HEADER TRANSCRIPTION/DNA 10-AUG-16 5SY7 TITLE CRYSTAL STRUCTURE OF THE HETERODIMERIC NPAS3-ARNT COMPLEX WITH HRE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARNT PROTEIN,DIOXIN RECEPTOR,NUCLEAR TRANSLOCATOR,HYPOXIA- COMPND 5 INDUCIBLE FACTOR 1-BETA,HIF1-BETA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NEURONAL PAS DOMAIN-CONTAINING PROTEIN 3; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NEURONAL PAS3,BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP6,MEMBER COMPND 11 OF PAS PROTEIN 6; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*GP*GP*CP*TP*GP*CP*GP*TP*AP*CP*GP*TP*GP*CP*GP*GP*GP*TP*CP*GP*T)- COMPND 16 3'); COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: HRE DNA SENSE STRAND; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: DNA (5'- COMPND 22 D(*CP*AP*CP*GP*AP*CP*CP*CP*GP*CP*AP*CP*GP*TP*AP*CP*GP*CP*AP*GP*C)- COMPND 23 3'); COMPND 24 CHAIN: D; COMPND 25 ENGINEERED: YES; COMPND 26 OTHER_DETAILS: HRE DNA ANTISENSE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ARNT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: NPAS3, MOP6; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 22 ORGANISM_TAXID: 10090 KEYWDS BHLH-PAS PROTEIN, TRANSCRIPTION FACTOR, HETERODIMERIC COMPLEX, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.WU,X.SU,N.POTLURI,Y.KIM,F.RASTINEJAD REVDAT 2 04-OCT-23 5SY7 1 REMARK REVDAT 1 09-NOV-16 5SY7 0 JRNL AUTH D.WU,X.SU,N.POTLURI,Y.KIM,F.RASTINEJAD JRNL TITL NPAS1-ARNT AND NPAS3-ARNT CRYSTAL STRUCTURES IMPLICATE THE JRNL TITL 2 BHLH-PAS FAMILY AS MULTI-LIGAND BINDING TRANSCRIPTION JRNL TITL 3 FACTORS. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27782878 JRNL DOI 10.7554/ELIFE.18790 REMARK 2 REMARK 2 RESOLUTION. 4.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.7 REMARK 3 NUMBER OF REFLECTIONS : 5868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.276 REMARK 3 R VALUE (WORKING SET) : 0.272 REMARK 3 FREE R VALUE : 0.361 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8452 - 5.2753 0.99 3583 165 0.2722 0.3713 REMARK 3 2 5.2753 - 4.1881 0.56 2009 111 0.2713 0.3477 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.780 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5501 REMARK 3 ANGLE : 0.731 7595 REMARK 3 CHIRALITY : 0.045 851 REMARK 3 PLANARITY : 0.005 816 REMARK 3 DIHEDRAL : 17.539 3140 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7195 