data_5SY9 # _entry.id 5SY9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5SY9 pdb_00005sy9 10.2210/pdb5sy9/pdb WWPDB D_1000223326 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '5sy6 is wild-type DJ-1' 5sy6 unspecified PDB . 5SYA unspecified PDB . 5sy4 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5SY9 _pdbx_database_status.recvd_initial_deposition_date 2016-08-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wilson, M.A.' 1 'Lin, J.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 1520-4995 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 56 _citation.language ? _citation.page_first 391 _citation.page_last 402 _citation.title 'Short Carboxylic Acid-Carboxylate Hydrogen Bonds Can Have Fully Localized Protons.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.6b00906 _citation.pdbx_database_id_PubMed 27989121 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lin, J.' 1 ? primary 'Pozharski, E.' 2 ? primary 'Wilson, M.A.' 3 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5SY9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 86.276 _cell.length_a_esd ? _cell.length_b 121.963 _cell.length_b_esd ? _cell.length_c 43.512 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein deglycase DJ-1' 20230.342 1 3.1.2.-,3.5.1.- E15Q ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 3 water nat water 18.015 308 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DJ-1,Oncogene DJ1,Parkinson disease protein 7' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSHMASKRALVILAKGAQEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL GAQNLSESAAVKEILKEQENRKGLIAAI(CSD)AGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLIL TSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKD ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMASKRALVILAKGAQEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL GAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRG PGTSFEFALAIVEALNGKEVAAQVKAPLVLKD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 SER n 1 7 LYS n 1 8 ARG n 1 9 ALA n 1 10 LEU n 1 11 VAL n 1 12 ILE n 1 13 LEU n 1 14 ALA n 1 15 LYS n 1 16 GLY n 1 17 ALA n 1 18 GLN n 1 19 GLU n 1 20 MET n 1 21 GLU n 1 22 THR n 1 23 VAL n 1 24 ILE n 1 25 PRO n 1 26 VAL n 1 27 ASP n 1 28 VAL n 1 29 MET n 1 30 ARG n 1 31 ARG n 1 32 ALA n 1 33 GLY n 1 34 ILE n 1 35 LYS n 1 36 VAL n 1 37 THR n 1 38 VAL n 1 39 ALA n 1 40 GLY n 1 41 LEU n 1 42 ALA n 1 43 GLY n 1 44 LYS n 1 45 ASP n 1 46 PRO n 1 47 VAL n 1 48 GLN n 1 49 CYS n 1 50 SER n 1 51 ARG n 1 52 ASP n 1 53 VAL n 1 54 VAL n 1 55 ILE n 1 56 CYS n 1 57 PRO n 1 58 ASP n 1 59 ALA n 1 60 SER n 1 61 LEU n 1 62 GLU n 1 63 ASP n 1 64 ALA n 1 65 LYS n 1 66 LYS n 1 67 GLU n 1 68 GLY n 1 69 PRO n 1 70 TYR n 1 71 ASP n 1 72 VAL n 1 73 VAL n 1 74 VAL n 1 75 LEU n 1 76 PRO n 1 77 GLY n 1 78 GLY n 1 79 ASN n 1 80 LEU n 1 81 GLY n 1 82 ALA n 1 83 GLN n 1 84 ASN n 1 85 LEU n 1 86 SER n 1 87 GLU n 1 88 SER n 1 89 ALA n 1 90 ALA n 1 91 VAL n 1 92 LYS n 1 93 GLU n 1 94 ILE n 1 95 LEU n 1 96 LYS n 1 97 GLU n 1 98 GLN n 1 99 GLU n 1 100 ASN n 1 101 ARG n 1 102 LYS n 1 103 GLY n 1 104 LEU n 1 105 ILE n 1 106 ALA n 1 107 ALA n 1 108 ILE n 1 109 CSD n 1 110 ALA n 1 111 GLY n 1 112 PRO n 1 113 THR n 1 114 ALA n 1 115 LEU n 1 116 LEU n 1 117 ALA n 1 118 HIS n 1 119 GLU n 1 120 ILE n 1 121 GLY n 1 122 PHE n 1 123 GLY n 1 124 SER n 1 125 LYS n 1 126 VAL n 1 127 THR n 1 128 THR n 1 129 HIS n 1 130 PRO n 1 131 LEU n 1 132 ALA n 1 133 LYS n 1 134 ASP n 1 135 LYS n 1 136 MET n 1 137 MET n 1 138 ASN n 1 139 GLY n 1 140 GLY n 1 141 HIS n 1 142 TYR n 1 143 THR n 1 144 TYR n 1 145 SER n 1 146 GLU n 1 147 ASN n 1 148 ARG n 1 149 VAL n 1 150 GLU n 1 151 LYS n 1 152 ASP n 1 153 GLY n 1 154 LEU n 1 155 ILE n 1 156 LEU n 1 157 THR n 1 158 SER n 1 159 ARG n 1 160 GLY n 1 161 PRO n 1 162 GLY n 1 163 THR n 1 164 SER n 1 165 PHE n 1 166 GLU n 1 167 PHE n 1 168 ALA n 1 169 LEU n 1 170 ALA n 1 171 ILE n 1 172 VAL n 1 173 GLU n 1 174 ALA n 1 175 LEU n 1 176 ASN n 1 177 GLY n 1 178 LYS n 1 179 GLU n 1 180 VAL n 1 181 ALA n 1 182 ALA n 1 183 GLN n 1 184 VAL n 1 185 LYS n 1 186 ALA n 1 187 PRO n 1 188 LEU n 1 189 VAL n 1 190 LEU n 1 191 LYS n 1 192 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 192 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PARK7 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PARK7_HUMAN _struct_ref.pdbx_db_accession Q99497 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQ NLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGT SFEFALAIVEALNGKEVAAQVKAPLVLKD ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5SY9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 192 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99497 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 189 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 189 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5SY9 GLY A 1 ? UNP Q99497 ? ? 'expression tag' -2 1 1 5SY9 SER A 2 ? UNP Q99497 ? ? 'expression tag' -1 2 1 5SY9 HIS A 3 ? UNP Q99497 ? ? 