data_5SWE # _entry.id 5SWE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5SWE pdb_00005swe 10.2210/pdb5swe/pdb WWPDB D_1000223255 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '5E54 contains the same RNA in the ligand-free state' 5E54 unspecified PDB . 5SWD unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5SWE _pdbx_database_status.recvd_initial_deposition_date 2016-08-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Stagno, J.R.' 1 ? 'Wang, Y.-X.' 2 ? 'Liu, Y.' 3 ? 'Bhandari, Y.R.' 4 ? 'Conrad, C.E.' 5 ? 'Nelson, G.' 6 ? 'Li, C.' 7 ? 'Wendel, D.R.' 8 ? 'White, T.A.' 9 ? 'Barty, A.' 10 ? 'Tuckey, R.A.' 11 ? 'Zatsepin, N.A.' 12 ? 'Grant, T.D.' 13 ? 'Fromme, P.' 14 ? 'Tan, K.' 15 ? 'Ji, X.' 16 0000-0001-6942-1514 'Spence, J.C.H.' 17 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 541 _citation.language ? _citation.page_first 242 _citation.page_last 246 _citation.title 'Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature20599 _citation.pdbx_database_id_PubMed 27841871 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stagno, J.R.' 1 ? primary 'Liu, Y.' 2 ? primary 'Bhandari, Y.R.' 3 ? primary 'Conrad, C.E.' 4 ? primary 'Panja, S.' 5 ? primary 'Swain, M.' 6 ? primary 'Fan, L.' 7 ? primary 'Nelson, G.' 8 ? primary 'Li, C.' 9 ? primary 'Wendel, D.R.' 10 ? primary 'White, T.A.' 11 ? primary 'Coe, J.D.' 12 ? primary 'Wiedorn, M.O.' 13 ? primary 'Knoska, J.' 14 ? primary 'Oberthuer, D.' 15 ? primary 'Tuckey, R.A.' 16 ? primary 'Yu, P.' 17 ? primary 'Dyba, M.' 18 ? primary 'Tarasov, S.G.' 19 ? primary 'Weierstall, U.' 20 ? primary 'Grant, T.D.' 21 ? primary 'Schwieters, C.D.' 22 ? primary 'Zhang, J.' 23 ? primary ;Ferre-D'Amare, A.R. ; 24 ? primary 'Fromme, P.' 25 ? primary 'Draper, D.E.' 26 ? primary 'Liang, M.' 27 ? primary 'Hunter, M.S.' 28 ? primary 'Boutet, S.' 29 ? primary 'Tan, K.' 30 ? primary 'Zuo, X.' 31 ? primary 'Ji, X.' 32 0000-0001-6942-1514 primary 'Barty, A.' 33 ? primary 'Zatsepin, N.A.' 34 ? primary 'Chapman, H.N.' 35 ? primary 'Spence, J.C.' 36 ? primary 'Woodson, S.A.' 37 ? primary 'Wang, Y.X.' 38 ? # _cell.length_a 49.900 _cell.length_b 154.900 _cell.length_c 25.200 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 5SWE _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 5SWE _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Vibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domain' 22687.383 1 ? ? ? ? 2 non-polymer syn ADENINE 135.127 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_seq_one_letter_code_can GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 A n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 U n 1 11 A n 1 12 A n 1 13 U n 1 14 C n 1 15 C n 1 16 U n 1 17 A n 1 18 A n 1 19 U n 1 20 G n 1 21 A n 1 22 U n 1 23 A n 1 24 U n 1 25 G n 1 26 G n 1 27 U n 1 28 U n 1 29 U n 1 30 G n 1 31 G n 1 32 G n 1 33 A n 1 34 G n 1 35 U n 1 36 U n 1 37 U n 1 38 C n 1 39 U n 1 40 A n 1 41 C n 1 42 C n 1 43 A n 1 44 A n 1 45 G n 1 46 A n 1 47 G n 1 48 C n 1 49 C n 1 50 U n 1 51 U n 1 52 A n 1 53 A n 1 54 A n 1 55 C n 1 56 U n 1 57 C n 1 58 U n 1 59 U n 1 60 G n 1 61 A n 1 62 U n 1 63 U n 1 64 A n 1 65 U n 1 66 C n 1 67 U n 1 68 U n 1 69 C n 1 70 C n 1 71 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 71 _pdbx_entity_src_syn.organism_scientific 'Vibrio vulnificus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 672 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5SWE _struct_ref.pdbx_db_accession 5SWE _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5SWE _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 71 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5SWE _struct_ref_seq.db_align_beg 13 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 83 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 13 _struct_ref_seq.pdbx_auth_seq_align_end 83 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5SWE _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'BATCH