HEADER HYDROLASE/HYDROLASE INHIBITOR 10-AUG-16 5SY2
TITLE STRUCTURE-BASED DESIGN OF A NEW SERIES OF N-PIPERIDIN-3-YLPYRIMIDINE-
TITLE 2 5-CARBOXAMIDES AS RENIN INHIBITORS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RENIN;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: ANGIOTENSINOGENASE;
COMPND 5 EC: 3.4.23.15;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: REN;
SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606;
SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293
KEYWDS PROTEIN-LIGAND COMPLEX, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR G.P.SNELL,C.A.BEHNKE,K.OKADA,O.HIDEYUKI,B.C.SANG,W.LANE
REVDAT 4 23-OCT-24 5SY2 1 HETSYN
REVDAT 3 29-JUL-20 5SY2 1 COMPND JRNL REMARK HETNAM
REVDAT 3 2 1 LINK SITE
REVDAT 2 09-NOV-16 5SY2 1 JRNL
REVDAT 1 02-NOV-16 5SY2 0
JRNL AUTH Y.IMAEDA,M.TAWADA,S.SUZUKI,M.TOMIMOTO,M.KONDO,N.TARUI,
JRNL AUTH 2 T.SANADA,R.KANAGAWA,G.SNELL,C.A.BEHNKE,K.KUBO,T.KUROITA
JRNL TITL STRUCTURE-BASED DESIGN OF A NEW SERIES OF
JRNL TITL 2 N-(PIPERIDIN-3-YL)PYRIMIDINE-5-CARBOXAMIDES AS RENIN
JRNL TITL 3 INHIBITORS.
JRNL REF BIOORG.MED.CHEM. V. 24 5771 2016
JRNL REFN ESSN 1464-3391
JRNL PMID 27687967
JRNL DOI 10.1016/J.BMC.2016.09.030
REMARK 2
REMARK 2 RESOLUTION. 2.25 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0135
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 3 NUMBER OF REFLECTIONS : 38946
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.187
REMARK 3 R VALUE (WORKING SET) : 0.185
REMARK 3 FREE R VALUE : 0.221
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 2061
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2831
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.55
REMARK 3 BIN R VALUE (WORKING SET) : 0.2370
REMARK 3 BIN FREE R VALUE SET COUNT : 155
REMARK 3 BIN FREE R VALUE : 0.2710
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5071
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 112
REMARK 3 SOLVENT ATOMS : 274
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.42
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.00000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.240
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.873
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5325 ; 0.008 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 4857 ; 0.002 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7214 ; 1.339 ; 1.967
REMARK 3 BOND ANGLES OTHERS (DEGREES): 11196 ; 0.901 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 663 ; 7.204 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;36.138 ;24.178
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 822 ;14.926 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.054 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 813 ; 0.077 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5941 ; 0.004 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 1202 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2658 ; 0.716 ; 2.358
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2657 ; 0.714 ; 2.358