'expression tag' 0 3 1 5SY9 GLN A 18 ? UNP Q99497 GLU 15 'engineered mutation' 15 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CSD 'L-peptide linking' n 3-SULFINOALANINE 'S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE' 'C3 H7 N O4 S' 153.157 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5SY9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.83 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '25-28% PEG 4000, 0.1 M Tris HCl, 0.1 M sodium citrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'Rh coated collimating mirror, K-B focusing mirrors' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-02-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.88 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.88 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5SY9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.1 _reflns.d_resolution_low 37 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 91327 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.1 _reflns.pdbx_Rmerge_I_obs 0.070 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.1 _reflns_shell.d_res_low 1.12 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 85.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.066 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.569 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.35 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -0.44 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.10 _refine.B_iso_max ? _refine.B_iso_mean 13.225 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.984 _refine.correlation_coeff_Fo_to_Fc_free 0.976 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5SY9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.10 _refine.ls_d_res_low 37 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 88556 _refine.ls_number_reflns_R_free 2751 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.91 _refine.ls_percent_reflns_R_free 3.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.11837 _refine.ls_R_factor_R_free 0.13735 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.11777 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1p5f _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.022 _refine.pdbx_overall_ESU_R_Free 0.023 _refine.pdbx_solvent_vdw_probe_radii 1.30 _refine.pdbx_solvent_ion_probe_radii 1.00 _refine.pdbx_solvent_shrinkage_radii 1.00 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.749 _refine.overall_SU_ML 0.015 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1385 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 308 _refine_hist.number_atoms_total 1713 _refine_hist.d_res_high 1.10 _refine_hist.d_res_low 37 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.014 0.019 1690 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 1741 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.821 2.013 2306 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.046 3.000 4062 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.327 5.000 246 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 42.483 26.129 62 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 11.549 15.000 324 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 17.445 15.000 7 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.117 0.200 266 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 0.021 1965 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 322 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 0.852 0.932 873 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 0.809 0.929 872 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 1.214 1.411 1119 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 1.229 1.413 1120 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.392 1.220 817 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.393 1.220 817 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 1.572 1.690 1173 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 8.630 17.461 2198 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.384 14.005 1981 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 2.126 3.000 3431 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 49.608 5.000 42 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 13.182 5.000 3658 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.100 _refine_ls_shell.d_res_low 1.129 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 174 _refine_ls_shell.number_reflns_R_work 5770 _refine_ls_shell.percent_reflns_obs 87.55 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.322 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.287 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5SY9 _struct.title 'Atomic resolution structure of E15Q mutant human DJ-1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5SY9 _struct_keywords.text 'DJ-1/PfpI superfamily oxidative stress nucleophile elbow, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 18 ? ALA A 32 ? GLN A 15 ALA A 29 1 ? 15 HELX_P HELX_P2 AA2 LEU A 61 ? LYS A 65 ? LEU A 58 LYS A 62 1 ? 5 HELX_P HELX_P3 AA3 LYS A 66 ? GLY A 68 ? LYS A 63 GLY A 65 5 ? 3 HELX_P HELX_P4 AA4 GLY A 78 ? SER A 88 ? GLY A 75 SER A 85 1 ? 11 HELX_P HELX_P5 AA5 SER A 88 ? ARG A 101 ? SER A 85 ARG A 98 1 ? 14 HELX_P HELX_P6 AA6 GLY A 111 ? HIS A 118 ? GLY A 108 HIS A 115 1 ? 8 HELX_P HELX_P7 AA7 HIS A 129 ? LEU A 131 ? HIS A 126 LEU A 128 5 ? 3 HELX_P HELX_P8 AA8 ALA A 132 ? ASN A 138 ? ALA A 129 ASN A 135 1 ? 7 HELX_P HELX_P9 AA9 GLY A 160 ? GLY A 162 ? GLY A 157 GLY A 159 5 ? 3 HELX_P HELX_P10 AB1 THR A 163 ? GLY A 177 ? THR A 160 GLY A 174 1 ? 15 HELX_P HELX_P11 AB2 GLY A 177 ? ALA A 186 ? GLY A 174 ALA A 183 1 ? 