HEADER IMMUNE SYSTEM 08-AUG-16 5SWS TITLE CRYSTAL STRUCTURE OF NP2-B17 TCR-H2DB-NP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-2D(B); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: INFLUENZA NP366 EPITOPE; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: NP1-B17 TCR ALPHA CHAIN; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 5; COMPND 19 MOLECULE: NP1-B17 TCR BETA CHAIN; COMPND 20 CHAIN: E; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: B2M; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET30; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: UNIDENTIFIED INFLUENZA VIRUS; SOURCE 24 ORGANISM_TAXID: 11309; SOURCE 25 OTHER_DETAILS: SYNTHESIZED; SOURCE 26 MOL_ID: 4; SOURCE 27 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 28 ORGANISM_TAXID: 10090; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 31 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 32 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 33 EXPRESSION_SYSTEM_PLASMID: PET30; SOURCE 34 MOL_ID: 5; SOURCE 35 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 36 ORGANISM_TAXID: 10090; SOURCE 37 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 38 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 39 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 40 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 41 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS H2DB, INFLUENZA, NP366, REVERSED DOCKING, NAIVE T CELL, NP1-B17 TCR, KEYWDS 2 TCR, T CELL, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.GRAS,C.M.DEL CAMPO,C.FARENC,T.M.JOSEPHS,J.ROSSJOHN REVDAT 4 04-OCT-23 5SWS 1 REMARK REVDAT 3 22-NOV-17 5SWS 1 JRNL REMARK REVDAT 2 26-OCT-16 5SWS 1 JRNL REVDAT 1 05-OCT-16 5SWS 0 JRNL AUTH S.GRAS,J.CHADDERTON,C.M.DEL CAMPO,C.FARENC,F.WIEDE, JRNL AUTH 2 T.M.JOSEPHS,X.Y.SNG,M.MIRAMS,K.A.WATSON,T.TIGANIS,K.M.QUINN, JRNL AUTH 3 J.ROSSJOHN,N.L.LA GRUTA JRNL TITL REVERSED T CELL RECEPTOR DOCKING ON A MAJOR JRNL TITL 2 HISTOCOMPATIBILITY CLASS I COMPLEX LIMITS INVOLVEMENT IN THE JRNL TITL 3 IMMUNE RESPONSE. JRNL REF IMMUNITY V. 45 749 2016 JRNL REFN ISSN 1074-7613 JRNL PMID 27717799 JRNL DOI 10.1016/J.IMMUNI.2016.09.007 REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 21281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1102 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.06 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2813 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2678 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2681 REMARK 3 BIN R VALUE (WORKING SET) : 0.2643 REMARK 3 BIN FREE R VALUE : 0.3416 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.69 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6591 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05620 REMARK 3 B22 (A**2) : 11.50340 REMARK 3 B33 (A**2) : -11.44720 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -7.27300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.474 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.428 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.869 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.820 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6808 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9248 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2319 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 187 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 973 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6808 