR PRO VAL GLY ASN LEU LEU HIS SEQRES 2 C 137 THR ALA PRO CYS GLY PHE ILE VAL THR ASP ALA VAL GLU SEQRES 3 C 137 PRO ASP GLN PRO ILE ILE TYR VAL ASN THR VAL PHE GLU SEQRES 4 C 137 MET VAL THR GLY TYR ARG ALA GLU GLU VAL LEU GLY ARG SEQRES 5 C 137 ASN CYS ARG PHE LEU GLN CYS ARG GLY PRO PHE ALA LYS SEQRES 6 C 137 ARG ARG HIS PRO LEU VAL ASP SER MET VAL VAL SER GLU SEQRES 7 C 137 ILE ARG LYS CYS ILE ASP GLU GLY ILE GLU PHE GLN GLY SEQRES 8 C 137 GLU LEU LEU ASN PHE ARG LYS ASP GLY SER PRO LEU MET SEQRES 9 C 137 ASN ARG LEU ARG LEU THR PRO ILE TYR GLY ASP ASP ASP SEQRES 10 C 137 THR ILE THR HIS ILE ILE GLY ILE GLN PHE PHE ILE GLU SEQRES 11 C 137 THR ASP ILE ASP LEU GLY PRO HET FMN D5201 31 HET FMN A5201 31 HET ACT A5202 7 HET GOL A5203 14 HET FMN B5201 31 HET ACT B5202 7 HET FMN C5201 31 HET ACT C5202 7 HET GOL C5203 14 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 FMN 4(C17 H21 N4 O9 P) FORMUL 7 ACT 3(C2 H3 O2 1-) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 14 HOH *343(H2 O) HELIX 1 AA1 ASN D 35 GLY D 43 1 9 HELIX 2 AA2 ARG D 45 VAL D 49 5 5 HELIX 3 AA3 ASN D 53 CYS D 59 5 7 HELIX 4 AA4 ASP D 72 GLU D 85 1 14 HELIX 5 AA5 ASN A 35 GLY A 43 1 9 HELIX 6 AA6 ARG A 45 LEU A 50 1 6 HELIX 7 AA7 ASN A 53 CYS A 59 5 7 HELIX 8 AA8 ASP A 72 GLY A 86 1 15 HELIX 9 AA9 LEU B 11 ALA B 15 5 5 HELIX 10 AB1 ASN B 35 GLY B 43 1 9 HELIX 11 AB2 ARG B 45 LEU B 50 1 6 HELIX 12 AB3 ASN B 53 CYS B 59 5 7 HELIX 13 AB4 ASP B 72 GLU B 85 1 14 HELIX 14 AB5 ASN C 35 GLY C 43 1 9 HELIX 15 AB6 ARG C 45 VAL C 49 5 5 HELIX 16 AB7 ASN C 53 CYS C 59 5 7 HELIX 17 AB8 ASP C 72 GLY C 86 1 15 SHEET 1 AA1 5 ILE D 31 VAL D 34 0 SHEET 2 AA1 5 GLY D 18 ASP D 23 -1 N VAL D 21 O ILE D 32 SHEET 3 AA1 5 ILE D 119 GLU D 130 -1 O GLN D 126 N GLY D 18 SHEET 4 AA1 5 PRO D 102 TYR D 113 -1 N MET D 104 O ILE D 129 SHEET 5 AA1 5 PHE D 89 PHE D 96 -1 N ASN D 95 O LEU D 103 SHEET 1 AA2 5 ILE A 31 VAL A 34 0 SHEET 2 AA2 5 GLY A 18 ASP A 23 -1 N VAL A 21 O ILE A 32 SHEET 3 AA2 5 ILE A 119 ILE A 129 -1 O GLY A 124 N ILE A 20 SHEET 4 AA2 5 PRO A 102 TYR A 113 -1 N ILE A 112 O HIS A 121 SHEET 5 AA2 5 PHE A 89 PHE A 96 -1 N ASN A 95 O LEU A 103 SHEET 1 AA3 5 ILE B 31 VAL B 34 0 SHEET 2 AA3 5 GLY B 18 ASP B 23 -1 N VAL B 21 O ILE B 32 SHEET 3 AA3 