10 HELX_P HELX_P12 AB3 PRO A 187 ? VAL A 189 ? PRO A 184 VAL A 186 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 56 SG A ? ? 1_555 A CYS 56 SG A ? A CYS 53 A CYS 53 3_554 ? ? ? ? ? ? ? 2.732 ? ? covale1 covale both ? A ILE 108 C ? ? ? 1_555 A CSD 109 N ? ? A ILE 105 A CSD 106 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale2 covale both ? A CSD 109 C ? ? ? 1_555 A ALA 110 N ? ? A CSD 106 A ALA 107 1_555 ? ? ? ? ? ? ? 1.398 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 68 A . ? GLY 65 A PRO 69 A ? PRO 66 A 1 16.89 2 GLY 68 A . ? GLY 65 A PRO 69 A ? PRO 66 A 1 -11.48 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 2 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 59 ? SER A 60 ? ALA A 56 SER A 57 AA1 2 LYS A 35 ? GLY A 40 ? LYS A 32 GLY A 37 AA1 3 ARG A 8 ? LEU A 13 ? ARG A 5 LEU A 10 AA1 4 VAL A 72 ? LEU A 75 ? VAL A 69 LEU A 72 AA1 5 LEU A 104 ? ILE A 108 ? LEU A 101 ILE A 105 AA1 6 ILE A 155 ? SER A 158 ? ILE A 152 SER A 155 AA1 7 VAL A 149 ? ASP A 152 ? VAL A 146 ASP A 149 AA2 1 VAL A 47 ? GLN A 48 ? VAL A 44 GLN A 45 AA2 2 VAL A 54 ? ILE A 55 ? VAL A 51 ILE A 52 AA3 1 LYS A 125 ? VAL A 126 ? LYS A 122 VAL A 123 AA3 2 THR A 143 ? TYR A 144 ? THR A 140 TYR A 141 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ALA A 59 ? O ALA A 56 N GLY A 40 ? N GLY A 37 AA1 2 3 O ALA A 39 ? O ALA A 36 N LEU A 13 ? N LEU A 10 AA1 3 4 N LEU A 10 ? N LEU A 7 O VAL A 74 ? O VAL A 71 AA1 4 5 N LEU A 75 ? N LEU A 72 O ALA A 106 ? O ALA A 103 AA1 5 6 N ILE A 105 ? N ILE A 102 O LEU A 156 ? O LEU A 153 AA1 6 7 O THR A 157 ? O THR A 154 N GLU A 150 ? N GLU A 147 AA2 1 2 N VAL A 47 ? N VAL A 44 O ILE A 55 ? O ILE A 52 AA3 1 2 N VAL A 126 ? N VAL A 123 O THR A 143 ? O THR A 140 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 201 ? 8 'binding site for residue EDO A 201' AC2 Software A EDO 202 ? 10 'binding site for residue EDO A 202' AC3 Software A EDO 203 ? 9 'binding site for residue EDO A 203' AC4 Software A EDO 204 ? 4 'binding site for residue EDO A 204' AC5 Software A EDO 205 ? 3 'binding site for residue EDO A 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 GLY A 68 ? GLY A 65 . ? 1_555 ? 2 AC1 8 PRO A 69 ? PRO A 66 . ? 1_555 ? 3 AC1 8 TYR A 70 ? TYR A 67 . ? 1_555 ? 4 AC1 8 ILE A 94 ? ILE A 91 . ? 1_555 ? 5 AC1 8 GLU A 97 ? GLU A 94 . ? 1_555 ? 6 AC1 8 GLN A 98 ? GLN A 95 . ? 1_555 ? 7 AC1 8 HOH G . ? HOH A 318 . ? 1_555 ? 8 AC1 8 HOH G . ? HOH A 326 . ? 1_555 ? 9 AC2 10 GLY A 140 ? GLY A 137 . ? 6_444 ? 10 AC2 10 HIS A 141 ? HIS A 138 . ? 6_444 ? 11 AC2 10 TYR A 142 ? TYR A 139 . ? 6_444 ? 12 AC2 10 THR A 143 ? THR A 140 . ? 6_444 ? 13 AC2 10 LYS A 151 ? LYS A 148 . ? 1_555 ? 14 AC2 10 GLU A 173 ? GLU A 170 . ? 1_555 ? 15 AC2 10 ALA A 174 ? ALA A 171 . ? 1_555 ? 16 AC2 10 HOH G . ? HOH A 310 . ? 1_555 ? 17 AC2 10 HOH G . ? HOH A 390 . ? 1_555 ? 18 AC2 10 HOH G . ? HOH A 491 . ? 1_555 ? 19 AC3 9 ARG A 31 ? ARG A 28 . ? 3_554 ? 20 AC3 9 CSD A 109 ? CSD A 106 . ? 1_555 ? 21 AC3 9 HIS A 129 ? HIS A 126 . ? 1_555 ? 22 AC3 9 PRO A 161 ? PRO A 158 . ? 1_555 ? 23 AC3 9 PRO A 187 ? PRO A 184 . ? 3_554 ? 24 AC3 9 EDO F . ? EDO A 205 . ? 1_555 ? 25 AC3 9 HOH G . ? HOH A 301 . ? 1_555 ? 26 AC3 9 HOH G . ? HOH A 371 . ? 1_555 ? 27 AC3 9 HOH G . ? HOH A 414 . ? 1_555 ? 28 AC4 4 GLU A 119 ? GLU A 116 . ? 1_555 ? 29 AC4 4 PHE A 122 ? PHE A 119 . ? 1_555 ? 30 AC4 4 HOH G . ? HOH A 321 . ? 1_555 ? 31 AC4 4 HOH G . ? HOH A 354 . ? 1_555 ? 32 AC5 3 ASN A 79 ? ASN A 76 . ? 1_555 ? 33 AC5 3 EDO D . ? EDO A 203 . ? 1_555 ? 34 AC5 3 HOH G . ? HOH A 454 . ? 1_555 ? # _atom_sites.entry_id 5SY9 _atom_sites.fract_transf_matrix[1][1] 0.011591 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008199 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022982 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 ALA 5 2 2 ALA ALA A . n A 1 6 SER 6 3 3 SER SER A . n A 1 7 LYS 7 4 4 LYS LYS A . n A 1 8 ARG 8 5 5 ARG ARG A . n A 1 9 ALA 9 6 6 ALA ALA A . n A 1 10 LEU 10 7 7 LEU LEU A . n A 1 11 VAL 11 8 8 VAL VAL A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 LEU 13 10 10 LEU LEU A . n A 1 14 ALA 14 11 11 ALA ALA A . n A 1 15 LYS 15 12 12 LYS LYS A . n A 1 16 GLY 16 13 13 GLY GLY A . n A 1 17 ALA 17 14 14 ALA ALA A . n A 1 18 GLN 18 15 15 GLN GLN A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 MET 20 17 17 MET MET A . n A 1 21 GLU 21 18 18 GLU GLU A . n A 1 22 THR 22 19 19 THR THR A . n A 1 23 VAL 23 20 20 VAL VAL A . n A 1 24 ILE 24 21 21 ILE ILE A . n A 1 25 PRO 25 22 22 PRO PRO A . n A 1 26 VAL 26 23 23 VAL VAL A . n A 1 27 ASP 27 24 24 ASP ASP A . n A 1 28 VAL 28 25 25 VAL VAL A . n A 1 29 MET 29 26 26 MET MET A . n A 1 30 ARG 30 27 27 ARG ARG A . n A 1 31 ARG 31 28 28 ARG ARG A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 GLY 33 30 30 GLY GLY A . n A 1 34 ILE 34 31 31 ILE ILE A . n A 1 35 LYS 35 32 32 LYS LYS A . n A 1 36 VAL 36 33 33 VAL VAL A . n A 1 37 THR 37 34 34 THR THR A . n A 1 38 VAL 38 35 35 VAL VAL A . n A 1 39 ALA 39 36 36 ALA ALA A . n A 1 40 GLY 40 37 37 GLY GLY A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 ALA 42 39 39 ALA ALA A . n A 1 43 GLY 43 40 40 GLY GLY A . n A 1 44 LYS 44 41 41 LYS LYS A . n A 1 45 ASP 45 42 42 ASP ASP A . n A 1 46 PRO 46 43 43 PRO PRO A . n A 1 47 VAL 47 44 44 VAL VAL A . n A 1 48 GLN 48 45 45 GLN GLN A . n