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 851 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6975 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.88 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.61 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 107.9969 32.9699 -17.5433 REMARK 3 T TENSOR REMARK 3 T11: -0.0961 T22: -0.0376 REMARK 3 T33: 0.0445 T12: 0.0691 REMARK 3 T13: 0.0712 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.3987 L22: 2.5120 REMARK 3 L33: 0.3762 L12: -0.0017 REMARK 3 L13: 0.2536 L23: -0.8067 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: 0.0143 S13: -0.0123 REMARK 3 S21: 0.0129 S22: -0.0016 S23: -0.0855 REMARK 3 S31: 0.0098 S32: 0.0077 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 93.4038 21.1548 -9.7616 REMARK 3 T TENSOR REMARK 3 T11: -0.0279 T22: 0.0153 REMARK 3 T33: 0.0423 T12: -0.0093 REMARK 3 T13: 0.0320 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 1.3244 L22: 0.7672 REMARK 3 L33: 0.2895 L12: 0.6249 REMARK 3 L13: -0.7328 L23: -0.4019 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: -0.0065 S13: -0.0166 REMARK 3 S21: 0.0125 S22: 0.0076 S23: 0.0232 REMARK 3 S31: 0.0178 S32: -0.0472 S33: -0.0143 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 77.5153 88.9953 -23.6397 REMARK 3 T TENSOR REMARK 3 T11: -0.0590 T22: 0.0007 REMARK 3 T33: 0.0443 T12: 0.0784 REMARK 3 T13: -0.0072 T23: -0.0932 REMARK 3 L TENSOR REMARK 3 L11: 0.7375 L22: 1.5650 REMARK 3 L33: -0.1755 L12: 0.3456 REMARK 3 L13: -0.2097 L23: -0.1579 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: 0.0238 S13: -0.0193 REMARK 3 S21: 0.0042 S22: 0.0092 S23: 0.0001 REMARK 3 S31: -0.0956 S32: 0.0018 S33: -0.0327 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { E|* } REMARK 3 ORIGIN FOR THE GROUP (A): 97.1034 88.6546 -26.0407 REMARK 3 T TENSOR REMARK 3 T11: -0.0005 T22: -0.0564 REMARK 3 T33: -0.0057 T12: 0.0086 REMARK 3 T13: 0.0010 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.4888 L22: 3.2796 REMARK 3 L33: 0.0113 L12: -0.3775 REMARK 3 L13: -0.1174 L23: -0.2470 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: 0.0071 S13: -0.0081 REMARK 3 S21: -0.0083 S22: -0.0222 S23: -0.0264 REMARK 3 S31: -0.0310 S32: 0.0254 S33: -0.0041 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21354 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.860 REMARK 200 RESOLUTION RANGE LOW (A) : 49.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : 0.12400 REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.57900 REMARK 200 R SYM FOR SHELL (I) : 0.02900 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4HUU, 1KGC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% 3350, 0.2 KNATARTRATE, 0.1 BTP REMARK 280 7.5, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 63.47100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 223 REMARK 465 GLY A 252 REMARK 465 LYS A 253 REMARK 465 GLU A 254 REMARK 465 PRO A 278 REMARK 465 SER A 279 REMARK 465 THR A 280 REMARK 465 ILE B 1 REMARK 465 GLN B 2 REMARK 465 ASP D 183 REMARK 465 PHE D 184 REMARK 465 PHE D 215 REMARK 465 PRO D 216 REMARK 465 SER D 217 REMARK 465 PRO D 218 REMARK 465 GLU D 219 REMARK 465 SER D 220 REMARK 465 SER D 221 REMARK 465 ASP E 1 REMARK 465 THR E 2 REMARK 465 ASP E 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 -4.08 69.82 REMARK 500 PHE A 33 -36.43 -130.85 REMARK 500 ARG A 108 -24.01 -142.33 REMARK 500 LEU A 109 125.72 95.85 REMARK 500 LEU A 114 95.56 -162.87 REMARK 