MODE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;40 mM sodium cacodylate, pH 6.5, 80 mM potassium chloride, 100 mM magnesium chloride, 12 mM spermine tetrahydrochloride, 65% v/v (+/-)-2-methyl-2,4-pentanediol ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'CS-PAD CXI-1' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-06-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'KB mirror' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.3 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'FREE ELECTRON LASER' _diffrn_source.target ? _diffrn_source.type 'SLAC LCLS BEAMLINE CXI' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.3 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline CXI _diffrn_source.pdbx_synchrotron_site 'SLAC LCLS' # _reflns.B_iso_Wilson_estimate 66.4 _reflns.entry_id 5SWE _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.0 _reflns.d_resolution_low 26.32 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4115 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 1.37 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split 0.6689 # _reflns_shell.d_res_high 3.00 _reflns_shell.d_res_low 3.31 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all 945 _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 87 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 13 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split 1.0157 # _refine.entry_id 5SWE _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 3.0000 _refine.ls_d_res_low 26.3200 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 94.9300 _refine.ls_number_reflns_obs 3919 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.3503 _refine.ls_R_factor_R_work 0.3489 _refine.ls_wR_factor_R_work 0.2176 _refine.ls_R_factor_R_free 0.3790 _refine.ls_wR_factor_R_free 0.2579 _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 196 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 58.0620 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 4.3200 _refine.aniso_B[2][2] -2.9100 _refine.aniso_B[3][3] -1.4100 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.8360 _refine.correlation_coeff_Fo_to_Fc_free 0.7180 _refine.overall_SU_R_Cruickshank_DPI 0.6685 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free 0.2762 _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.7300 _refine.overall_SU_ML 1.4890 _refine.overall_SU_B 79.0470 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 4TZX _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.6535 _refine.B_iso_max 166.850 _refine.B_iso_min 30.140 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.0000 _refine_hist.d_res_low 26.3200 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1512 _refine_hist.pdbx_number_residues_total 71 _refine_hist.pdbx_B_iso_mean_ligand 63.22 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1502 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1688 0.003 0.011 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2623 0.856 1.302 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 284 0.070 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 731 0.004 0.020 ? ? 'X-RAY DIFFRACTION' r_scbond_it 1688 1.910 5.804 ? ? # _refine_ls_shell.d_res_high 3.0000 _refine_ls_shell.d_res_low 3.0770 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 75.7200 _refine_ls_shell.number_reflns_R_work 230 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.4210 _refine_ls_shell.R_factor_R_free 0.4070 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 7 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 237 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _struct.entry_id 5SWE _struct.title ;Ligand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallography ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5SWE _struct_keywords.text 'adenine riboswitch, purine riboswitch, ligand mixing, RNA, gene regulation, X-ray free electron laser' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 71 N4 ? ? X G 13 X C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 70 N3 ? ? X G 14 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 70 O2 ? ? X G 14 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 70 N4 ? ? X G 14 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 69 N3 ? ? X G 15 X C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 69 O2 ? ? X G 15 X C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 69 N4 ? ? X G 15 X C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 68 N3 ? ? X A 16 X U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 68 O4 ? ? X A 16 X U 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 67 N3 ? ? X A 17 X U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 67 O4 ? ? X A 17 X U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 66 N3 ? ? X G 18 X C 78 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog13 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 65 N3 ? ? X A 19 X U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 65 O4 ? ? X A 19 X U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 64 N1 ? ? X U 20 X A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 64 N6 ? ? X U 20 X A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 63 N3 ? ? X A 21 X U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 63 O4 ? ? X A 21 X U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 10 O4 ? ? ? 1_555 A G 34 N1 ? ? X U 22 X G 46 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog20 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 40 N1 ? ? X U 22 X A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 40 N6 ? ? X U 22 X A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 11 N1 ? ? ? 1_555 A G 34 N2 ? ? X A 23 X G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog23 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 34 N3 ? ? X A 23 X G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog24 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 33 N1 ? ? X U 25 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 33 N6 ? ? X U 25 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 32 N1 ? ? X C 26 X G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 32 O6 ? ? X C 26 X G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 32 N2 ? ? X C 26 X G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 31 N1 ? ? X C 27 X G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 31 O6 ? ? X C 27 X G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 31 N2 ? ? X C 27 X G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 16 N3 ? ? ? 1_555 A G 30 O6 ? ? X U 28 X G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog33 hydrog ? ? A U 16 O2 ? ? ? 1_555 A G 30 N1 ? ? X U 28 X G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog34 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 29 N3 ? ? X A 29 X U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 29 O4 ? ? X A 29 X U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 28 N3 ? ? X A 30 X U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 28 O4 ? ? X A 30 X U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 19 N3 ? ? ? 1_555 A U 27 O4 ? ? X U 31 X U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog39 hydrog ? ? A U 19 O2 ? ? ? 1_555 A U 27 N3 ? ? X U 31 X U 39 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog40 hydrog ? ? A A 21 N1 ? ? ? 1_555 A A 54 N6 ? ? X A 33 X A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog41 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 54 N7 ? ? X A 33 X A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog42 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 53 N7 ? ? X U 34 X A 65 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog43 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 52 N6 ? ? X A 35 X A 64 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog44 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 49 N3 ? ? X G 37 X C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 49 O2 ? ? X G 37 X C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 49 N4 ? ? X G 37 X C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 48 N3 ? ? X G 38 X C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 48 O2 ? ? X G 38 X C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 48 N4 ? ? X G 38 X C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 54 N1 ? ? X G 38 X A 66 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog51 hydrog ? ? A G 34 N1 ? ? ? 