A 1 49 CYS 49 46 46 CYS CYS A . n A 1 50 SER 50 47 47 SER SER A . n A 1 51 ARG 51 48 48 ARG ARG A . n A 1 52 ASP 52 49 49 ASP ASP A . n A 1 53 VAL 53 50 50 VAL VAL A . n A 1 54 VAL 54 51 51 VAL VAL A . n A 1 55 ILE 55 52 52 ILE ILE A . n A 1 56 CYS 56 53 53 CYS CYS A . n A 1 57 PRO 57 54 54 PRO PRO A . n A 1 58 ASP 58 55 55 ASP ASP A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 SER 60 57 57 SER SER A . n A 1 61 LEU 61 58 58 LEU LEU A . n A 1 62 GLU 62 59 59 GLU GLU A . n A 1 63 ASP 63 60 60 ASP ASP A . n A 1 64 ALA 64 61 61 ALA ALA A . n A 1 65 LYS 65 62 62 LYS LYS A . n A 1 66 LYS 66 63 63 LYS LYS A . n A 1 67 GLU 67 64 64 GLU GLU A . n A 1 68 GLY 68 65 65 GLY GLY A . n A 1 69 PRO 69 66 66 PRO PRO A . n A 1 70 TYR 70 67 67 TYR TYR A . n A 1 71 ASP 71 68 68 ASP ASP A . n A 1 72 VAL 72 69 69 VAL VAL A . n A 1 73 VAL 73 70 70 VAL VAL A . n A 1 74 VAL 74 71 71 VAL VAL A . n A 1 75 LEU 75 72 72 LEU LEU A . n A 1 76 PRO 76 73 73 PRO PRO A . n A 1 77 GLY 77 74 74 GLY GLY A . n A 1 78 GLY 78 75 75 GLY GLY A . n A 1 79 ASN 79 76 76 ASN ASN A . n A 1 80 LEU 80 77 77 LEU LEU A . n A 1 81 GLY 81 78 78 GLY GLY A . n A 1 82 ALA 82 79 79 ALA ALA A . n A 1 83 GLN 83 80 80 GLN GLN A . n A 1 84 ASN 84 81 81 ASN ASN A . n A 1 85 LEU 85 82 82 LEU LEU A . n A 1 86 SER 86 83 83 SER SER A . n A 1 87 GLU 87 84 84 GLU GLU A . n A 1 88 SER 88 85 85 SER SER A . n A 1 89 ALA 89 86 86 ALA ALA A . n A 1 90 ALA 90 87 87 ALA ALA A . n A 1 91 VAL 91 88 88 VAL VAL A . n A 1 92 LYS 92 89 89 LYS LYS A . n A 1 93 GLU 93 90 90 GLU GLU A . n A 1 94 ILE 94 91 91 ILE ILE A . n A 1 95 LEU 95 92 92 LEU LEU A . n A 1 96 LYS 96 93 93 LYS LYS A . n A 1 97 GLU 97 94 94 GLU GLU A . n A 1 98 GLN 98 95 95 GLN GLN A . n A 1 99 GLU 99 96 96 GLU GLU A . n A 1 100 ASN 100 97 97 ASN ASN A . n A 1 101 ARG 101 98 98 ARG ARG A . n A 1 102 LYS 102 99 99 LYS LYS A . n A 1 103 GLY 103 100 100 GLY GLY A . n A 1 104 LEU 104 101 101 LEU LEU A . n A 1 105 ILE 105 102 102 ILE ILE A . n A 1 106 ALA 106 103 103 ALA ALA A . n A 1 107 ALA 107 104 104 ALA ALA A . n A 1 108 ILE 108 105 105 ILE ILE A . n A 1 109 CSD 109 106 106 CSD CSW A . n A 1 110 ALA 110 107 107 ALA ALA A . n A 1 111 GLY 111 108 108 GLY GLY A . n A 1 112 PRO 112 109 109 PRO PRO A . n A 1 113 THR 113 110 110 THR THR A . n A 1 114 ALA 114 111 111 ALA ALA A . n A 1 115 LEU 115 112 112 LEU LEU A . n A 1 116 LEU 116 113 113 LEU LEU A . n A 1 117 ALA 117 114 114 ALA ALA A . n A 1 118 HIS 118 115 115 HIS HIS A . n A 1 119 GLU 119 116 116 GLU GLU A . n A 1 120 ILE 120 117 117 ILE ILE A . n A 1 121 GLY 121 118 118 GLY GLY A . n A 1 122 PHE 122 119 119 PHE PHE A . n A 1 123 GLY 123 120 120 GLY GLY A . n A 1 124 SER 124 121 121 SER SER A . n A 1 125 LYS 125 122 122 LYS LYS A . n A 1 126 VAL 126 123 123 VAL VAL A . n A 1 127 THR 127 124 124 THR THR A . n A 1 128 THR 128 125 125 THR THR A . n A 1 129 HIS 129 126 126 HIS HIS A . n A 1 130 PRO 130 127 127 PRO PRO A . n A 1 131 LEU 131 128 128 LEU LEU A . n A 1 132 ALA 132 129 129 ALA ALA A . n A 1 133 LYS 133 130 130 LYS LYS A . n A 1 134 ASP 134 131 131 ASP ASP A . n A 1 135 LYS 135 132 132 LYS LYS A . n A 1 136 MET 136 133 133 MET MET A . n A 1 137 MET 137 134 134 MET MET A . n A 1 138 ASN 138 135 135 ASN ASN A . n A 1 139 GLY 139 136 136 GLY GLY A . n A 1 140 GLY 140 137 137 GLY GLY A . n A 1 141 HIS 141 138 138 HIS HIS A . n A 1 142 TYR 142 139 139 TYR TYR A . n A 1 143 THR 143 140 140 THR THR A . n A 1 144 TYR 144 141 141 TYR TYR A . n A 1 145 SER 145 142 142 SER SER A . n A 1 146 GLU 146 143 143 GLU GLU A . n A 1 147 ASN 147 144 144 ASN ASN A . n A 1 148 ARG 148 145 145 ARG ARG A . n A 1 149 VAL 149 146 146 VAL VAL A . n A 1 150 GLU 150 147 147 GLU GLU A . n A 1 151 LYS 151 148 148 LYS LYS A . n A 1 152 ASP 152 149 149 ASP ASP A . n A 1 153 GLY 153 150 150 GLY GLY A . n A 1 154 LEU 154 151 151 LEU LEU A . n A 1 155 ILE 155 152 152 ILE ILE A . n A 1 156 LEU 156 153 153 LEU LEU A . n A 1 157 THR 157 154 154 THR THR A . n A 1 158 SER 158 155 155 SER SER A . n A 1 159 ARG 159 156 156 ARG ARG A . n A 1 160 GLY 160 157 157 GLY GLY A . n A 1 161 PRO 161 158 158 PRO PRO A . n A 1 162 GLY 162 159 159 GLY GLY A . n A 1 163 THR 163 160 160 THR THR A . n A 1 164 SER 164 161 161 SER SER A . n A 1 165 PHE 165 162 162 PHE PHE A . n A 1 166 GLU 166 163 163 GLU GLU A . n A 1 167 PHE 167 164 164 PHE PHE A . n A 1 168 ALA 168 165 165 ALA ALA A . n A 1 169 LEU 169 166 166 LEU LEU A . n A 1 170 ALA 170 167 167 ALA ALA A . n A 1 171 ILE 171 168 168 ILE ILE A . n A 1 172 VAL 172 169 169 VAL VAL A . n A 1 173 GLU 173 170 170 GLU GLU A . n A 1 174 ALA 174 171 171 ALA ALA A . n A 1 175 LEU 175 172 172 LEU LEU A . n A 1 176 ASN 176 173 173 ASN ASN A . n A 1 177 GLY 177 174 174 GLY GLY A . n A 1 178 LYS 178 175 175 LYS LYS A . n A 1 179 GLU 179 176 176 GLU GLU A . n A 1 180 VAL 180 177 177 VAL VAL A . n A 1 181 ALA 181 178 178 ALA ALA A . n A 1 182 ALA 182 179 179 ALA ALA A . n A 1 183 GLN 183 180 180 GLN GLN A . n A 1 184 VAL 184 181 181 VAL VAL A . n A 1 185 LYS 185 182 182 LYS LYS A . n A 1 186 ALA 186 183 183 ALA ALA A . n A 1 187 PRO 187 184 184 PRO PRO A . n A 1 188 LEU 188 185 185 LEU LEU A . n A 1 189 VAL 189 186 186 VAL VAL A . n A 1 190 LEU 190 187 187 LEU LEU A . n A 1 191 LYS 191 188 188 LYS LYS A . n A 1 192 ASP 192 189 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 201 