500 TYR A 123 -74.23 -123.77 REMARK 500 LYS A 131 -25.17 -140.64 REMARK 500 LEU A 219 67.74 -115.53 REMARK 500 ASN A 220 -48.35 71.36 REMARK 500 THR A 225 -77.91 -130.42 REMARK 500 GLU A 275 -117.55 -75.85 REMARK 500 TRP B 60 -7.27 68.83 REMARK 500 MET C 6 -120.86 -81.60 REMARK 500 LEU D 53 -62.41 -93.37 REMARK 500 SER D 99 93.26 -59.76 REMARK 500 LYS D 143 -91.63 -129.94 REMARK 500 SER D 145 -70.70 -106.16 REMARK 500 LYS D 165 74.12 -7.42 REMARK 500 ASP D 166 128.98 -170.17 REMARK 500 ARG D 180 -55.40 67.85 REMARK 500 ASN D 202 96.37 -68.40 REMARK 500 ALA D 203 20.48 -159.44 REMARK 500 PHE D 204 12.25 -69.85 REMARK 500 PRO D 210 88.21 -67.47 REMARK 500 GLU D 211 144.47 167.82 REMARK 500 THR D 213 -112.92 -123.18 REMARK 500 LEU E 53 -60.26 -93.21 REMARK 500 ASP E 58 -81.80 57.06 REMARK 500 GLU E 73 -24.79 92.58 REMARK 500 SER E 99 96.74 -64.82 REMARK 500 GLN E 150 35.20 -97.28 REMARK 500 PRO E 163 -156.79 -87.10 REMARK 500 ASP E 164 11.05 -69.42 REMARK 500 SER E 229 -164.63 -122.30 REMARK 500 THR E 243 96.58 -63.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SWZ RELATED DB: PDB DBREF 5SWS A 1 280 UNP P01899 HA11_MOUSE 25 304 DBREF 5SWS B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 5SWS C 1 9 PDB 5SWS 5SWS 1 9 DBREF 5SWS D 1 221 PDB 5SWS 5SWS 1 221 DBREF 5SWS E 1 255 PDB 5SWS 5SWS 1 255 SEQRES 1 A 280 GLY PRO HIS SER MET ARG TYR PHE GLU THR ALA VAL SER SEQRES 2 A 280 ARG PRO GLY LEU GLU GLU PRO ARG TYR ILE SER VAL GLY SEQRES 3 A 280 TYR VAL ASP ASN LYS GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 280 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA PRO TRP MET SEQRES 5 A 280 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 A 280 LYS ALA LYS GLY GLN GLU GLN TRP PHE ARG VAL SER LEU SEQRES 7 A 280 ARG ASN LEU LEU GLY TYR TYR ASN GLN SER ALA GLY GLY SEQRES 8 A 280 SER HIS THR LEU GLN GLN MET SER GLY CYS ASP LEU GLY SEQRES 9 A 280 SER ASP TRP ARG LEU LEU ARG GLY TYR LEU GLN PHE ALA SEQRES 10 A 280 TYR GLU GLY ARG ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 280 LYS THR TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 A 280 ARG ARG LYS TRP GLU GLN SER GLY ALA ALA GLU HIS TYR SEQRES 13 A 280 LYS ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU HIS SEQRES 14 A 280 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 A 280 ASP SER PRO LYS ALA HIS VAL THR HIS HIS PRO ARG SER SEQRES 16 A 280 LYS GLY GLU VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 280 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 A 280 GLU GLU LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 280 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 A 280 VAL VAL PRO LEU GLY LYS GLU GLN ASN TYR THR CYS ARG SEQRES 21 A 280 VAL TYR HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 A 280 TRP GLU PRO PRO PRO SER THR SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ALA SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 9 ALA SER ASN GLU ASN MET GLU THR MET SEQRES 1 D 207 GLN GLN GLN VAL ARG GLN SER PRO GLN SER LEU THR VAL SEQRES 2 D 207 TRP GLU GLY GLU THR ALA ILE LEU ASN CYS SER TYR GLU SEQRES 3 D 207 ASP SER THR PHE ASN TYR PHE PRO TRP TYR GLN GLN PHE SEQRES 4 D 207 PRO GLY GLU GLY PRO ALA LEU LEU ILE SER ILE ARG SER SEQRES 5 D 207 VAL SER ASP LYS LYS GLU ASP GLY ARG PHE THR ILE PHE SEQRES 6 D 207 PHE ASN LYS ARG GLU LYS LYS LEU SER LEU HIS ILE THR SEQRES 7 D 207 ASP SER GLN PRO GLY ASP SER ALA THR TYR PHE CYS ALA SEQRES 8 D 207 ALA SER GLU GLY SER GLY SER TRP GLN