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3313 ; 1.278 ; 3.528
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 10
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 2 A 78
REMARK 3 RESIDUE RANGE : A 79 A 91
REMARK 3 RESIDUE RANGE : A 92 A 154
REMARK 3 RESIDUE RANGE : A 155 A 248
REMARK 3 RESIDUE RANGE : A 249 A 265
REMARK 3 RESIDUE RANGE : A 266 A 280
REMARK 3 RESIDUE RANGE : A 281 A 298
REMARK 3 RESIDUE RANGE : A 299 A 302
REMARK 3 RESIDUE RANGE : A 303 A 312
REMARK 3 RESIDUE RANGE : A 313 A 340
REMARK 3 ORIGIN FOR THE GROUP (A): 30.2197 63.2604 44.1096
REMARK 3 T TENSOR
REMARK 3 T11: 0.0475 T22: 0.0624
REMARK 3 T33: 0.0118 T12: 0.0052
REMARK 3 T13: 0.0061 T23: 0.0100
REMARK 3 L TENSOR
REMARK 3 L11: 1.5058 L22: 2.6853
REMARK 3 L33: 0.6037 L12: 1.2765
REMARK 3 L13: 0.4173 L23: 0.4711
REMARK 3 S TENSOR
REMARK 3 S11: -0.1407 S12: 0.1347 S13: 0.0715
REMARK 3 S21: -0.1951 S22: 0.1519 S23: -0.0402
REMARK 3 S31: -0.1425 S32: 0.0564 S33: -0.0112
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 10
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 1 B 78
REMARK 3 RESIDUE RANGE : B 79 B 91
REMARK 3 RESIDUE RANGE : B 92 B 154
REMARK 3 RESIDUE RANGE : B 155 B 248
REMARK 3 RESIDUE RANGE : B 249 B 265
REMARK 3 RESIDUE RANGE : B 266 B 280
REMARK 3 RESIDUE RANGE : B 281 B 298
REMARK 3 RESIDUE RANGE : B 299 B 302
REMARK 3 RESIDUE RANGE : B 303 B 312
REMARK 3 RESIDUE RANGE : B 313 B 340
REMARK 3 ORIGIN FOR THE GROUP (A): 46.6740 86.6137 67.4582
REMARK 3 T TENSOR
REMARK 3 T11: 0.0219 T22: 0.0158
REMARK 3 T33: 0.0599 T12: -0.0113
REMARK 3 T13: 0.0212 T23: -0.0217
REMARK 3 L TENSOR
REMARK 3 L11: 1.3881 L22: 1.4165
REMARK 3 L33: 2.1328 L12: -0.4294
REMARK 3 L13: 0.1341 L23: -0.6419
REMARK 3 S TENSOR
REMARK 3 S11: -0.0511 S12: -0.0222 S13: 0.1445
REMARK 3 S21: 0.0506 S22: 0.0486 S23: -0.1036
REMARK 3 S31: -0.0735 S32: 0.1058 S33: 0.0026
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : WITH TLS ADDED
REMARK 4
REMARK 4 5SY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-16.
REMARK 100 THE DEPOSITION ID IS D_1000223317.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 31-AUG-06
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.9
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 5.0.3
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : SI(220)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41044
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250
REMARK 200 RESOLUTION RANGE LOW (A) : 50.010
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6
REMARK 200 DATA REDUNDANCY : 5.900
REMARK 200 R MERGE (I) : 0.08100
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6
REMARK 200 DATA REDUNDANCY IN SHELL : 4.80
REMARK 200 R MERGE FOR SHELL (I) : 0.50800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 57.86
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG600, 0.06M CITRATE, 0.04M
REMARK 280 CITRIC ACID, PH 7.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290 5555 Z,X,Y
REMARK 290 6555 Z+1/2,-X+1/2,-Y
REMARK 290 7555 -Z+1/2,-X,Y+1/2
REMARK 290 8555 -Z,X+1/2,-Y+1/2
REMARK 290 9555 Y,Z,X