1_555 A C 41 N3 ? ? X G 46 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 34 N2 ? ? ? 1_555 A C 41 O2 ? ? X G 46 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 34 O6 ? ? ? 1_555 A C 41 N4 ? ? X G 46 X C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 35 N3 ? ? ? 1_555 A U 39 O4 ? ? X U 47 X U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog55 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 64 N3 ? ? X U 49 X A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog56 hydrog ? ? A C 38 N4 ? ? ? 1_555 A U 63 O2 ? ? X C 50 X U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog57 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 60 N1 ? ? X C 54 X G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 60 O6 ? ? X C 54 X G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 60 N2 ? ? X C 54 X G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 43 N1 ? ? ? 1_555 A U 59 N3 ? ? X A 55 X U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 43 N6 ? ? ? 1_555 A U 59 O4 ? ? X A 55 X U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A A 44 N1 ? ? ? 1_555 A U 58 N3 ? ? X A 56 X U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 58 O4 ? ? X A 56 X U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 57 N3 ? ? X G 57 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 57 O2 ? ? X G 57 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 57 N4 ? ? X G 57 X C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 46 N1 ? ? ? 1_555 A U 56 N3 ? ? X A 58 X U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 46 N6 ? ? ? 1_555 A U 56 O4 ? ? X A 58 X U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 47 N1 ? ? ? 1_555 A C 55 N3 ? ? X G 59 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 47 N2 ? ? ? 1_555 A C 55 O2 ? ? X G 59 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 47 O6 ? ? ? 1_555 A C 55 N4 ? ? X G 59 X C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 49 O2 ? ? ? 1_555 A A 53 N6 ? ? X C 61 X A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id X _struct_site.pdbx_auth_comp_id ADE _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'binding site for residue ADE X 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A A 9 ? A X 21 . ? 1_555 ? 2 AC1 6 U A 10 ? U X 22 . ? 1_555 ? 3 AC1 6 U A 35 ? U X 47 . ? 1_555 ? 4 AC1 6 U A 39 ? U X 51 . ? 1_555 ? 5 AC1 6 A A 40 ? A X 52 . ? 1_555 ? 6 AC1 6 U A 63 ? U X 75 . ? 1_555 ? # _atom_sites.entry_id 5SWE _atom_sites.fract_transf_matrix[1][1] 0.020040 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006456 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039683 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 13 13 G G X . n A 1 2 G 2 14 14 G G X . n A 1 3 G 3 15 15 G G X . n A 1 4 A 4 16 16 A A X . n A 1 5 A 5 17 17 A A X . n A 1 6 G 6 18 18 G G X . n A 1 7 A 7 19 19 A A X . n A 1 8 U 8 20 20 U U X . n A 1 9 A 9 21 21 A A X . n A 1 10 U 10 22 22 U U X . n A 1 11 A 11 23 23 A A X . n A 1 12 A 12 24 24 A A X . n A 1 13 U 13 25 25 U U X . n A 1 14 C 14 26 26 C C X . n A 1 15 C 15 27 27 C C X . n A 1 16 U 16 28 28 U U X . n A 1 17 A 17 29 29 A A X . n A 1 18 A 18 30 30 A A X . n A 1 19 U 19 31 31 U U X . n A 1 20 G 20 32 32 G G X . n A 1 21 A 21 33 33 A A X . n A 1 22 U 22 34 34 U U X . n A 1 23 A 23 35 35 A A X . n A 1 24 U 24 36 36 U U X . n A 1 25 G 25 37 37 G G X . n A 1 26 G 26 38 38 G G X . n A 1 27 U 27 39 39 U U X . n A 1 28 U 28 40 40 U U X . n A 1 