LEU ILE PHE GLY SEQRES 9 D 207 SER GLY THR GLN LEU THR VAL MET PRO ASN ILE GLN ASN SEQRES 10 D 207 PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SEQRES 11 D 207 SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER SEQRES 12 D 207 GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR SEQRES 13 D 207 ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP SEQRES 14 D 207 PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER SEQRES 15 D 207 ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE SEQRES 16 D 207 PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 E 242 ASP THR THR VAL LYS GLN ASN PRO ARG TYR LYS LEU ALA SEQRES 2 E 242 ARG VAL GLY LYS PRO VAL ASN LEU ILE CYS SER GLN THR SEQRES 3 E 242 MET ASN HIS ASP THR MET TYR TRP TYR GLN LYS LYS PRO SEQRES 4 E 242 ASN GLN ALA PRO LYS LEU LEU LEU PHE TYR TYR ASP LYS SEQRES 5 E 242 ILE LEU ASN ARG GLU ALA ASP THR PHE GLU LYS PHE GLN SEQRES 6 E 242 SER SER ARG PRO ASN ASN SER PHE CYS SER LEU TYR ILE SEQRES 7 E 242 GLY SER ALA GLY LEU GLU TYR SER ALA MET TYR LEU CYS SEQRES 8 E 242 ALA SER SER ALA GLY LEU ASP ALA GLU GLN TYR PHE GLY SEQRES 9 E 242 PRO GLY THR ARG LEU LEU VAL LEU GLU ASP LEU LYS ASN SEQRES 10 E 242 VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU SEQRES 11 E 242 ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS SEQRES 12 E 242 LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER SEQRES 13 E 242 TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS SEQRES 14 E 242 THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN SEQRES 15 E 242 ASP SER ARG TYR ALA LEU SER SER ARG LEU ARG VAL SER SEQRES 16 E 242 ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS SEQRES 17 E 242 GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP SEQRES 18 E 242 THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER SEQRES 19 E 242 ALA GLU ALA TRP GLY ARG ALA ASP FORMUL 6 HOH *139(H2 O) HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 GLY A 56 ASN A 86 1 31 HELIX 3 AA3 ASP A 137 GLY A 151 1 15 HELIX 4 AA4 GLY A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLN D 95 SER D 99 5 5 HELIX 7 AA7 GLY E 95 SER E 99 5 5 HELIX 8 AA8 SER E 142 THR E 149 1 8 HELIX 9 AA9 ALA E 209 ASN E 214 1 6 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 LYS A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O LYS A 31 SHEET 4 AA1 8 SER A 4 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 AA1 8 THR A 94 ASP A 102 -1 O GLN A 97 N GLU A 9 SHEET 6 AA1 8 ARG A 111 TYR A 118 -1 O GLN A 115 N MET A 98 SHEET 7 AA1 8 ARG A 121 LEU A 126 -1 O LEU A 126 N LEU A 114 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O VAL A 249 N VAL A 199 SHEET 4 AA2 4 MET A 228 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O VAL A 249 N VAL A 199 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 3 THR A 214 GLN A 218 0 SHEET 2 AA4 3 THR A 258 TYR A 262 -1 O ARG A 260 N THR A 216 SHEET 3 AA4 3 LEU A 270 LEU A 272 -1 O LEU A 270 N VAL A 261 SHEET 1 AA5 4 GLN B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA5 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 AA6 4 GLN B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 LYS B 44 LYS B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 AA7 4 TYR B 78 LYS B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 TYR B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 5 ARG D 5 SER D 7 0 SHEET 2 AA8 5 ALA D 19 SER D 24 -1 O SER D 24 N ARG D 5 SHEET 3 AA8 5 LYS D 86 ILE D 91 -1 O LEU D 