1 EDO EDO A . C 2 EDO 1 202 2 EDO EDO A . D 2 EDO 1 203 3 EDO EDO A . E 2 EDO 1 204 4 EDO EDO A . F 2 EDO 1 205 5 EDO EDO A . G 3 HOH 1 301 285 HOH HOH A . G 3 HOH 2 302 127 HOH HOH A . G 3 HOH 3 303 123 HOH HOH A . G 3 HOH 4 304 303 HOH HOH A . G 3 HOH 5 305 45 HOH HOH A . G 3 HOH 6 306 12 HOH HOH A . G 3 HOH 7 307 298 HOH HOH A . G 3 HOH 8 308 24 HOH HOH A . G 3 HOH 9 309 283 HOH HOH A . G 3 HOH 10 310 108 HOH HOH A . G 3 HOH 11 311 40 HOH HOH A . G 3 HOH 12 312 34 HOH HOH A . G 3 HOH 13 313 8 HOH HOH A . G 3 HOH 14 314 160 HOH HOH A . G 3 HOH 15 315 301 HOH HOH A . G 3 HOH 16 316 302 HOH HOH A . G 3 HOH 17 317 134 HOH HOH A . G 3 HOH 18 318 294 HOH HOH A . G 3 HOH 19 319 272 HOH HOH A . G 3 HOH 20 320 21 HOH HOH A . G 3 HOH 21 321 284 HOH HOH A . G 3 HOH 22 322 191 HOH HOH A . G 3 HOH 23 323 80 HOH HOH A . G 3 HOH 24 324 213 HOH HOH A . G 3 HOH 25 325 232 HOH HOH A . G 3 HOH 26 326 54 HOH HOH A . G 3 HOH 27 327 11 HOH HOH A . G 3 HOH 28 328 133 HOH HOH A . G 3 HOH 29 329 114 HOH HOH A . G 3 HOH 30 330 163 HOH HOH A . G 3 HOH 31 331 254 HOH HOH A . G 3 HOH 32 332 39 HOH HOH A . G 3 HOH 33 333 22 HOH HOH A . G 3 HOH 34 334 181 HOH HOH A . G 3 HOH 35 335 224 HOH HOH A . G 3 HOH 36 336 306 HOH HOH A . G 3 HOH 37 337 201 HOH HOH A . G 3 HOH 38 338 199 HOH HOH A . G 3 HOH 39 339 195 HOH HOH A . G 3 HOH 40 340 212 HOH HOH A . G 3 HOH 41 341 200 HOH HOH A . G 3 HOH 42 342 77 HOH HOH A . G 3 HOH 43 343 177 HOH HOH A . G 3 HOH 44 344 251 HOH HOH A . G 3 HOH 45 345 42 HOH HOH A . G 3 HOH 46 346 6 HOH HOH A . G 3 HOH 47 347 92 HOH HOH A . G 3 HOH 48 348 210 HOH HOH A . G 3 HOH 49 349 88 HOH HOH A . G 3 HOH 50 350 217 HOH HOH A . G 3 HOH 51 351 52 HOH HOH A . G 3 HOH 52 352 119 HOH HOH A . G 3 HOH 53 353 162 HOH HOH A . G 3 HOH 54 354 93 HOH HOH A . G 3 HOH 55 355 29 HOH HOH A . G 3 HOH 56 356 132 HOH HOH A . G 3 HOH 57 357 99 HOH HOH A . G 3 HOH 58 358 111 HOH HOH A . G 3 HOH 59 359 9 HOH HOH A . G 3 HOH 60 360 158 HOH HOH A . G 3 HOH 61 361 121 HOH HOH A . G 3 HOH 62 362 276 HOH HOH A . G 3 HOH 63 363 167 HOH HOH A . G 3 HOH 64 364 290 HOH HOH A . G 3 HOH 65 365 60 HOH HOH A . G 3 HOH 66 366 194 HOH HOH A . G 3 HOH 67 367 249 HOH HOH A . G 3 HOH 68 368 223 HOH HOH A . G 3 HOH 69 369 279 HOH HOH A . G 3 HOH 70 370 107 HOH HOH A . G 3 HOH 71 371 299 HOH HOH A . G 3 HOH 72 372 157 HOH HOH A . G 3 HOH 73 373 124 HOH HOH A . G 3 HOH 74 374 145 HOH HOH A . G 3 HOH 75 375 118 HOH HOH A . G 3 HOH 76 376 13 HOH HOH A . G 3 HOH 77 377 256 HOH HOH A . G 3 HOH 78 378 172 HOH HOH A . G 3 HOH 79 379 154 HOH HOH A . G 3 HOH 80 380 188 HOH HOH A . G 3 HOH 81 381 70 HOH HOH A . G 3 HOH 82 382 155 HOH HOH A . G 3 HOH 83 383 105 HOH HOH A . G 3 HOH 84 384 63 HOH HOH A . G 3 HOH 85 385 248 HOH HOH A . G 3 HOH 86 386 3 HOH HOH A . G 3 HOH 87 387 58 HOH HOH A . G 3 HOH 88 388 62 HOH HOH A . G 3 HOH 89 389 79 HOH HOH A . G 3 HOH 90 390 170 HOH HOH A . G 3 HOH 91 391 101 HOH HOH A . G 3 HOH 92 392 78 HOH HOH A . G 3 HOH 93 393 65 HOH HOH A . G 3 HOH 94 394 211 HOH HOH A . G 3 HOH 95 395 242 HOH HOH A . G 3 HOH 96 396 185 HOH HOH A . G 3 HOH 97 397 95 HOH HOH A . G 3 HOH 98 398 81 HOH HOH A . G 3 HOH 99 399 74 HOH HOH A . G 3 HOH 100 400 135 HOH HOH A . G 3 HOH 101 401 56 HOH HOH A . G 3 HOH 102 402 152 HOH HOH A . G 3 HOH 103 403 46 HOH HOH A . G 3 HOH 104 404 139 HOH HOH A . G 3 HOH 105 405 85 HOH HOH A . G 3 HOH 106 406 66 HOH HOH A . G 3 HOH 107 407 122 HOH HOH A . G 3 HOH 108 408 2 HOH HOH A . G 3 HOH 109 409 267 HOH HOH A . G 3 HOH 110 410 83 HOH HOH A . G 3 HOH 111 411 137 HOH HOH A . G 3 HOH 112 412 72 HOH HOH A . G 3 HOH 113 413 136 HOH HOH A . G 3 HOH 114 414 182 HOH HOH A . G 3 HOH 115 415 97 HOH HOH A . G 3 HOH 116 416 64 HOH HOH A . G 3 HOH 117 417 69 HOH HOH A . G 3 HOH 118 418 280 HOH HOH A . G 3 HOH 119 419 67 HOH HOH A . G 3 HOH 120 420 109 HOH HOH A . G 3 HOH 121 421 43 HOH HOH A . G 3 HOH 122 422 238 HOH HOH A . G 3 HOH 123 423 102 HOH HOH A . G 3 HOH 124 424 96 HOH HOH A . G 3 HOH 125 425 98 HOH HOH A . G 3 HOH 126 426 82 HOH HOH A . G 3 HOH 127 427 209 HOH HOH A . G 3 HOH 128 428 178 HOH HOH A . G 3 HOH 129 429 243 HOH HOH A . G 3 HOH 130 430 235 HOH HOH A . G 3 HOH 131 431 32 HOH HOH A . G 3 HOH 132 432 207 HOH HOH A . G 3 HOH 133 433 47 HOH HOH A . G 3 HOH 134 434 129 HOH HOH A . G 3 HOH 135 435 76 HOH HOH A . G 3 HOH 136 436 117 HOH HOH A . G 3 HOH 137 437 116 HOH HOH A . G 3 HOH 138 438 68 HOH HOH A . G 3 HOH 139 439 103 HOH HOH A . G 3 HOH 140 440 120 HOH HOH A . G 3 HOH 141 441 171 HOH HOH A . G 3 HOH 142 442 173 HOH HOH A . G 3 HOH 143 443 190 HOH HOH A . G 3 HOH 144 444 218 HOH HOH A . G 3 HOH 145 445 73 HOH HOH A . G 3 HOH 146 446 49 HOH HOH A . G 3 HOH 147 447 75 HOH HOH A . G 3 HOH 148 448 236 HOH HOH A . G 3 HOH 149 449 4 HOH HOH A . G 3 HOH 150 450 231 HOH HOH A . G 3 HOH 151 451 141 HOH HOH A . G 3 HOH 152 452 273 HOH HOH A . G 3 HOH 153 453 71 HOH HOH A . G 3 HOH 154 454 31 HOH HOH A . G 3 HOH 155 455 288 HOH HOH A . G 3 HOH 156 456 297 HOH HOH A . G 3 HOH 157 457 51 HOH HOH A . G 3 HOH 158 458 25 HOH HOH A . G 3 HOH 159 459 234 HOH HOH A . G 3 HOH 160 460 128 HOH HOH A . G 3 HOH 161 461 131 HOH HOH A . G 3 HOH 162 462 27 HOH HOH A . G 3 HOH 163 463 110 HOH HOH A . G 3 HOH 164 464 258 HOH HOH A . G 3 HOH 165 465 150 HOH HOH A . G 3 HOH 166 466 94 HOH HOH A . G 3 HOH 167 467 257 HOH HOH A . G 3 HOH 168 468 