29 U 29 41 41 U U X . n A 1 30 G 30 42 42 G G X . n A 1 31 G 31 43 43 G G X . n A 1 32 G 32 44 44 G G X . n A 1 33 A 33 45 45 A A X . n A 1 34 G 34 46 46 G G X . n A 1 35 U 35 47 47 U U X . n A 1 36 U 36 48 48 U U X . n A 1 37 U 37 49 49 U U X . n A 1 38 C 38 50 50 C C X . n A 1 39 U 39 51 51 U U X . n A 1 40 A 40 52 52 A A X . n A 1 41 C 41 53 53 C C X . n A 1 42 C 42 54 54 C C X . n A 1 43 A 43 55 55 A A X . n A 1 44 A 44 56 56 A A X . n A 1 45 G 45 57 57 G G X . n A 1 46 A 46 58 58 A A X . n A 1 47 G 47 59 59 G G X . n A 1 48 C 48 60 60 C C X . n A 1 49 C 49 61 61 C C X . n A 1 50 U 50 62 62 U U X . n A 1 51 U 51 63 63 U U X . n A 1 52 A 52 64 64 A A X . n A 1 53 A 53 65 65 A A X . n A 1 54 A 54 66 66 A A X . n A 1 55 C 55 67 67 C C X . n A 1 56 U 56 68 68 U U X . n A 1 57 C 57 69 69 C C X . n A 1 58 U 58 70 70 U U X . n A 1 59 U 59 71 71 U U X . n A 1 60 G 60 72 72 G G X . n A 1 61 A 61 73 73 A A X . n A 1 62 U 62 74 74 U U X . n A 1 63 U 63 75 75 U U X . n A 1 64 A 64 76 76 A A X . n A 1 65 U 65 77 77 U U X . n A 1 66 C 66 78 78 C C X . n A 1 67 U 67 79 79 U U X . n A 1 68 U 68 80 80 U U X . n A 1 69 C 69 81 81 C C X . n A 1 70 C 70 82 82 C C X . n A 1 71 C 71 83 83 C C X . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ADE _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 101 _pdbx_nonpoly_scheme.pdb_mon_id ADE _pdbx_nonpoly_scheme.auth_mon_id ADE _pdbx_nonpoly_scheme.pdb_strand_id X _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-11-23 2 'Structure model' 1 1 2017-01-25 3 'Structure model' 1 2 2017-10-11 4 'Structure model' 1 3 2018-02-14 5 'Structure model' 1 4 2023-08-30 6 'Structure model' 1 5 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Data collection' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Structure summary' 8 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' reflns 2 3 'Structure model' reflns_shell 3 4 'Structure model' diffrn_source 4 5 'Structure model' audit_author 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' citation_author 8 5 'Structure model' database_2 9 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_reflns.pdbx_R_split' 2 3 'Structure model' '_reflns_shell.pdbx_R_split' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 5 'Structure model' '_audit_author.identifier_ORCID' 5 5 'Structure model' '_citation_author.identifier_ORCID' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0073 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrystFEL ? ? ? 0.6.2 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? CrystFEL ? ? ? 0.6.2 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ADE N9 N Y N 38 ADE C8 C Y N 39 ADE N7 N Y N 40 ADE C5 C Y N 41 ADE C6 C Y N 42 ADE N6 N N N 43 ADE N1 N Y N 44 ADE C2 C Y N 45 ADE N3 N Y N 46 ADE C4 C Y N 47 ADE HN9 H N N 48 ADE H8 H N N 49 ADE HN61 H N N 50 ADE HN62 H N N 51 ADE H2 H N N 52 C OP3 O N N 53 C P P N N 54 C OP1 O N N 55 C OP2 O N N 56 C "O5'" O N N 57 C "C5'" C N N 58 C "C4'" C N R 59 C "O4'" O N N 60 C "C3'" C N S 61 C "O3'" O N N 62 C "C2'" C N R 63 C "O2'" O N N 64 C "C1'" C N R 65 C N1 N N N 66 C C2 C N N 67 C O2 O N N 68 C N3 N N N 69 C C4 C N N 70 C N4 N N N 71 C C5 C N N 72 C C6 C N N 73 C HOP3 H N N 74 C HOP2 H N N 75 C "H5'" H N N 76 C "H5''" H N N 77 C "H4'" H N N 78 C "H3'" H N N 79 C "HO3'" H N N 80 C "H2'" H N N 81 C "HO2'" H N N 82 C "H1'" H N N 83 C H41 H N N 84 C H42 H N N 85 C H5 H N N 86 C H6 H N N 87 G OP3 O N N 88 G P P N N 89 G OP1 O N N 90 G OP2 O N N 91 G "O5'" O N N 92 G "C5'" C N N 93 G "C4'" C N R 94 G "O4'" O N N 95 G "C3'" C N S 96 G "O3'" O N N 97 G "C2'" C N R 98 G "O2'" O N N 99 G "C1'" C N R 100 G N9 N Y N 101 G C8 C Y N 102 G N7 N Y N 103 G C5 C Y N 104 G C6 C N N 105 G O6 O N N 106 G N1 N N N 107 G C2 C N N 108 G N2 N N N 109 G N3 N N N 110 G C4 C Y N 111 G HOP3 H N N 112 G HOP2 H N N 113 G "H5'" H N N 114 G "H5''" H N N 115 G "H4'" H N N 116 G "H3'" H N N 117 G "HO3'" H N N 118 G "H2'" H N N 119 G "HO2'" H N N 120 G "H1'" H N N 121 G H8 H N N 122 G H1 H N N 123 G H21 H N N 124 G H22 H N N 125 U OP3 O N N 126 U P P N N 127 U OP1 O N N 128 U OP2 O N N 129 U "O5'" O N N 130 U "C5'" C N N 131 U "C4'" C N R 132 U "O4'" O N N 133 U "C3'" C N S 134 U "O3'" O N N 135 U "C2'" C N R 136 U "O2'" O N N 137 U "C1'" C N R 138 U N1 N N N 139 U C2 C N N 140 U O2 O N N 141 U N3 N N N 142 U C4 C N N 143 U O4 O N N 144 U C5 C N N 145 U C6 C N N 146 U HOP3 H N N 147 U HOP2 H N N 148 U "H5'" H N N 149 U "H5''" H N N 150 U "H4'" H N N 151 U "H3'" H N N 152 U "HO3'" H N N 153 U "H2'" H N N 154 U "HO2'" H N N 155 U "H1'" H N N 156 U H3 H N N 157 U H5 H N N 158 U H6 H N N 159 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ADE N9 C8 sing Y N 40 ADE N9 C4 sing Y N 41 ADE N9 HN9 sing N N 42 ADE C8 N7 doub Y N 43 ADE C8 H8 sing N N 44 ADE N7 C5 sing Y N 45 ADE C5 C6 sing Y N 46 ADE C5 C4 doub Y N 47 ADE C6 N6 sing N N 48 ADE C6 N1 doub Y N 49 ADE N6 HN61 sing N N 50 ADE N6 HN62 sing N N 51 ADE N1 C2 sing Y N 52 ADE C2 N3 doub Y N 53 ADE C2 H2 sing N N 54 ADE N3 C4 sing Y N 55 C OP3 P sing N N 56 C OP3 HOP3 sing N N 57 C P OP1 doub N N 58 C P OP2 sing N N 59 C P "O5'" sing N N 60 C OP2 HOP2 sing N N 61 C "O5'" "C5'" sing N N 62 C "C5'" "C4'" sing N N 63 C "C5'" "H5'" sing N N 64 C "C5'" "H5''" sing N N 65 C "C4'" "O4'" sing N N 66 C "C4'" "C3'" sing N N 67 C "C4'" "H4'" sing N N 68 C "O4'" "C1'" sing N N 69 C "C3'" "O3'" sing N N 70 C "C3'" "C2'" sing N N 71 C "C3'" "H3'" sing N N 72 C "O3'" "HO3'" sing N N 73 C "C2'" "O2'" sing N N 74 C "C2'" "C1'" sing N N 75 C "C2'" "H2'" sing N N 76 C "O2'" "HO2'" sing N N 77 C "C1'" N1 sing N N 78 C "C1'" "H1'" sing N N 79 C N1 C2 sing N N 80 C N1 C6 sing N N 81 C C2 O2 doub N N 82 C C2 N3 sing N N 83 C N3 C4 doub N N 84 C C4 N4 sing N N 85 C C4 C5 sing N N 86 C N4 H41 sing N N 87 C N4 H42 sing N N 88 C C5 C6 doub N N 89 C C5 H5 sing N N 90 C C6 H6 sing N N 91 G OP3 P sing N N 92 G OP3 HOP3 sing N N 93 G P OP1 doub N N 94 G P OP2 sing N N 95 G P "O5'" sing N N 96 G OP2 HOP2 sing N N 97 G "O5'" "C5'" sing N N 98 G "C5'" "C4'" sing N N 99 G "C5'" "H5'" sing N N 100 G "C5'" "H5''" sing N N 101 G "C4'" "O4'" sing N N 102 G "C4'" "C3'" sing N N 103 G "C4'" "H4'" sing N N 104 G "O4'" "C1'" sing N N 105 G "C3'" "O3'" sing N N 106 G "C3'" "C2'" sing N N 107 G "C3'" "H3'" sing N N 108 G "O3'" "HO3'" sing N N 109 G "C2'" "O2'" sing N N 110 G "C2'" "C1'" sing N N 111 G "C2'" "H2'" sing N N 112 G "O2'" "HO2'" sing N N 113 G "C1'" N9 sing N N 114 G "C1'" "H1'" sing N N 115 G N9 C8 sing Y N 116 G N9 C4 sing Y N 117 G C8 N7 doub Y N 118 G C8 H8 sing N N 119 G N7 C5 sing Y N 120 G C5 C6 sing N N 121 G C5 C4 doub Y N 122 G C6 O6 doub N N 123 G C6 N1 sing N N 124 G N1 C2 sing N N 125 G N1 H1 sing N N 126 G C2 N2 sing N N 127 G C2 N3 doub N N 128 G N2 H21 sing N N 129 G N2 H22 sing N N 130 G N3 C4 sing N N 131 U OP3 P sing N N 132 U OP3 HOP3 sing N N 133 U P OP1 doub N N 134 U P OP2 sing N N 135 U P "O5'" sing N N 136 U OP2 HOP2 sing N N 137 U "O5'" "C5'" sing N N 138 U "C5'" "C4'" sing N N 139 U "C5'" "H5'" sing N N 140 U "C5'" "H5''" sing N N 141 U "C4'" "O4'" sing N N 142 U "C4'" "C3'" sing N N 143 U "C4'" "H4'" sing N N 144 U "O4'" "C1'" sing N N 145 U "C3'" "O3'" sing N N 146 U "C3'" "C2'" sing N N 147 U "C3'" "H3'" sing N N 148 U "O3'" "HO3'" sing N N 149 U "C2'" "O2'" sing N N 150 U "C2'" "C1'" sing N N 151 U "C2'" "H2'" sing N N 152 U "O2'" "HO2'" sing N N 153 U "C1'" N1 sing N N 154 U "C1'" "H1'" sing N N 155 U N1 C2 sing N N 156 U N1 C6 sing N N 157 U C2 O2 doub N N 158 U C2 N3 sing N N 159 U N3 C4 sing N N 160 U N3 H3 sing N N 161 U C4 O4 doub N N 162 U C4 C5 sing N N 163 U C5 C6 doub N N 164 U C5 H5 sing N N 165 U C6 H6 sing N N 166 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5SWE 'double helix' 5SWE 'a-form double helix' 5SWE 'mismatched base pair' 5SWE 'internal loop' 5SWE 'triple helix' 5SWE 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 71 1_555 0.475 0.420 -0.424 -1.574 -23.953 -12.542 1 X_G13:C83_X X 13 ? X 83 ? ? ? 