REMARK 290 10555 -Y,Z+1/2,-X+1/2
REMARK 290 11555 Y+1/2,-Z+1/2,-X
REMARK 290 12555 -Y+1/2,-Z,X+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 68.77000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.77000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.77000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.77000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.77000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.77000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 68.77000
REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 68.77000
REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 68.77000
REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 68.77000
REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 68.77000
REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 68.77000
REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 68.77000
REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 68.77000
REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 68.77000
REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 68.77000
REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 68.77000
REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 68.77000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 19060 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 73150 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 LEU A 1
REMARK 465 GLU A 167
REMARK 465 ASN A 168
REMARK 465 SER A 212
REMARK 465 SER A 213
REMARK 465 LEU B 81
REMARK 465 ARG B 82
REMARK 465 TYR B 83
REMARK 465 SER B 84
REMARK 465 THR B 85
REMARK 465 GLY B 86
REMARK 465 THR B 87
REMARK 465 VAL B 88
REMARK 465 GLU B 167
REMARK 465 ASN B 168
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 155 CG CD OE1 OE2
REMARK 470 GLN A 170 CG CD OE1 NE2
REMARK 470 ASP A 219 CG OD1 OD2
REMARK 470 LYS A 249 CG CD CE NZ
REMARK 470 LYS A 258 CG CD CE NZ
REMARK 470 LYS A 293 CG CD CE NZ
REMARK 470 LEU B 1 CG CD1 CD2
REMARK 470 ARG B 139 CG CD NE CZ NH1 NH2
REMARK 470 ASP B 165 CG OD1 OD2
REMARK 470 GLN B 170 CG CD OE1 NE2
REMARK 470 GLU B 218 CG CD OE1 OE2
REMARK 470 LYS B 249 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 75 -64.01 -131.27
REMARK 500 ARG A 251 -161.21 -111.68
REMARK 500 ALA A 299 38.60 -87.81
REMARK 500 ASP B 17 15.39 58.42
REMARK 500 ASN B 75 -62.53 -127.85
REMARK 500 ARG B 251 -79.60 -73.84
REMARK 500 LEU B 252 -48.08 -135.91
REMARK 500 ALA B 299 35.85 -88.55
REMARK 500 PRO B 307 152.17 -47.10
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 NAG A 401
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5SXN RELATED DB: PDB
REMARK 900 RELATED ID: 5SY3 RELATED DB: PDB
REMARK 900 RELATED ID: 5SZ9 RELATED DB: PDB
DBREF 5SY2 A 1 340 UNP P00797 RENI_HUMAN 67 406
DBREF 5SY2 B 1 340 UNP P00797 RENI_HUMAN 67 406
SEQRES 1 A 340 LEU THR LEU GLY ASN THR THR SER SER VAL ILE LEU THR
SEQRES 2 A 340 ASN TYR MET ASP THR GLN TYR TYR GLY GLU ILE GLY ILE
SEQRES 3 A 340 GLY THR PRO PRO GLN THR PHE LYS VAL VAL PHE ASP THR
SEQRES 4 A 340 GLY SER SER ASN VAL TRP VAL PRO SER SER LYS CYS SER