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.84800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZPK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NH4F, 9% PEG 3350, PH 6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 124.55100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 186.82650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.27550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 81 REMARK 465 SER A 82 REMARK 465 SER A 83 REMARK 465 ALA A 84 REMARK 465 ASP A 85 REMARK 465 LYS A 86 REMARK 465 GLU A 87 REMARK 465 ARG A 88 REMARK 465 ARG A 143 REMARK 465 GLY A 144 REMARK 465 THR A 145 REMARK 465 GLY A 146 REMARK 465 ASN A 147 REMARK 465 THR A 148 REMARK 465 SER A 149 REMARK 465 THR A 150 REMARK 465 ASP A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 TYR A 154 REMARK 465 LYS A 155 REMARK 465 GLU A 229 REMARK 465 ASN A 230 REMARK 465 ALA A 231 REMARK 465 LEU A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 ARG A 235 REMARK 465 VAL A 236 REMARK 465 LEU A 237 REMARK 465 ASP A 238 REMARK 465 LEU A 239 REMARK 465 LYS A 240 REMARK 465 THR A 241 REMARK 465 GLY A 242 REMARK 465 THR A 243 REMARK 465 VAL A 244 REMARK 465 LYS A 245 REMARK 465 LYS A 246 REMARK 465 GLU A 247 REMARK 465 GLY A 248 REMARK 465 GLN A 249 REMARK 465 GLN A 250 REMARK 465 SER A 251 REMARK 465 SER A 252 REMARK 465 MET A 253 REMARK 465 ARG A 254 REMARK 465 MET A 255 REMARK 465 CYS A 256 REMARK 465 MET A 257 REMARK 465 GLY A 258 REMARK 465 SER A 272 REMARK 465 SER A 273 REMARK 465 VAL A 274 REMARK 465 ASP A 275 REMARK 465 PRO A 276 REMARK 465 VAL A 277 REMARK 465 SER A 278 REMARK 465 MET A 279 REMARK 465 ASN A 280 REMARK 465 ARG A 281 REMARK 465 LEU A 282 REMARK 465 SER A 283 REMARK 465 PHE A 284 REMARK 465 LEU A 285 REMARK 465 ARG A 286 REMARK 465 ASN A 287 REMARK 465 ARG A 288 REMARK 465 CYS A 289 REMARK 465 ARG A 290 REMARK 465 ILE A 312 REMARK 465 LYS A 313 REMARK 465 ALA A 314 REMARK 465 TRP A 315 REMARK 465 PRO A 316 REMARK 465 PRO A 317 REMARK 465 ALA A 318 REMARK 465 GLY A 319 REMARK 465 VAL A 320 REMARK 465 SER A 321 REMARK 465 LEU A 322 REMARK 465 PRO A 323 REMARK 465 ASP A 324 REMARK 465 ASP A 325 REMARK 465 ASP A 326 REMARK 465 PRO A 327 REMARK 465 GLU A 328 REMARK 465 ALA A 329 REMARK 465 GLY A 330 REMARK 465 GLN A 331 REMARK 465 GLY A 332 REMARK 465 SER A 333 REMARK 465 LYS A 334 REMARK 465 PHE A 335 REMARK 465 CYS A 336 REMARK 465 ASN A 350 REMARK 465 CYS A 351 REMARK 465 THR A 352 REMARK 465 ASP A 