61 HOH HOH A . G 3 HOH 169 469 292 HOH HOH A . G 3 HOH 170 470 143 HOH HOH A . G 3 HOH 171 471 87 HOH HOH A . G 3 HOH 172 472 208 HOH HOH A . G 3 HOH 173 473 270 HOH HOH A . G 3 HOH 174 474 90 HOH HOH A . G 3 HOH 175 475 221 HOH HOH A . G 3 HOH 176 476 91 HOH HOH A . G 3 HOH 177 477 53 HOH HOH A . G 3 HOH 178 478 264 HOH HOH A . G 3 HOH 179 479 266 HOH HOH A . G 3 HOH 180 480 84 HOH HOH A . G 3 HOH 181 481 33 HOH HOH A . G 3 HOH 182 482 193 HOH HOH A . G 3 HOH 183 483 86 HOH HOH A . G 3 HOH 184 484 245 HOH HOH A . G 3 HOH 185 485 161 HOH HOH A . G 3 HOH 186 486 192 HOH HOH A . G 3 HOH 187 487 125 HOH HOH A . G 3 HOH 188 488 142 HOH HOH A . G 3 HOH 189 489 278 HOH HOH A . G 3 HOH 190 490 16 HOH HOH A . G 3 HOH 191 491 196 HOH HOH A . G 3 HOH 192 492 220 HOH HOH A . G 3 HOH 193 493 89 HOH HOH A . G 3 HOH 194 494 174 HOH HOH A . G 3 HOH 195 495 260 HOH HOH A . G 3 HOH 196 496 226 HOH HOH A . G 3 HOH 197 497 28 HOH HOH A . G 3 HOH 198 498 175 HOH HOH A . G 3 HOH 199 499 20 HOH HOH A . G 3 HOH 200 500 241 HOH HOH A . G 3 HOH 201 501 146 HOH HOH A . G 3 HOH 202 502 308 HOH HOH A . G 3 HOH 203 503 180 HOH HOH A . G 3 HOH 204 504 38 HOH HOH A . G 3 HOH 205 505 23 HOH HOH A . G 3 HOH 206 506 222 HOH HOH A . G 3 HOH 207 507 307 HOH HOH A . G 3 HOH 208 508 144 HOH HOH A . G 3 HOH 209 509 250 HOH HOH A . G 3 HOH 210 510 153 HOH HOH A . G 3 HOH 211 511 216 HOH HOH A . G 3 HOH 212 512 274 HOH HOH A . G 3 HOH 213 513 253 HOH HOH A . G 3 HOH 214 514 189 HOH HOH A . G 3 HOH 215 515 277 HOH HOH A . G 3 HOH 216 516 168 HOH HOH A . G 3 HOH 217 517 287 HOH HOH A . G 3 HOH 218 518 275 HOH HOH A . G 3 HOH 219 519 10 HOH HOH A . G 3 HOH 220 520 37 HOH HOH A . G 3 HOH 221 521 271 HOH HOH A . G 3 HOH 222 522 36 HOH HOH A . G 3 HOH 223 523 291 HOH HOH A . G 3 HOH 224 524 247 HOH HOH A . G 3 HOH 225 525 246 HOH HOH A . G 3 HOH 226 526 269 HOH HOH A . G 3 HOH 227 527 30 HOH HOH A . G 3 HOH 228 528 225 HOH HOH A . G 3 HOH 229 529 286 HOH HOH A . G 3 HOH 230 530 244 HOH HOH A . G 3 HOH 231 531 57 HOH HOH A . G 3 HOH 232 532 239 HOH HOH A . G 3 HOH 233 533 281 HOH HOH A . G 3 HOH 234 534 252 HOH HOH A . G 3 HOH 235 535 293 HOH HOH A . G 3 HOH 236 536 48 HOH HOH A . G 3 HOH 237 537 205 HOH HOH A . G 3 HOH 238 538 59 HOH HOH A . G 3 HOH 239 539 261 HOH HOH A . G 3 HOH 240 540 255 HOH HOH A . G 3 HOH 241 541 130 HOH HOH A . G 3 HOH 242 542 166 HOH HOH A . G 3 HOH 243 543 183 HOH HOH A . G 3 HOH 244 544 187 HOH HOH A . G 3 HOH 245 545 104 HOH HOH A . G 3 HOH 246 546 5 HOH HOH A . G 3 HOH 247 547 219 HOH HOH A . G 3 HOH 248 548 206 HOH HOH A . G 3 HOH 249 549 176 HOH HOH A . G 3 HOH 250 550 265 HOH HOH A . G 3 HOH 251 551 159 HOH HOH A . G 3 HOH 252 552 151 HOH HOH A . G 3 HOH 253 553 215 HOH HOH A . G 3 HOH 254 554 138 HOH HOH A . G 3 HOH 255 555 184 HOH HOH A . G 3 HOH 256 556 147 HOH HOH A . G 3 HOH 257 557 202 HOH HOH A . G 3 HOH 258 558 50 HOH HOH A . G 3 HOH 259 559 300 HOH HOH A . G 3 HOH 260 560 44 HOH HOH A . G 3 HOH 261 561 140 HOH HOH A . G 3 HOH 262 562 186 HOH HOH A . G 3 HOH 263 563 100 HOH HOH A . G 3 HOH 264 564 203 HOH HOH A . G 3 HOH 265 565 204 HOH HOH A . G 3 HOH 266 566 165 HOH HOH A . G 3 HOH 267 567 41 HOH HOH A . G 3 HOH 268 568 106 HOH HOH A . G 3 HOH 269 569 7 HOH HOH A . G 3 HOH 270 570 228 HOH HOH A . G 3 HOH 271 571 113 HOH HOH A . G 3 HOH 272 572 197 HOH HOH A . G 3 HOH 273 573 14 HOH HOH A . G 3 HOH 274 574 126 HOH HOH A . G 3 HOH 275 575 55 HOH HOH A . G 3 HOH 276 576 19 HOH HOH A . G 3 HOH 277 577 169 HOH HOH A . G 3 HOH 278 578 295 HOH HOH A . G 3 HOH 279 579 115 HOH HOH A . G 3 HOH 280 580 296 HOH HOH A . G 3 HOH 281 581 268 HOH HOH A . G 3 HOH 282 582 1 HOH HOH A . G 3 HOH 283 583 198 HOH HOH A . G 3 HOH 284 584 233 HOH HOH A . G 3 HOH 285 585 149 HOH HOH A . G 3 HOH 286 586 237 HOH HOH A . G 3 HOH 287 587 263 HOH HOH A . G 3 HOH 288 588 148 HOH HOH A . G 3 HOH 289 589 305 HOH HOH A . G 3 HOH 290 590 112 HOH HOH A . G 3 HOH 291 591 18 HOH HOH A . G 3 HOH 292 592 156 HOH HOH A . G 3 HOH 293 593 164 HOH HOH A . G 3 HOH 294 594 262 HOH HOH A . G 3 HOH 295 595 214 HOH HOH A . G 3 HOH 296 596 17 HOH HOH A . G 3 HOH 297 597 179 HOH HOH A . G 3 HOH 298 598 227 HOH HOH A . G 3 HOH 299 599 259 HOH HOH A . G 3 HOH 300 600 15 HOH HOH A . G 3 HOH 301 601 26 HOH HOH A . G 3 HOH 302 602 35 HOH HOH A . G 3 HOH 303 603 282 HOH HOH A . G 3 HOH 304 604 240 HOH HOH A . G 3 HOH 305 605 230 HOH HOH A . G 3 HOH 306 606 304 HOH HOH A . G 3 HOH 307 607 289 HOH HOH A . G 3 HOH 308 608 229 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CSD _pdbx_struct_mod_residue.label_seq_id 109 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id CSD _pdbx_struct_mod_residue.auth_seq_id 106 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4600 ? 1 MORE 16 ? 1 'SSA (A^2)' 15440 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -21.7560000000 # _pdbx_point_symmetry.entry_id 5SY9 _pdbx_point_symmetry.Schoenflies_symbol C _pdbx_point_symmetry.circular_symmetry 2 _pdbx_point_symmetry.H-M_notation ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-28 2 'Structure model' 1 1 2017-01-04 3 'Structure model' 1 2 2017-02-01 4 'Structure model' 1 3 2017-09-13 5 'Structure model' 1 4 2019-12-25 6 'Structure model' 1 5 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 5 'Structure model' 'Author supporting evidence' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_audit_support 2 5 'Structure model' pdbx_audit_support 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 6 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_audit_support.funding_organization' 2 5 'Structure model' '_pdbx_audit_support.funding_organization' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0151 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 526 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 589 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 530 ? ? 