SEQRES 5 A 340 ARG LEU TYR THR ALA CYS VAL TYR HIS LYS LEU PHE ASP
SEQRES 6 A 340 ALA SER ASP SER SER SER TYR LYS HIS ASN GLY THR GLU
SEQRES 7 A 340 LEU THR LEU ARG TYR SER THR GLY THR VAL SER GLY PHE
SEQRES 8 A 340 LEU SER GLN ASP ILE ILE THR VAL GLY GLY ILE THR VAL
SEQRES 9 A 340 THR GLN MET PHE GLY GLU VAL THR GLU MET PRO ALA LEU
SEQRES 10 A 340 PRO PHE MET LEU ALA GLU PHE ASP GLY VAL VAL GLY MET
SEQRES 11 A 340 GLY PHE ILE GLU GLN ALA ILE GLY ARG VAL THR PRO ILE
SEQRES 12 A 340 PHE ASP ASN ILE ILE SER GLN GLY VAL LEU LYS GLU ASP
SEQRES 13 A 340 VAL PHE SER PHE TYR TYR ASN ARG ASP SER GLU ASN SER
SEQRES 14 A 340 GLN SER LEU GLY GLY GLN ILE VAL LEU GLY GLY SER ASP
SEQRES 15 A 340 PRO GLN HIS TYR GLU GLY ASN PHE HIS TYR ILE ASN LEU
SEQRES 16 A 340 ILE LYS THR GLY VAL TRP GLN ILE GLN MET LYS GLY VAL
SEQRES 17 A 340 SER VAL GLY SER SER THR LEU LEU CYS GLU ASP GLY CYS
SEQRES 18 A 340 LEU ALA LEU VAL ASP THR GLY ALA SER TYR ILE SER GLY
SEQRES 19 A 340 SER THR SER SER ILE GLU LYS LEU MET GLU ALA LEU GLY
SEQRES 20 A 340 ALA LYS LYS ARG LEU PHE ASP TYR VAL VAL LYS CYS ASN
SEQRES 21 A 340 GLU GLY PRO THR LEU PRO ASP ILE SER PHE HIS LEU GLY
SEQRES 22 A 340 GLY LYS GLU TYR THR LEU THR SER ALA ASP TYR VAL PHE
SEQRES 23 A 340 GLN GLU SER TYR SER SER LYS LYS LEU CYS THR LEU ALA
SEQRES 24 A 340 ILE HIS ALA MET ASP ILE PRO PRO PRO THR GLY PRO THR
SEQRES 25 A 340 TRP ALA LEU GLY ALA THR PHE ILE ARG LYS PHE TYR THR
SEQRES 26 A 340 GLU PHE ASP ARG ARG ASN ASN ARG ILE GLY PHE ALA LEU
SEQRES 27 A 340 ALA ARG
SEQRES 1 B 340 LEU THR LEU GLY ASN THR THR SER SER VAL ILE LEU THR
SEQRES 2 B 340 ASN TYR MET ASP THR GLN TYR TYR GLY GLU ILE GLY ILE
SEQRES 3 B 340 GLY THR PRO PRO GLN THR PHE LYS VAL VAL PHE ASP THR
SEQRES 4 B 340 GLY SER SER ASN VAL TRP VAL PRO SER SER LYS CYS SER
SEQRES 5 B 340 ARG LEU TYR THR ALA CYS VAL TYR HIS LYS LEU PHE ASP
SEQRES 6 B 340 ALA SER ASP SER SER SER TYR LYS HIS ASN GLY THR GLU
SEQRES 7 B 340 LEU THR LEU ARG TYR SER THR GLY THR VAL SER GLY PHE
SEQRES 8 B 340 LEU SER GLN ASP ILE ILE THR VAL GLY GLY ILE THR VAL
SEQRES 9 B 340 THR GLN MET PHE GLY GLU VAL THR GLU MET PRO ALA LEU
SEQRES 10 B 340 PRO PHE MET LEU ALA GLU PHE ASP GLY VAL VAL GLY MET
SEQRES 11 B 340 GLY PHE ILE GLU GLN ALA ILE GLY ARG VAL THR PRO ILE
SEQRES 12 B 340 PHE ASP ASN ILE ILE SER GLN GLY VAL LEU LYS GLU ASP
SEQRES 13 B 340 VAL PHE SER PHE TYR TYR ASN ARG ASP SER GLU ASN SER
SEQRES 14 B 340 GLN SER LEU GLY GLY GLN ILE VAL LEU GLY GLY SER ASP
SEQRES 15 B 340 PRO GLN HIS TYR GLU GLY ASN PHE HIS TYR ILE ASN LEU
SEQRES 16 B 340 ILE LYS THR GLY VAL TRP GLN ILE GLN MET LYS GLY VAL
SEQRES 17 B 340 SER VAL GLY SER SER THR LEU LEU CYS GLU ASP GLY CYS
SEQRES 18 B 340 LEU ALA LEU VAL ASP THR GLY ALA SER TYR ILE SER GLY
SEQRES 19 B 340 SER THR SER SER ILE GLU LYS LEU MET GLU ALA LEU GLY
SEQRES 20 B 340 ALA LYS LYS ARG LEU PHE ASP TYR VAL VAL LYS CYS ASN
SEQRES 21 B 340 GLU GLY PRO THR LEU PRO ASP ILE SER PHE HIS LEU GLY
SEQRES 22 B 340 GLY LYS GLU TYR THR LEU THR SER ALA ASP TYR VAL PHE
SEQRES 23 B 340 GLN GLU SER TYR SER SER LYS LYS LEU CYS THR LEU ALA