89 N LEU D 21 SHEET 4 AA8 5 PHE D 76 PHE D 79 -1 N THR D 77 O HIS D 90 SHEET 5 AA8 5 LYS D 62 ASP D 68 -1 N ASP D 68 O PHE D 76 SHEET 1 AA9 5 SER D 10 TRP D 14 0 SHEET 2 AA9 5 THR D 121 MET D 126 1 O THR D 124 N LEU D 11 SHEET 3 AA9 5 THR D 101 CYS D 104 -1 N TYR D 102 O THR D 121 SHEET 4 AA9 5 PHE D 30 GLN D 44 -1 N TYR D 42 O PHE D 103 SHEET 5 AA9 5 ALA D 51 ARG D 57 -1 O ILE D 56 N PHE D 39 SHEET 1 AB1 5 SER D 10 TRP D 14 0 SHEET 2 AB1 5 THR D 121 MET D 126 1 O THR D 124 N LEU D 11 SHEET 3 AB1 5 THR D 101 CYS D 104 -1 N TYR D 102 O THR D 121 SHEET 4 AB1 5 PHE D 30 GLN D 44 -1 N TYR D 42 O PHE D 103 SHEET 5 AB1 5 SER D 107 GLU D 108 -1 O SER D 107 N ASN D 31 SHEET 1 AB2 4 ALA D 135 ARG D 140 0 SHEET 2 AB2 4 SER D 148 PHE D 155 -1 O VAL D 149 N LEU D 139 SHEET 3 AB2 4 ASN D 187 SER D 193 -1 O ALA D 191 N CYS D 150 SHEET 4 AB2 4 VAL D 169 ILE D 171 -1 N TYR D 170 O TRP D 192 SHEET 1 AB3 4 ALA D 135 ARG D 140 0 SHEET 2 AB3 4 SER D 148 PHE D 155 -1 O VAL D 149 N LEU D 139 SHEET 3 AB3 4 ASN D 187 SER D 193 -1 O ALA D 191 N CYS D 150 SHEET 4 AB3 4 CYS D 175 VAL D 176 -1 N CYS D 175 O SER D 188 SHEET 1 AB4 4 VAL E 4 ASN E 7 0 SHEET 2 AB4 4 VAL E 19 GLN E 25 -1 O SER E 24 N LYS E 5 SHEET 3 AB4 4 PHE E 86 ILE E 91 -1 O ILE E 91 N VAL E 19 SHEET 4 AB4 4 GLN E 77 SER E 79 -1 N GLN E 77 O TYR E 90 SHEET 1 AB5 6 TYR E 10 ARG E 14 0 SHEET 2 AB5 6 THR E 120 LEU E 125 1 O ARG E 121 N LYS E 11 SHEET 3 AB5 6 MET E 101 SER E 107 -1 N TYR E 102 O THR E 120 SHEET 4 AB5 6 THR E 31 LYS E 44 -1 N LYS E 44 O MET E 101 SHEET 5 AB5 6 LYS E 51 TYR E 57 -1 O LYS E 51 N GLN E 43 SHEET 6 AB5 6 ILE E 60 ARG E 67 -1 O ASN E 66 N PHE E 55 SHEET 1 AB6 4 TYR E 10 ARG E 14 0 SHEET 2 AB6 4 THR E 120 LEU E 125 1 O ARG E 121 N LYS E 11 SHEET 3 AB6 4 MET E 101 SER E 107 -1 N TYR E 102 O THR E 120 SHEET 4 AB6 4 TYR E 115 PHE E 116 -1 O TYR E 115 N SER E 106 SHEET 1 AB7 4 GLU E 135 PHE E 139 0 SHEET 2 AB7 4 LYS E 151 PHE E 161 -1 O VAL E 155 N PHE E 139 SHEET 3 AB7 4 TYR E 199 SER E 208 -1 O TYR E 199 N PHE E 161 SHEET 4 AB7 4 VAL E 181 THR E 183 -1 N CYS E 182 O ARG E 204 SHEET 1 AB8 4 GLU E 135 PHE E 139 0 SHEET 2 AB8 4 LYS E 151 PHE E 161 -1 O VAL E 155 N PHE E 139 SHEET 3 AB8 4 TYR E 199 SER E 208 -1 O TYR E 199 N PHE E 161 SHEET 4 AB8 4 LEU E 188 LYS E 189 -1 N LEU E 188 O ALA E 200 SHEET 1 AB9 4 LYS E 175 VAL E 177 0 SHEET 2 AB9 4 VAL E 166 VAL E 172 -1 N VAL E 172 O LYS E 175 SHEET 3 AB9 4 HIS E 218 PHE E 225 -1 O ARG E 220 N TRP E 171 SHEET 4 AB9 4 ILE E 245 TRP E 251 -1 O ALA E 248 N CYS E 221 SSBOND 1 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 2 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 3 CYS D 150 CYS D 200 1555 1555 2.04 SSBOND 4 CYS D 175 CYS E 182 1555 1555 2.03 SSBOND 5 CYS E 23 CYS E 104 1555 1555 2.03 SSBOND 6 CYS E 156 CYS E 221 1555 1555 2.03 CISPEP 1 SER A 105 ASP A 106 0 -1.76 CISPEP 2 TYR A 209 PRO A 210 0 2.30 CISPEP 3 GLU A 275 PRO A 276 0 1.94 CISPEP 4 HIS B 31 PRO B 32 0 2.80 CISPEP 5 GLN D 2 GLN D 3 0 -2.35 CISPEP 6 GLN D 3 VAL D 4 0 -0.79 CISPEP 7 SER D 7 PRO D 8 0 -0.26 CISPEP 8 SER D 144 SER D 145 0 -4.15 CISPEP 9 SER D 145 ASP D 146 0 -9.71 CISPEP 10 GLU D 211 ASP D 212 0 -2.55 CISPEP 11 ASN E 7 PRO E 8 0 -0.06 CISPEP 12 GLY E 92 SER E 93 0 1.83 CISPEP 13 TYR E 162 PRO E 163 0 2.73 CRYST1 48.017 126.942 80.479 90.00 105.66 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020826 0.000000 0.005838 0.00000 SCALE2 0.000000 0.007878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012905 0.00000