353 REMARK 465 MET A 354 REMARK 465 SER A 355 REMARK 465 ASN A 356 REMARK 465 ILE A 357 REMARK 465 CYS A 358 REMARK 465 GLN A 359 REMARK 465 PRO A 360 REMARK 465 THR A 361 REMARK 465 VAL A 464 REMARK 465 MET B 54 REMARK 465 ILE B 55 REMARK 465 GLN B 56 REMARK 465 ALA B 57 REMARK 465 LEU B 58 REMARK 465 PRO B 119 REMARK 465 PRO B 120 REMARK 465 TRP B 121 REMARK 465 ASN B 122 REMARK 465 LEU B 123 REMARK 465 ARG B 124 REMARK 465 MET B 125 REMARK 465 GLU B 126 REMARK 465 GLY B 127 REMARK 465 PRO B 128 REMARK 465 PRO B 129 REMARK 465 PRO B 130 REMARK 465 ASN B 131 REMARK 465 THR B 132 REMARK 465 SER B 133 REMARK 465 VAL B 134 REMARK 465 LYS B 135 REMARK 465 GLY B 136 REMARK 465 ALA B 137 REMARK 465 GLN B 138 REMARK 465 ARG B 139 REMARK 465 ARG B 140 REMARK 465 ARG B 141 REMARK 465 SER B 142 REMARK 465 PRO B 143 REMARK 465 SER B 144 REMARK 465 ALA B 145 REMARK 465 LEU B 146 REMARK 465 ALA B 147 REMARK 465 LYS B 218 REMARK 465 LEU B 219 REMARK 465 PRO B 220 REMARK 465 PRO B 221 REMARK 465 GLY B 222 REMARK 465 ARG B 223 REMARK 465 GLY B 224 REMARK 465 LEU B 225 REMARK 465 LEU B 226 REMARK 465 SER B 227 REMARK 465 GLN B 228 REMARK 465 GLY B 229 REMARK 465 THR B 230 REMARK 465 THR B 231 REMARK 465 GLU B 232 REMARK 465 ASP B 233 REMARK 465 ALA B 234 REMARK 465 ALA B 235 REMARK 465 SER B 236 REMARK 465 SER B 237 REMARK 465 ALA B 238 REMARK 465 SER B 239 REMARK 465 SER B 240 REMARK 465 SER B 241 REMARK 465 SER B 242 REMARK 465 GLN B 243 REMARK 465 SER B 244 REMARK 465 GLU B 245 REMARK 465 THR B 246 REMARK 465 PRO B 247 REMARK 465 GLU B 248 REMARK 465 PRO B 249 REMARK 465 VAL B 250 REMARK 465 GLU B 251 REMARK 465 THR B 252 REMARK 465 THR B 253 REMARK 465 SER B 254 REMARK 465 PRO B 255 REMARK 465 SER B 256 REMARK 465 LEU B 257 REMARK 465 LEU B 258 REMARK 465 THR B 259 REMARK 465 THR B 260 REMARK 465 ASP B 261 REMARK 465 ASN B 262 REMARK 465 THR B 263 REMARK 465 THR B 277 REMARK 465 LYS B 278 REMARK 465 ARG B 279 REMARK 465 GLY B 280 REMARK 465 VAL B 281 REMARK 465 HIS B 282 REMARK 465 ILE B 283 REMARK 465 LYS B 284 REMARK 465 SER B 285 REMARK 465 SER B 286 REMARK 465 LEU B 299 REMARK 465 ARG B 300 REMARK 465 VAL B 301 REMARK 465 SER B 302 REMARK 465 LEU B 303 REMARK 465 SER B 304 REMARK 465 HIS B 305 REMARK 465 GLY B 306 REMARK 465 ARG B 307 REMARK 465 THR B 308 REMARK 465 VAL B 309 REMARK 465 PRO B 310 REMARK 465 SER B 311 REMARK 465 GLN B 312 REMARK 465 ILE B 313 REMARK 465 PRO B 325 REMARK 465 PRO B 