SEQRES 24 B 340 ILE HIS ALA MET ASP ILE PRO PRO PRO THR GLY PRO THR
SEQRES 25 B 340 TRP ALA LEU GLY ALA THR PHE ILE ARG LYS PHE TYR THR
SEQRES 26 B 340 GLU PHE ASP ARG ARG ASN ASN ARG ILE GLY PHE ALA LEU
SEQRES 27 B 340 ALA ARG
HET NAG A 401 14
HET 74V A 402 25
HET PGE A 403 10
HET DMS A 404 4
HET DMS A 405 4
HET NAG B 401 14
HET 74V B 402 25
HET 1PE B 403 16
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM 74V N-ETHYL-4-{[(FURAN-2-YL)METHYL]AMINO}-2-METHYL-N-[(3S)-
HETNAM 2 74V PIPERIDIN-3-YL]PYRIMIDINE-5-CARBOXAMIDE
HETNAM PGE TRIETHYLENE GLYCOL
HETNAM DMS DIMETHYL SULFOXIDE
HETNAM 1PE PENTAETHYLENE GLYCOL
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
HETSYN 1PE PEG400
FORMUL 3 NAG 2(C8 H15 N O6)
FORMUL 4 74V 2(C18 H25 N5 O2)
FORMUL 5 PGE C6 H14 O4
FORMUL 6 DMS 2(C2 H6 O S)
FORMUL 10 1PE C10 H22 O6
FORMUL 11 HOH *274(H2 O)
HELIX 1 AA1 TYR A 55 TYR A 60 1 6
HELIX 2 AA2 ASP A 65 SER A 69 5 5
HELIX 3 AA3 PRO A 115 MET A 120 1 6
HELIX 4 AA4 PHE A 132 VAL A 140 5 9
HELIX 5 AA5 PRO A 142 GLN A 150 1 9
HELIX 6 AA6 ASP A 182 GLN A 184 5 3
HELIX 7 AA7 SER A 235 GLY A 247 1 13
HELIX 8 AA8 ASN A 260 LEU A 265 5 6
HELIX 9 AA9 THR A 280 VAL A 285 1 6
HELIX 10 AB1 GLY A 316 LYS A 322 1 7
HELIX 11 AB2 TYR B 55 HIS B 61 1 7
HELIX 12 AB3 ASP B 65 SER B 69 5 5
HELIX 13 AB4 PRO B 115 MET B 120 1 6
HELIX 14 AB5 PHE B 132 VAL B 140 5 9
HELIX 15 AB6 PRO B 142 GLN B 150 1 9
HELIX 16 AB7 ASP B 182 GLN B 184 5 3
HELIX 17 AB8 SER B 235 GLY B 247 1 13
HELIX 18 AB9 ASN B 260 LEU B 265 5 6
HELIX 19 AC1 THR B 280 VAL B 285 1 6
HELIX 20 AC2 GLY B 316 LYS B 322 1 7
SHEET 1 AA1 9 LYS A 73 TYR A 83 0
SHEET 2 AA1 9 GLY A 86 VAL A 99 -1 O VAL A 88 N LEU A 81
SHEET 3 AA1 9 GLN A 19 ILE A 26 -1 N GLY A 25 O THR A 98
SHEET 4 AA1 9 SER A 8 TYR A 15 -1 N THR A 13 O TYR A 21
SHEET 5 AA1 9 GLY A 174 LEU A 178 -1 O GLY A 174 N LEU A 12
SHEET 6 AA1 9 VAL A 157 TYR A 162 -1 N TYR A 161 O GLN A 175
SHEET 7 AA1 9 PHE A 323 ASP A 328 -1 O PHE A 327 N PHE A 158
SHEET 8 AA1 9 ARG A 333 ALA A 339 -1 O GLY A 335 N GLU A 326
SHEET 9 AA1 9 TYR A 186 ASN A 194 -1 N ILE A 193 O ILE A 334
SHEET 1 AA213 LYS A 73 TYR A 83 0
SHEET 2 AA213 GLY A 86 VAL A 99 -1 O VAL A 88 N LEU A 81
SHEET 3 AA213 ILE A 102 GLU A 113 -1 O VAL A 104 N ILE A 97
SHEET 4 AA213 VAL A 44 PRO A 47 1 N VAL A 44 O GLY A 109
SHEET 5 AA213 GLY A 126 GLY A 129 -1 O VAL A 127 N TRP A 45
SHEET 6 AA213 GLN A 31 ASP A 38 1 N VAL A 36 O VAL A 128
SHEET 7 AA213 GLN A 19 ILE A 26 -1 N GLY A 22 O VAL A 35
SHEET 8 AA213 SER A 8 TYR A 15 -1 N THR A 13 O TYR A 21
SHEET 9 AA213 GLY A 174 LEU A 178 -1 O GLY A 174 N LEU A 12
SHEET 10 AA213 VAL A 157 TYR A 162 -1 N TYR A 161 O GLN A 175
SHEET 11 AA213 PHE A 323 ASP A 328 -1 O PHE A 327 N PHE A 158
SHEET 12 AA213 ARG A 333 ALA A 339 -1 O GLY A 335 N GLU A 326
SHEET 13 AA213 TYR A 186 ASN A 194 -1 N ILE A 193 O ILE A 334
SHEET 1 AA3 5 GLN A 202 MET A 205 0
SHEET 2 AA3 5 CYS A 221 VAL A 225 -1 O CYS A 221 N MET A 205
SHEET 3 AA3 5 TRP A 313 LEU A 315 1 O LEU A 315 N LEU A 224
SHEET 4 AA3 5 ILE A 232 GLY A 234 -1 N SER A 233 O ALA A 314
SHEET 5 AA3 5 ILE A 300 ALA A 302 1 O HIS A 301 N ILE A 232