1_555 O A HOH 530 ? ? 3_554 1.91 2 1 O A HOH 518 ? ? 1_555 O A HOH 518 ? ? 3_554 1.94 3 1 CG2 A THR 140 ? B 1_555 O A HOH 506 ? ? 6_445 2.14 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CD _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LYS _pdbx_validate_rmsd_angle.auth_seq_id_1 89 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 A _pdbx_validate_rmsd_angle.auth_atom_id_2 CE _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LYS _pdbx_validate_rmsd_angle.auth_seq_id_2 89 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 A _pdbx_validate_rmsd_angle.auth_atom_id_3 NZ _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LYS _pdbx_validate_rmsd_angle.auth_seq_id_3 89 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 A _pdbx_validate_rmsd_angle.angle_value 138.81 _pdbx_validate_rmsd_angle.angle_target_value 111.70 _pdbx_validate_rmsd_angle.angle_deviation 27.11 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id CSD _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 106 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 73.19 _pdbx_validate_torsion.psi -106.22 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 605 ? 6.04 . 2 1 O ? A HOH 606 ? 6.51 . 3 1 O ? A HOH 607 ? . 6.87 4 1 O ? A HOH 608 ? 6.91 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 A ASP 189 ? A ASP 192 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CSD N N N N 74 CSD CA C N R 75 CSD CB C N N 76 CSD SG S N N 77 CSD C C N N 78 CSD O O N N 79 CSD OXT O N N 80 CSD OD1 O N N 81 CSD OD2 O N N 82 CSD H H N N 83 CSD H2 H N N 84 CSD HA H N N 85 CSD HB2 H N N 86 CSD HB3 H N N 87 CSD HXT H N N 88 CSD HD2 H N N 89 CYS N N N N 90 CYS CA C N R 91 CYS C C N N 92 CYS O O N N 93 CYS CB C N N 94 CYS SG S N N 95 CYS OXT O N N 96 CYS H H N N 97 CYS H2 H N N 98 CYS HA H N N 99 CYS HB2 H N N 100 CYS HB3 H N N 101 CYS HG H N N 102 CYS HXT H N N 103 EDO C1 C N N 104 EDO O1 O N N 105 EDO C2 C N N 106 EDO O2 O N N 107 EDO H11 H N N 108 EDO H12 H N N 109 EDO HO1 H N N 110 EDO H21 H N N 111 EDO H22 H N N 112 EDO HO2 H N N 113 GLN N N N N 114 GLN CA C N S 115 GLN C C N N 116 GLN O O N N 117 GLN CB C N N 118 GLN CG C N N 119 GLN CD C N N 120 GLN OE1 O N N 121 GLN NE2 N N N 122 GLN OXT O N N 123 GLN H H N N 124 GLN H2 H N N 125 GLN HA H N N 126 GLN HB2 H N N 127 GLN HB3 H N N 128 GLN HG2 H N N 129 GLN HG3 H N N 130 GLN HE21 H N N 131 GLN HE22 H N N 132 GLN HXT H N N 133 GLU N N N N 134 GLU CA C N S 135 GLU C C N N 136 GLU O O N N 137 GLU CB C N N 138 GLU CG C N N 139 GLU CD C N N 140 GLU OE1 O N N 141 GLU OE2 O N N 142 GLU OXT O N N 143 GLU H H N N 144 GLU H2 H N N 145 GLU HA H N N 146 GLU HB2 H N N 147 GLU HB3 H N N 148 GLU HG2 H N N 149 GLU HG3 H N N 150 GLU HE2 H N N 151 GLU HXT H N N 152 GLY N N N N 153 GLY CA C N N 154 GLY C C N N 155 GLY O O N N 156 GLY OXT O N N 157 GLY H H N N 158 GLY H2 H N N 159 GLY HA2 H N N 160 GLY HA3 H N N 161 GLY HXT H N N 162 HIS N N N N 163 HIS CA C N S 164 HIS C C N N 165 HIS O O N N 166 HIS CB C N N 167 HIS CG C Y N 168 HIS ND1 N Y N 169 HIS CD2 C Y N 170 HIS CE1 C Y N 171 HIS NE2 N Y N 172 HIS OXT O N N 173 HIS H H N N 174 HIS H2 H N N 175 HIS HA H N N 176 HIS HB2 H N N 177 HIS HB3 H N N 178 HIS HD1 H N N 179 HIS HD2 H N N 180 HIS HE1 H N N 181 HIS HE2 H N N 182 HIS HXT H N N 183 HOH O O N N 184 HOH H1 H N N 185 HOH H2 H N N 186 ILE N N N N 187 ILE CA C N S 188 ILE C C N N 189 ILE O O N N 190 ILE CB C N S 191 ILE CG1 C N N 192 ILE CG2 C N N 193 ILE CD1 C N N 194 ILE OXT O N N 195 ILE H H N N 196 ILE H2 H N N 197 ILE HA H N N 198 ILE HB H N N 199 ILE HG12 H N N 200 ILE HG13 H N N 201 ILE HG21 H N N 202 ILE HG22 H N N 203 ILE HG23 H N N 204 ILE HD11 H N N 205 ILE HD12 H N N 206 ILE HD13 H N N 207 ILE HXT H N N 208 LEU N N N N 209 LEU CA C N S 210 LEU C C N N 211 LEU O O N N 212 LEU CB C N N 213 LEU CG C N N 214 LEU CD1 C N N 215 LEU CD2 C N N 216 LEU OXT O N N 217 LEU H H N N 218 LEU H2 H N N 219 LEU HA H N N 220 LEU HB2 H N N 221 LEU HB3 H N N 222 LEU HG H N N 223 LEU HD11 H N N 224 LEU HD12 H N N 225 LEU HD13 H N N 226 LEU HD21 H N N 227 LEU HD22 H N N 228 LEU HD23 H N N 229 LEU HXT H N N 230 LYS N N N N 231 LYS CA C N S 232 LYS C C N N 233 LYS O O N N 234 LYS CB C N N 235 LYS CG C N N 236 LYS CD C N N 237 LYS CE C N N 238 LYS NZ N N N 239 LYS OXT O N N 240 LYS H H N N 241 LYS H2 H N N 242 LYS HA H N N 243 LYS HB2 H N N 244 LYS HB3 H N N 245 LYS HG2 H N N 246 LYS HG3 H N N 247 LYS HD2 H N N 248 LYS HD3 H N N 249 LYS HE2 H N N 250 LYS HE3 H N N 251 LYS HZ1 H N N 252 LYS HZ2 H N N 253 LYS HZ3 H N N 254 LYS HXT H N N 255 MET N N N N 256 MET CA C N S 257 MET C C N N 258 MET O O N N 259 MET CB C N N 260 MET CG C N N 261 MET SD S N N 262 MET CE C N N 263 MET OXT O N N 264 MET H H N N 265 MET H2 H N N 266 MET HA H N N 267 MET HB2 H N N 268 MET HB3 H N N 269 MET HG2 H N N 270 