326 REMARK 465 THR B 327 REMARK 465 ILE B 328 REMARK 465 ASN B 329 REMARK 465 GLU B 330 REMARK 465 VAL B 331 REMARK 465 ARG B 332 REMARK 465 ILE B 333 REMARK 465 ASP B 334 REMARK 465 CYS B 335 REMARK 465 ILE B 421 REMARK 465 ASN B 422 REMARK 465 ALA B 423 REMARK 465 LYS B 424 REMARK 465 ASN B 425 REMARK 465 ALA B 426 REMARK 465 ASN B 427 REMARK 465 GLU B 428 REMARK 465 PRO B 454 REMARK 465 HIS B 455 REMARK 465 VAL B 456 REMARK 465 GLU B 457 REMARK 465 HIS B 458 REMARK 465 HIS B 459 REMARK 465 HIS B 460 REMARK 465 HIS B 461 REMARK 465 HIS B 462 REMARK 465 HIS B 463 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 82 OG1 THR B 92 1.98 REMARK 500 N2 DG C 17 O2 DC D 6 2.12 REMARK 500 NH2 ARG A 260 O GLN B 161 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 226 N - CA - CB ANGL. DEV. = -9.7 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT D 14 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 115 -62.17 -92.42 REMARK 500 SER A 141 7.91 -69.42 REMARK 500 PHE A 158 -44.72 63.48 REMARK 500 ALA A 172 55.03 -153.70 REMARK 500 GLU A 182 -47.56 -148.78 REMARK 500 VAL A 186 97.19 -68.69 REMARK 500 GLU A 223 1.56 -61.59 REMARK 500 LEU A 225 55.87 -91.24 REMARK 500 THR A 227 -154.45 -144.14 REMARK 500 CYS A 269 -84.22 -83.79 REMARK 500 LEU A 293 69.47 -154.05 REMARK 500 GLN A 344 77.16 -118.37 REMARK 500 SER A 347 -29.24 -160.48 REMARK 500 PHE A 373 104.89 -56.54 REMARK 500 PHE A 375 137.52 -172.29 REMARK 500 LYS A 419 -138.37 56.03 REMARK 500 LYS A 432 34.84 -92.39 REMARK 500 ARG A 434 67.46 76.60 REMARK 500 TYR A 450 -75.16 -110.11 REMARK 500 TYR A 456 -173.80 -173.92 REMARK 500 SER B 93 -74.79 -71.68 REMARK 500 PHE B 151 1.38 -60.90 REMARK 500 HIS B 154 54.36 -104.38 REMARK 500 PHE B 176 105.96 -51.84 REMARK 500 SER B 267 114.83 -164.48 REMARK 500 LYS B 273 104.95 -51.54 REMARK 500 THR B 275 44.98 -107.55 REMARK 500 ILE B 348 108.00 -56.59 REMARK 500 ILE B 349 -71.41 -86.44 REMARK 500 ARG B 354 -7.12 -54.06 REMARK 500 PRO B 363 19.29 -53.44 REMARK 500 ILE B 366 -30.96 -130.14 REMARK 500 TYR B 410 161.96 177.16 REMARK 500 ASP B 445 -70.44 -82.68 REMARK 500 MET B 448 -60.19 -93.02 REMARK 500 ALA B 451 1.12 -68.