1 A G 2 1_555 A C 70 1_555 -0.540 -0.308 0.357 0.222 -5.880 -5.321 2 X_G14:C82_X X 14 ? X 82 ? 19 1 1 A G 3 1_555 A C 69 1_555 -0.462 -0.193 -0.441 -10.451 -15.813 3.610 3 X_G15:C81_X X 15 ? X 81 ? 19 1 1 A A 4 1_555 A U 68 1_555 -0.201 -0.072 -0.139 -8.370 -3.660 0.072 4 X_A16:U80_X X 16 ? X 80 ? 20 1 1 A A 5 1_555 A U 67 1_555 -0.328 -0.028 -0.596 -10.664 -12.801 -0.177 5 X_A17:U79_X X 17 ? X 79 ? 20 1 1 A G 6 1_555 A C 66 1_555 -0.220 0.303 0.039 -4.244 -13.695 12.309 6 X_G18:C78_X X 18 ? X 78 ? ? 1 1 A A 7 1_555 A U 65 1_555 0.046 -0.092 0.351 -6.013 -9.313 8.974 7 X_A19:U77_X X 19 ? X 77 ? 20 1 1 A U 8 1_555 A A 64 1_555 0.502 -0.238 0.703 -13.183 -10.304 8.817 8 X_U20:A76_X X 20 ? X 76 ? 20 1 1 A A 9 1_555 A U 63 1_555 0.276 0.036 0.392 8.351 -8.078 1.164 9 X_A21:U75_X X 21 ? X 75 ? 20 1 1 A U 39 1_555 A U 35 1_555 -3.717 -0.535 1.723 -24.867 56.868 -71.174 10 X_U51:U47_X X 51 ? X 47 ? ? ? 1 A A 40 1_555 A U 10 1_555 0.172 0.124 -0.950 -15.355 -2.449 3.228 11 X_A52:U22_X X 52 ? X 22 ? 20 1 1 A C 41 1_555 A G 34 1_555 0.457 -0.139 -0.821 17.008 -1.173 -0.707 12 X_C53:G46_X X 53 ? X 46 ? 19 1 1 A U 13 1_555 A A 33 1_555 -0.648 -0.166 0.305 1.072 6.530 -3.542 13 X_U25:A45_X X 25 ? X 45 ? 20 1 1 A C 14 1_555 A G 32 1_555 0.296 0.009 0.014 8.152 -3.183 4.646 14 X_C26:G44_X X 26 ? X 44 ? 19 1 1 A C 15 1_555 A G 31 1_555 0.639 -0.072 -0.392 10.842 -1.288 3.840 15 X_C27:G43_X X 27 ? X 43 ? 19 1 1 A U 16 1_555 A G 30 1_555 2.271 -0.809 0.060 -3.601 2.941 -0.865 16 X_U28:G42_X X 28 ? X 42 ? 28 1 1 A A 17 1_555 A U 29 1_555 -0.358 -0.165 -0.137 0.599 -3.806 3.588 17 X_A29:U41_X X 29 ? X 41 ? 20 1 1 A A 18 1_555 A U 28 1_555 -0.180 -0.323 -0.954 -1.993 -21.254 3.004 18 X_A30:U40_X X 30 ? X 40 ? 20 1 1 A U 19 1_555 A U 27 1_555 2.313 -2.029 0.046 -13.539 -22.652 12.704 19 X_U31:U39_X X 31 ? X 39 ? 16 1 1 A A 23 1_555 A A 52 1_555 4.203 -6.146 0.928 -9.513 -5.793 149.335 20 X_A35:A64_X X 35 ? X 64 ? ? ? 1 A G 25 1_555 A C 49 1_555 -0.208 0.080 0.726 4.321 -16.411 -4.772 21 X_G37:C61_X X 37 ? X 61 ? 19 1 1 A A 53 1_555 A U 22 1_555 -4.297 -1.290 -0.675 4.857 2.262 -107.768 22 X_A65:U34_X X 65 ? X 34 ? ? ? 1 A G 26 1_555 A C 48 1_555 0.228 0.093 0.192 18.651 -19.590 0.564 23 X_G38:C60_X X 38 ? X 60 ? 19 1 1 A C 55 1_555 A G 47 1_555 0.017 -0.315 0.495 9.760 -21.907 2.182 24 X_C67:G59_X X 67 ? X 59 ? 19 1 1 A U 56 1_555 A A 46 1_555 -0.283 -0.498 0.607 -2.360 -13.358 1.140 25 X_U68:A58_X X 68 ? X 58 ? 20 1 1 A C 57 1_555 A G 45 1_555 -0.073 -0.232 0.054 13.885 -17.722 -1.242 26 X_C69:G57_X X 69 ? X 57 ? 19 1 1 A U 58 1_555 A A 44 1_555 -0.390 -0.425 -0.359 -2.114 -11.920 -2.802 27 X_U70:A56_X X 70 ? X 56 ? 20 1 1 A U 59 1_555 A A 43 1_555 -0.475 -0.310 -0.043 4.641 -7.314 -5.043 28 X_U71:A55_X X 71 ? X 55 ? 20 1 1 A G 60 1_555 A C 42 1_555 -0.228 -0.129 -0.280 9.436 -3.833 -8.460 29 X_G72:C54_X X 72 ? X 54 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 71 1_555 A G 2 1_555 A C 70 1_555 0.402 -1.427 3.012 -8.323 7.798 34.209 -3.265 -1.670 2.476 12.822 13.685 36.006 1 XX_G13G14:C82C83_XX X 13 ? X 83 ? X 14 ? X 82 ? 1 A G 2 1_555 A C 70 1_555 A G 3 1_555 A C 69 1_555 0.651 -1.444 3.492 6.842 11.936 35.517 -3.768 -0.111 2.946 18.722 -10.733 38.009 2 XX_G14G15:C81C82_XX X 14 ? X 82 ? X 15 ? X 81 ? 1 A G 3 1_555 A C 69 1_555 A A 4 1_555 A U 68 1_555 0.324 -1.341 3.017 -1.107 10.518 32.680 -3.692 -0.698 2.468 18.110 1.907 34.304 3 XX_G15A16:U80C81_XX X 15 ? X 81 ? X 16 ? X 80 ? 1 A A 4 1_555 A U 68 1_555 A A 5 1_555 A U 67 1_555 0.068 -1.272 3.369 5.561 7.363 29.261 -3.838 0.953 2.933 14.139 -10.679 30.651 4 XX_A16A17:U79U80_XX X 16 ? X 80 ? X 17 ? X 79 ? 1 A A 5 1_555 A U 67 1_555 A G 6 1_555 A C 66 1_555 1.060 -1.357 3.066 -3.231 12.619 30.115 -4.241 -2.349 2.212 22.983 5.885 32.752 5 XX_A17G18:C78U79_XX X 17 ? X 79 ? X 18 ? X 78 ? 1 A G 6 1_555 A C 66 1_555 A A 7 1_555 A U 65 1_555 -0.511 -1.261 3.112 -4.277 8.549 29.267 -3.900 0.201 2.691 16.378 8.193 30.756 6 XX_G18A19:U77C78_XX X 18 ? X 78 ? X 19 ? X 77 ? 