SHEET 1 AA4 3 GLY A 207 VAL A 210 0
SHEET 2 AA4 3 ILE A 268 LEU A 272 -1 O HIS A 271 N GLY A 207
SHEET 3 AA4 3 LYS A 275 LEU A 279 -1 O LEU A 279 N ILE A 268
SHEET 1 AA5 3 LYS A 249 LYS A 250 0
SHEET 2 AA5 3 TYR A 255 LYS A 258 -1 O VAL A 256 N LYS A 249
SHEET 3 AA5 3 LEU A 295 THR A 297 -1 O CYS A 296 N VAL A 257
SHEET 1 AA6 9 LYS B 73 LEU B 79 0
SHEET 2 AA6 9 GLY B 90 VAL B 99 -1 O GLN B 94 N LYS B 73
SHEET 3 AA6 9 GLN B 19 ILE B 26 -1 N GLY B 25 O THR B 98
SHEET 4 AA6 9 SER B 8 TYR B 15 -1 N THR B 13 O TYR B 21
SHEET 5 AA6 9 GLY B 174 LEU B 178 -1 O LEU B 178 N SER B 8
SHEET 6 AA6 9 VAL B 157 TYR B 162 -1 N TYR B 161 O GLN B 175
SHEET 7 AA6 9 PHE B 323 ASP B 328 -1 O PHE B 327 N PHE B 158
SHEET 8 AA6 9 ARG B 333 ALA B 339 -1 O GLY B 335 N GLU B 326
SHEET 9 AA6 9 TYR B 186 ASN B 194 -1 N ILE B 193 O ILE B 334
SHEET 1 AA713 LYS B 73 LEU B 79 0
SHEET 2 AA713 GLY B 90 VAL B 99 -1 O GLN B 94 N LYS B 73
SHEET 3 AA713 ILE B 102 VAL B 111 -1 O VAL B 104 N ILE B 97
SHEET 4 AA713 VAL B 44 PRO B 47 1 N VAL B 44 O GLY B 109
SHEET 5 AA713 GLY B 126 GLY B 129 -1 O VAL B 127 N TRP B 45
SHEET 6 AA713 GLN B 31 ASP B 38 1 N VAL B 36 O VAL B 128
SHEET 7 AA713 GLN B 19 ILE B 26 -1 N GLY B 22 O VAL B 35
SHEET 8 AA713 SER B 8 TYR B 15 -1 N THR B 13 O TYR B 21
SHEET 9 AA713 GLY B 174 LEU B 178 -1 O LEU B 178 N SER B 8
SHEET 10 AA713 VAL B 157 TYR B 162 -1 N TYR B 161 O GLN B 175
SHEET 11 AA713 PHE B 323 ASP B 328 -1 O PHE B 327 N PHE B 158
SHEET 12 AA713 ARG B 333 ALA B 339 -1 O GLY B 335 N GLU B 326
SHEET 13 AA713 TYR B 186 ASN B 194 -1 N ILE B 193 O ILE B 334
SHEET 1 AA8 5 GLN B 202 MET B 205 0
SHEET 2 AA8 5 CYS B 221 VAL B 225 -1 O ALA B 223 N ILE B 203
SHEET 3 AA8 5 TRP B 313 LEU B 315 1 O LEU B 315 N LEU B 224
SHEET 4 AA8 5 ILE B 232 GLY B 234 -1 N SER B 233 O ALA B 314
SHEET 5 AA8 5 ILE B 300 ALA B 302 1 O HIS B 301 N ILE B 232
SHEET 1 AA9 4 SER B 213 LEU B 216 0
SHEET 2 AA9 4 VAL B 208 VAL B 210 -1 N VAL B 208 O LEU B 216
SHEET 3 AA9 4 ILE B 268 LEU B 272 -1 O SER B 269 N SER B 209
SHEET 4 AA9 4 LYS B 275 LEU B 279 -1 O LEU B 279 N ILE B 268
SHEET 1 AB1 3 LYS B 249 LYS B 250 0
SHEET 2 AB1 3 TYR B 255 LYS B 258 -1 O VAL B 256 N LYS B 249
SHEET 3 AB1 3 LEU B 295 THR B 297 -1 O CYS B 296 N VAL B 257
SSBOND 1 CYS A 51 CYS A 58 1555 1555 2.03
SSBOND 2 CYS A 217 CYS A 221 1555 1555 2.02
SSBOND 3 CYS A 259 CYS A 296 1555 1555 2.03
SSBOND 4 CYS B 51 CYS B 58 1555 1555 2.04
SSBOND 5 CYS B 217 CYS B 221 1555 1555 2.04
SSBOND 6 CYS B 259 CYS B 296 1555 1555 2.03
LINK ND2 ASN B 75 C1 NAG B 401 1555 1555 1.44
CISPEP 1 THR A 28 PRO A 29 0 -3.23
CISPEP 2 LEU A 117 PRO A 118 0 9.79
CISPEP 3 PRO A 307 PRO A 308 0 0.79
CISPEP 4 GLY A 310 PRO A 311 0 -1.90
CISPEP 5 THR B 28 PRO B 29 0 -0.47
CISPEP 6 LEU B 117 PRO B 118 0 2.61
CISPEP 7 PRO B 307 PRO B 308 0 3.96
CISPEP 8 GLY B 310 PRO B 311 0 2.96
CRYST1 137.540 137.540 137.540 90.00 90.00 90.00 P 21 3 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007271 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007271 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007271 0.00000