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 5SY7 A 82 464 UNP P53762 ARNT_MOUSE 82 464 DBREF 5SY7 B 56 455 UNP Q9QZQ0 NPAS3_MOUSE 56 455 DBREF 5SY7 C 1 21 PDB 5SY7 5SY7 1 21 DBREF 5SY7 D 1 21 PDB 5SY7 5SY7 1 21 SEQADV 5SY7 MET A 81 UNP P53762 INITIATING METHIONINE SEQADV 5SY7 MET B 54 UNP Q9QZQ0 INITIATING METHIONINE SEQADV 5SY7 ILE B 55 UNP Q9QZQ0 EXPRESSION TAG SEQADV 5SY7 SER B 302 UNP Q9QZQ0 PRO 302 CONFLICT SEQADV 5SY7 VAL B 456 UNP Q9QZQ0 EXPRESSION TAG SEQADV 5SY7 GLU B 457 UNP Q9QZQ0 EXPRESSION TAG SEQADV 5SY7 HIS B 458 UNP Q9QZQ0 EXPRESSION TAG SEQADV 5SY7 HIS B 459 UNP Q9QZQ0 EXPRESSION TAG SEQADV 5SY7 HIS B 460 UNP Q9QZQ0 EXPRESSION TAG SEQADV 5SY7 HIS B 461 UNP Q9QZQ0 EXPRESSION TAG SEQADV 5SY7 HIS B 462 UNP Q9QZQ0 EXPRESSION TAG SEQADV 5SY7 HIS B 463 UNP Q9QZQ0 EXPRESSION TAG SEQRES 1 A 384 MET SER SER ALA ASP LYS GLU ARG LEU ALA ARG GLU ASN SEQRES 2 A 384 HIS SER GLU ILE GLU ARG ARG ARG ARG ASN LYS MET THR SEQRES 3 A 384 ALA TYR ILE THR GLU LEU SER ASP MET VAL PRO THR CYS SEQRES 4 A 384 SER ALA LEU ALA ARG LYS PRO ASP LYS LEU THR ILE LEU SEQRES 5 A 384 ARG MET ALA VAL SER HIS MET LYS SER LEU ARG GLY THR SEQRES 6 A 384 GLY ASN THR SER THR ASP GLY SER TYR LYS PRO SER PHE SEQRES 7 A 384 LEU THR ASP GLN GLU LEU LYS HIS LEU ILE LEU GLU ALA SEQRES 8 A 384 ALA ASP GLY PHE LEU PHE ILE VAL SER CYS GLU THR GLY SEQRES 9 A 384 ARG VAL VAL TYR VAL SER ASP SER VAL THR PRO VAL LEU SEQRES 10 A 384 ASN GLN PRO GLN SER GLU TRP PHE GLY SER THR LEU TYR SEQRES 11 A 384 ASP GLN VAL HIS PRO ASP ASP VAL ASP LYS LEU ARG GLU SEQRES 12 A 384 GLN LEU SER THR SER GLU ASN ALA LEU THR GLY ARG VAL SEQRES 13 A 384 LEU ASP LEU LYS THR GLY THR VAL LYS LYS GLU GLY GLN SEQRES 14 A 384 GLN SER SER MET ARG MET CYS MET GLY SER ARG ARG SER SEQRES 15 A 384 PHE ILE CYS ARG MET ARG CYS GLY THR SER SER VAL ASP SEQRES 16 A 384 PRO VAL SER MET ASN ARG LEU SER PHE LEU ARG ASN ARG SEQRES 17 A 384 CYS ARG ASN GLY LEU GLY SER VAL LYS GLU GLY GLU PRO SEQRES 18 A 384 HIS PHE VAL VAL VAL HIS CYS THR GLY TYR ILE LYS ALA SEQRES 19 A 384 TRP PRO PRO ALA GLY VAL SER LEU PRO ASP ASP ASP PRO SEQRES 20 A 384 GLU ALA GLY GLN GLY SER LYS PHE CYS LEU VAL ALA ILE SEQRES 21 A 384 GLY ARG LEU GLN VAL THR SER SER PRO ASN CYS THR ASP SEQRES 22 A 384 MET SER ASN ILE CYS GLN PRO THR GLU PHE ILE SER ARG SEQRES 23 A 384 HIS ASN ILE GLU GLY ILE PHE THR PHE VAL ASP HIS ARG SEQRES 24 A 384 CYS VAL ALA THR VAL GLY TYR GLN PRO GLN GLU LEU LEU SEQRES 25 A 384 GLY LYS ASN ILE VAL GLU PHE CYS HIS PRO GLU ASP GLN SEQRES 26 A 384 GLN LEU LEU ARG ASP SER PHE GLN GLN VAL VAL LYS LEU SEQRES 27 A 384 LYS GLY GLN VAL LEU SER VAL MET PHE ARG PHE ARG SER SEQRES 28 A 384 LYS THR ARG GLU TRP LEU TRP MET ARG THR SER SER PHE SEQRES 