1 A A 7 1_555 A U 65 1_555 A U 8 1_555 A A 64 1_555 -0.033 -1.185 3.364 -0.741 12.065 34.859 -3.469 -0.046 2.814 19.430 1.194 36.834 7 XX_A19U20:A76U77_XX X 19 ? X 77 ? X 20 ? X 76 ? 1 A U 8 1_555 A A 64 1_555 A A 9 1_555 A U 63 1_555 0.035 -1.536 2.327 5.737 11.946 30.372 -3.967 0.549 1.606 21.559 -10.353 33.075 8 XX_U20A21:U75A76_XX X 20 ? X 76 ? X 21 ? X 75 ? 1 A A 9 1_555 A U 63 1_555 A U 39 1_555 A U 35 1_555 -1.964 6.652 1.972 21.772 3.102 152.504 3.414 1.056 1.923 1.595 -11.199 153.019 9 XX_A21U51:U47U75_XX X 21 ? X 75 ? X 51 ? X 47 ? 1 A U 39 1_555 A U 35 1_555 A A 40 1_555 A U 10 1_555 0.079 -0.900 3.856 2.779 25.441 8.107 -8.489 0.545 0.331 72.283 -7.896 26.826 10 XX_U51A52:U22U47_XX X 51 ? X 47 ? X 52 ? X 22 ? 1 A A 40 1_555 A U 10 1_555 A C 41 1_555 A G 34 1_555 2.075 0.109 2.424 1.967 10.229 43.201 -0.577 -2.609 2.474 13.657 -2.626 44.380 11 XX_A52C53:G46U22_XX X 52 ? X 22 ? X 53 ? X 46 ? 1 A C 41 1_555 A G 34 1_555 A U 13 1_555 A A 33 1_555 -2.677 -0.488 3.631 -18.235 6.385 49.233 -1.069 1.536 4.222 7.346 20.978 52.668 12 XX_C53U25:A45G46_XX X 53 ? X 46 ? X 25 ? X 45 ? 1 A U 13 1_555 A A 33 1_555 A C 14 1_555 A G 32 1_555 0.566 -1.772 2.959 1.838 -2.633 35.117 -2.563 -0.682 3.104 -4.352 -3.038 35.259 13 XX_U25C26:G44A45_XX X 25 ? X 45 ? X 26 ? X 44 ? 1 A C 14 1_555 A G 32 1_555 A C 15 1_555 A G 31 1_555 -0.187 -1.975 3.142 2.079 1.385 29.424 -4.152 0.784 3.028 2.720 -4.084 29.527 14 XX_C26C27:G43G44_XX X 26 ? X 44 ? X 27 ? X 43 ? 1 A C 15 1_555 A G 31 1_555 A U 16 1_555 A G 30 1_555 -0.546 -1.668 3.709 -0.195 10.220 35.445 -4.117 0.836 3.127 16.370 0.313 36.844 15 XX_C27U28:G42G43_XX X 27 ? X 43 ? X 28 ? X 42 ? 1 A U 16 1_555 A G 30 1_555 A A 17 1_555 A U 29 1_555 0.330 -1.304 3.153 4.265 0.981 25.038 -3.236 0.435 3.112 2.240 -9.742 25.411 16 XX_U28A29:U41G42_XX X 28 ? X 42 ? X 29 ? X 41 ? 1 A A 17 1_555 A U 29 1_555 A A 18 1_555 A U 28 1_555 0.133 -1.872 3.505 1.933 16.522 21.611 -7.658 0.148 1.679 37.690 -4.409 27.212 17 XX_A29A30:U40U41_XX X 29 ? X 41 ? X 30 ? X 40 ? 1 A A 18 1_555 A U 28 1_555 A U 19 1_555 A U 27 1_555 0.282 -0.927 3.607 -7.585 8.826 45.669 -1.940 -1.022 3.299 11.159 9.590 47.052 18 XX_A30U31:U39U40_XX X 30 ? X 40 ? X 31 ? X 39 ? 1 A A 23 1_555 A A 52 1_555 A G 25 1_555 A C 49 1_555 -1.154 -3.785 3.076 124.587 -122.683 -60.862 2.507 0.046 -0.021 62.232 63.198 -175.561 19 XX_A35G37:C61A64_XX X 35 ? X 64 ? X 37 ? X 61 ? 1 A G 25 1_555 A C 49 1_555 A A 53 1_555 A U 22 1_555 -5.607 4.486 -0.857 0.611 25.485 119.302 2.620 3.221 -0.293 14.684 -0.352 120.948 20 XX_G37A65:U34C61_XX X 37 ? X 61 ? X 65 ? X 34 ? 1 A G 26 1_555 A C 48 1_555 A C 55 1_555 A G 47 1_555 -1.724 -0.388 3.343 -9.270 2.642 51.590 -0.624 1.303 3.560 3.006 10.546 52.422 21 XX_G38C67:G59C60_XX X 38 ? X 60 ? X 67 ? X 59 ? 1 A C 55 1_555 A G 47 1_555 A U 56 1_555 A A 46 1_555 -0.088 -1.854 3.449 0.357 1.006 33.342 -3.404 0.215 3.392 1.753 -0.623 33.359 22 XX_C67U68:A58G59_XX X 67 ? X 59 ? X 68 ? X 58 ? 1 A U 56 1_555 A A 46 1_555 A C 57 1_555 A G 45 1_555 -0.072 -1.568 2.680 2.808 1.558 31.367 -3.120 0.554 2.584 2.873 -5.177 31.527 23 XX_U68C69:G57A58_XX X 68 ? X 58 ? X 69 ? X 57 ? 1 A C 57 1_555 A G 45 1_555 A U 58 1_555 A A 44 1_555 -0.371 -1.433 3.772 -2.120 7.809 32.024 -3.990 0.255 3.356 13.880 3.768 33.005 24 XX_C69U70:A56G57_XX X 69 ? X 57 ? X 70 ? X 56 ? 1 A U 58 1_555 A A 44 1_555 A U 59 1_555 A A 43 1_555 -0.086 -0.879 3.056 -3.458 3.720 34.457 -1.990 -0.342 2.943 6.237 5.798 34.818 25 XX_U70U71:A55A56_XX X 70 ? X 56 ? X 71 ? X 55 ? 1 A U 59 1_555 A A 43 1_555 A G 60 1_555 A C 42 1_555 -0.026 -1.554 3.285 3.446 4.351 31.929 -3.531 0.638 3.033 7.835 -6.206 32.395 26 XX_U71G72:C54A55_XX X 71 ? X 55 ? X 72 ? X 54 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ADENINE _pdbx_entity_nonpoly.comp_id ADE # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4TZX _pdbx_initial_refinement_model.details ? #