5 ILE B 119 ILE B 129 -1 O GLY B 124 N ILE B 20 SHEET 4 AA3 5 PRO B 102 TYR B 113 -1 N ARG B 106 O PHE B 127 SHEET 5 AA3 5 PHE B 89 PHE B 96 -1 N ASN B 95 O LEU B 103 SHEET 1 AA4 5 ILE C 31 VAL C 34 0 SHEET 2 AA4 5 GLY C 18 ASP C 23 -1 N VAL C 21 O ILE C 32 SHEET 3 AA4 5 ILE C 119 ILE C 129 -1 O GLN C 126 N GLY C 18 SHEET 4 AA4 5 PRO C 102 TYR C 113 -1 N ILE C 112 O HIS C 121 SHEET 5 AA4 5 PHE C 89 PHE C 96 -1 N ASN C 95 O LEU C 103 SITE 1 AC1 26 ARG C 67 SER C 73 HOH C5323 THR D 22 SITE 2 AC1 26 ASN D 53 CYS D 54 ARG D 55 LEU D 57 SITE 3 AC1 26 GLN D 58 VAL D 76 ARG D 80 ILE D 83 SITE 4 AC1 26 LEU D 93 ASN D 95 ASN D 105 LEU D 107 SITE 5 AC1 26 LEU D 109 ILE D 122 GLY D 124 GLN D 126 SITE 6 AC1 26 HOH D5314 HOH D5316 HOH D5328 HOH D5330 SITE 7 AC1 26 HOH D5338 HOH D5359 SITE 1 AC2 25 THR A 22 ASN A 53 CYS A 54 ARG A 55 SITE 2 AC2 25 LEU A 57 GLN A 58 VAL A 76 ARG A 80 SITE 3 AC2 25 ILE A 83 LEU A 93 ASN A 95 ASN A 105 SITE 4 AC2 25 LEU A 107 LEU A 109 ILE A 122 GLY A 124 SITE 5 AC2 25 GLN A 126 HOH A5308 HOH A5312 HOH A5348 SITE 6 AC2 25 HOH A5355 HOH A5357 ARG B 67 SER B 73 SITE 7 AC2 25 HOH B5346 SITE 1 AC3 2 ARG A 108 TYR B 113 SITE 1 AC4 5 GLY A 114 THR A 120 HOH A5303 ARG B 106 SITE 2 AC4 5 PHE B 127 SITE 1 AC5 24 ILE B 20 THR B 22 ASN B 53 CYS B 54 SITE 2 AC5 24 ARG B 55 LEU B 57 GLN B 58 VAL B 76 SITE 3 AC5 24 ARG B 80 ILE B 83 LEU B 93 ASN B 95 SITE 4 AC5 24 ASN B 105 LEU B 107 LEU B 109 ILE B 122 SITE 5 AC5 24 GLY B 124 GLN B 126 HOH B5302 HOH B5314 SITE 6 AC5 24 HOH B5327 HOH B5343 HOH B5347 HOH B5352 SITE 1 AC6 4 ALA B 15 MET B 40 VAL B 41 HOH B5365 SITE 1 AC7 21 ILE C 20 THR C 22 ASN C 53 CYS C 54 SITE 2 AC7 21 ARG C 55 LEU C 57 GLN C 58 VAL C 76 SITE 3 AC7 21 ARG C 80 ILE C 83 ASN C 95 ASN C 105 SITE 4 AC7 21 LEU C 107 LEU C 109 ILE C 122 GLN C 126 SITE 5 AC7 21 HOH C5306 HOH C5307 HOH C5322 HOH C5324 SITE 6 AC7 21 HOH C5338 SITE 1 AC8 3 TYR C 33 ASN C 35 THR C 36 SITE 1 AC9 9 ARG A 67 HIS A 68 PRO A 69 VAL A 71 SITE 2 AC9 9 SER A 73 HOH A5360 LEU B 70 ARG C 60 SITE 3 AC9 9 HIS C 68 CRYST1 85.427 85.427 198.775 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011706 0.006758 0.000000 0.00000 SCALE2 0.000000 0.013517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005031 0.00000