29 A 384 THR PHE GLN ASN PRO TYR SER ASP GLU ILE GLU TYR ILE SEQRES 30 A 384 ILE CYS THR ASN THR ASN VAL SEQRES 1 B 410 MET ILE GLN ALA LEU ARG LYS GLU LYS SER ARG ASP ALA SEQRES 2 B 410 ALA ARG SER ARG ARG GLY LYS GLU ASN PHE GLU PHE TYR SEQRES 3 B 410 GLU LEU ALA LYS LEU LEU PRO LEU PRO ALA ALA ILE THR SEQRES 4 B 410 SER GLN LEU ASP LYS ALA SER ILE ILE ARG LEU THR ILE SEQRES 5 B 410 SER TYR LEU LYS MET ARG ASP PHE ALA ASN GLN GLY ASP SEQRES 6 B 410 PRO PRO TRP ASN LEU ARG MET GLU GLY PRO PRO PRO ASN SEQRES 7 B 410 THR SER VAL LYS GLY ALA GLN ARG ARG ARG SER PRO SER SEQRES 8 B 410 ALA LEU ALA ILE GLU VAL PHE GLU ALA HIS LEU GLY SER SEQRES 9 B 410 HIS ILE LEU GLN SER LEU ASP GLY PHE VAL PHE ALA LEU SEQRES 10 B 410 ASN GLN GLU GLY LYS PHE LEU TYR ILE SER GLU THR VAL SEQRES 11 B 410 SER ILE TYR LEU GLY LEU SER GLN VAL GLU LEU THR GLY SEQRES 12 B 410 SER SER VAL PHE ASP TYR VAL HIS PRO GLY ASP HIS VAL SEQRES 13 B 410 GLU MET ALA GLU GLN LEU GLY MET LYS LEU PRO PRO GLY SEQRES 14 B 410 ARG GLY LEU LEU SER GLN GLY THR THR GLU ASP ALA ALA SEQRES 15 B 410 SER SER ALA SER SER SER SER GLN SER GLU THR PRO GLU SEQRES 16 B 410 PRO VAL GLU THR THR SER PRO SER LEU LEU THR THR ASP SEQRES 17 B 410 ASN THR LEU GLU ARG SER PHE PHE ILE ARG MET LYS SER SEQRES 18 B 410 THR LEU THR LYS ARG GLY VAL HIS ILE LYS SER SER GLY SEQRES 19 B 410 TYR LYS VAL ILE HIS ILE THR GLY ARG LEU ARG LEU ARG SEQRES 20 B 410 VAL SER LEU SER HIS GLY ARG THR VAL PRO SER GLN ILE SEQRES 21 B 410 MET GLY LEU VAL VAL VAL ALA HIS ALA LEU PRO PRO PRO SEQRES 22 B 410 THR ILE ASN GLU VAL ARG ILE ASP CYS HIS MET PHE VAL SEQRES 23 B 410 THR ARG VAL ASN MET ASP LEU ASN ILE ILE TYR CYS GLU SEQRES 24 B 410 ASN ARG ILE SER ASP TYR MET ASP LEU THR PRO VAL ASP SEQRES 25 B 410 ILE VAL GLY LYS ARG CYS TYR HIS PHE ILE HIS ALA GLU SEQRES 26 B 410 ASP VAL GLU GLY ILE ARG HIS SER HIS LEU ASP LEU LEU SEQRES 27 B 410 ASN LYS GLY GLN CYS VAL THR LYS TYR TYR ARG TRP MET SEQRES 28 B 410 GLN LYS ASN GLY GLY TYR ILE TRP ILE GLN SER SER ALA SEQRES 29 B 410 THR ILE ALA ILE ASN ALA LYS ASN ALA ASN GLU LYS ASN SEQRES 30 B 410 ILE ILE TRP VAL ASN TYR LEU LEU SER ASN PRO GLU TYR SEQRES 31 B 410 LYS ASP THR PRO MET ASP ILE ALA GLN LEU PRO HIS VAL SEQRES 32 B 410 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 21 DG DG DC DT DG DC DG DT DA DC DG DT DG SEQRES 2 C 21 DC DG DG DG DT DC DG DT SEQRES 1 D 21 DC DA DC DG DA DC DC DC DG DC DA DC DG SEQRES 2 D 21 DT DA DC DG DC DA DG DC HELIX 1 AA1 ALA A 90 ASP A 114 1 25 HELIX 2 AA2 VAL A 116 LEU A 122 1 7 HELIX 3 AA3 ASP A 127 SER A 141 1 15 HELIX 4 AA4 THR A 160 ASP A 173 1 14 HELIX 5 AA5 VAL A 193 ASN A 198 1 6 HELIX 6 AA6 PRO A 200 PHE A 205 1 6 HELIX 7 AA7 THR A 208 VAL A 213 1 6 HELIX 8 AA8 ASP A 217 GLU A 223 1 7 HELIX 9 AA9 ARG A 379 VAL A 384 1 6 HELIX 10 AB1 GLN A 387 LEU A 391 5 5 HELIX 11 AB2 ASN A 395 CYS A 400 5 6 HELIX 12 AB3 ASP A 404 LEU A 418 1 15 HELIX 13 AB4 LYS B 60 LEU B 84 1 25 HELIX 14 AB5 PRO B 88 GLN B 94 1 7 HELIX 15 AB6 ASP B 96 ASN B 115 1 20 HELIX 16 AB7 GLU B 149 HIS B 154 1 6 HELIX 17 AB8 HIS B 154 LEU B 163 1 10 HELIX 18 AB9 THR B 182 LEU B 187 1 6 HELIX 19 AC1 SER B 190 THR B 195 1 6 HELIX 20 AC2 SER B 198 VAL B 203 5 6 HELIX 21 AC3 ASP B 207 LEU B 215 1 9 HELIX 22 AC4 ARG B 354 MET B 359 1 6 HELIX 23 AC5 ARG B 370 PHE B 374 5 5 HELIX 24 AC6 ASP B 379 GLY B 394 1 16 HELIX 25 AC7 ASP B 449 LEU B 453 5 5 SHEET 1 AA1 5 VAL A 186 VAL A 189 0 SHEET 2 AA1 5 PHE A 175 VAL A 179 -1 N ILE A 178 O TYR A 188 SHEET 3 AA1 5 VAL A 338 LEU A 343 -1 O GLY A 341 N PHE A 175 SHEET 4 AA1 5 PHE A 303 GLY A 310 -1 N HIS A 307 O ARG A 342 SHEET 5 AA1 5 ARG A 261 ARG A 268 -1 N PHE A 263 O CYS A 308 SHEET 1 AA2 5 PHE A 373 VAL A 376 0 SHEET 2 AA2 5 PHE A 363 HIS A 367 -1 N ARG A 366 O THR A 374 SHEET 3 AA2 5 ILE A 454 THR A 462 -1 O CYS A 459 N SER A 365 SHEET 4 AA2 5 TRP A 436 GLN A 447 -1 N ARG A 440 O THR A 462 SHEET 5 AA2 5 LEU A 423 ARG A 430 -1 N PHE A 429 O LEU A 437 SHEET 1 AA3 5 TYR B 178 ILE B 179 0 SHEET 2 AA3 5 GLY B 165 ALA B 169 -1 N ALA B 169 O TYR B 178 SHEET 3 AA3 5 VAL B 317 HIS B 321 -1 O VAL B 318 N PHE B 168 SHEET 4 AA3 5 TYR B 288 ARG B 296 -1 N THR B 294 O VAL B 319 SHEET 5 AA3 5 GLU B 265 LYS B 273 -1 N PHE B 268 O ILE B 293 SHEET 1 AA4 5 ILE B 348 CYS B 351 0 SHEET 2 AA4 5 MET B 337 VAL B 342 -1 N ARG B 341 O ILE B 349 SHEET 3 AA4 5 ILE B 431 LEU B 437 -1 O ASN B 435 N PHE B 338 SHEET 4 AA4 5 ILE B 411 THR B 418 -1 N GLN B 414 O TYR B 436 SHEET 5 AA4 5 GLN B 395 VAL B 397 -1 N CYS B 396 O ALA B 417 SHEET 1 AA5 5 ILE B 348 CYS B 351 0 SHEET 2 AA5 5 MET B 337 VAL B 342 -1 N ARG B 341 O ILE B 349 SHEET 3 AA5 5 ILE B 431 LEU B 437 -1 O ASN B 435 N PHE B 338 SHEET 4 AA5 5 ILE B 411 THR B 418 -1 N GLN B 414 O TYR B 436 SHEET 5 AA5 5 TYR B 401 TRP B 403 -1 N TRP B 403 O ILE B 411 CRYST1 64.831 64.831 249.102 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004014 0.00000