MET HG3 H N N 271 MET HE1 H N N 272 MET HE2 H N N 273 MET HE3 H N N 274 MET HXT H N N 275 PHE N N N N 276 PHE CA C N S 277 PHE C C N N 278 PHE O O N N 279 PHE CB C N N 280 PHE CG C Y N 281 PHE CD1 C Y N 282 PHE CD2 C Y N 283 PHE CE1 C Y N 284 PHE CE2 C Y N 285 PHE CZ C Y N 286 PHE OXT O N N 287 PHE H H N N 288 PHE H2 H N N 289 PHE HA H N N 290 PHE HB2 H N N 291 PHE HB3 H N N 292 PHE HD1 H N N 293 PHE HD2 H N N 294 PHE HE1 H N N 295 PHE HE2 H N N 296 PHE HZ H N N 297 PHE HXT H N N 298 PRO N N N N 299 PRO CA C N S 300 PRO C C N N 301 PRO O O N N 302 PRO CB C N N 303 PRO CG C N N 304 PRO CD C N N 305 PRO OXT O N N 306 PRO H H N N 307 PRO HA H N N 308 PRO HB2 H N N 309 PRO HB3 H N N 310 PRO HG2 H N N 311 PRO HG3 H N N 312 PRO HD2 H N N 313 PRO HD3 H N N 314 PRO HXT H N N 315 SER N N N N 316 SER CA C N S 317 SER C C N N 318 SER O O N N 319 SER CB C N N 320 SER OG O N N 321 SER OXT O N N 322 SER H H N N 323 SER H2 H N N 324 SER HA H N N 325 SER HB2 H N N 326 SER HB3 H N N 327 SER HG H N N 328 SER HXT H N N 329 THR N N N N 330 THR CA C N S 331 THR C C N N 332 THR O O N N 333 THR CB C N R 334 THR OG1 O N N 335 THR CG2 C N N 336 THR OXT O N N 337 THR H H N N 338 THR H2 H N N 339 THR HA H N N 340 THR HB H N N 341 THR HG1 H N N 342 THR HG21 H N N 343 THR HG22 H N N 344 THR HG23 H N N 345 THR HXT H N N 346 TYR N N N N 347 TYR CA C N S 348 TYR C C N N 349 TYR O O N N 350 TYR CB C N N 351 TYR CG C Y N 352 TYR CD1 C Y N 353 TYR CD2 C Y N 354 TYR CE1 C Y N 355 TYR CE2 C Y N 356 TYR CZ C Y N 357 TYR OH O N N 358 TYR OXT O N N 359 TYR H H N N 360 TYR H2 H N N 361 TYR HA H N N 362 TYR HB2 H N N 363 TYR HB3 H N N 364 TYR HD1 H N N 365 TYR HD2 H N N 366 TYR HE1 H N N 367 TYR HE2 H N N 368 TYR HH H N N 369 TYR HXT H N N 370 VAL N N N N 371 VAL CA C N S 372 VAL C C N N 373 VAL O O N N 374 VAL CB C N N 375 VAL CG1 C N N 376 VAL CG2 C N N 377 VAL OXT O N N 378 VAL H H N N 379 VAL H2 H N N 380 VAL HA H N N 381 VAL HB H N N 382 VAL HG11 H N N 383 VAL HG12 H N N 384 VAL HG13 H N N 385 VAL HG21 H N N 386 VAL HG22 H N N 387 VAL HG23 H N N 388 VAL HXT H N N 389 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CSD N CA sing N N 70 CSD N H sing N N 71 CSD N H2 sing N N 72 CSD CA CB sing N N 73 CSD CA C sing N N 74 CSD CA HA sing N N 75 CSD CB SG sing N N 76 CSD CB HB2 sing N N 77 CSD CB HB3 sing N N 78 CSD SG OD1 doub N N 79 CSD SG OD2 sing N N 80 CSD C O doub N N 81 CSD C OXT sing N N 82 CSD OXT HXT sing N N 83 CSD OD2 HD2 sing N N 84 CYS N CA sing N N 85 CYS N H sing N N 86 CYS N H2 sing N N 87 CYS CA C sing N N 88 CYS CA CB sing N N 89 CYS CA HA sing N N 90 CYS C O doub N N 91 CYS C OXT sing N N 92 CYS CB SG sing N N 93 CYS CB HB2 sing N N 94 CYS CB HB3 sing N N 95 CYS SG HG sing N N 96 CYS OXT HXT sing N N 97 EDO C1 O1 sing N N 98 EDO C1 C2 sing N N 99 EDO C1 H11 sing N N 100 EDO C1 H12 sing N N 101 EDO O1 HO1 sing N N 102 EDO C2 O2 sing N N 103 EDO C2 H21 sing N N 104 EDO C2 H22 sing N N 105 EDO O2 HO2 sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LEU N CA sing N N 197 LEU N H sing N N 198 LEU N H2 sing N N 199 LEU CA C sing N N 200 LEU CA CB sing N N 201 LEU CA HA sing N N 202 LEU C O doub N N 203 LEU C OXT sing N N 204 LEU CB CG sing N N 205 LEU CB HB2 sing N N 206 LEU CB HB3 sing N N 207 LEU CG CD1 sing N N 208 LEU CG CD2 sing N N 209 LEU CG HG sing N N 210 LEU CD1 HD11 sing N N 211 LEU CD1 HD12 sing N N 212 LEU CD1 HD13 sing N N 213 LEU CD2 HD21 sing N N 214 LEU CD2 HD22 sing N N 215 LEU CD2 HD23 sing N N 216 LEU OXT HXT sing N N 217 LYS N CA sing N N 218 LYS N H sing N N 219 LYS N H2 sing N N 220 LYS CA C sing N N 221 LYS CA CB sing N N 222 LYS CA HA sing N N 223 LYS C O doub N N 224 LYS C OXT sing N N 225 LYS CB CG sing N N 226 LYS CB HB2 sing N N 227 LYS CB HB3 sing N N 228 LYS CG CD sing N N 229 LYS CG HG2 sing N N 230 LYS CG HG3 sing N N 231 LYS CD CE sing N N 232 LYS CD HD2 sing N N 233 LYS CD HD3 sing N N 234 LYS CE NZ sing N N 235 LYS CE HE2 sing N N 236 LYS CE HE3 sing N N 237 LYS NZ HZ1 sing N N 238 LYS NZ HZ2 sing N N 239 LYS NZ HZ3 sing N N 240 LYS OXT HXT sing N N 241 MET N CA sing N N 242 MET N H sing N N 243 MET N H2 sing N N 244 MET CA C sing N N 245 MET CA CB sing N N 246 MET CA HA sing N N 247 MET C O doub N N 248 MET C OXT sing N N 249 MET CB CG sing N N 250 MET CB HB2 sing N N 251 MET CB HB3 sing N N 252 MET CG SD sing N N 253 MET CG HG2 sing N N 254 MET CG HG3 sing N N 255 MET SD CE sing N N 256 MET CE HE1 sing N N 257 MET CE HE2 sing N N 258 MET CE HE3 sing N N 259 MET OXT HXT sing N N 260 PHE N CA sing N N 261 PHE N H sing N N 262 PHE N H2 sing N N 263 PHE CA C sing N N 264 PHE CA CB sing N N 265 PHE CA HA sing N N 266 PHE C O doub N N 267 PHE C OXT sing N N 268 PHE CB CG sing N N 269 PHE CB HB2 sing N N 270 PHE CB HB3 sing N N 271 PHE CG CD1 doub Y N 272 PHE CG CD2 sing Y N 273 PHE CD1 CE1 sing Y N 274 PHE CD1 HD1 sing N N 275 PHE CD2 CE2 doub Y N 276 PHE CD2 HD2 sing N N 277 PHE CE1 CZ doub Y N 278 PHE CE1 HE1 sing N N 279 PHE CE2 CZ sing Y N 280 PHE CE2 HE2 sing N N 281 PHE CZ HZ sing N N 282 PHE OXT HXT sing N N 283 PRO N CA sing N N 284 PRO N CD sing N N 285 PRO N H sing N N 286 PRO CA C sing N N 287 PRO CA CB sing N N 288 PRO CA HA sing N N 289 PRO C O doub N N 290 PRO C OXT sing N N 291 PRO CB CG sing N N 292 PRO CB HB2 sing N N 293 PRO CB HB3 sing N N 294 PRO CG CD sing N N 295 PRO CG HG2 sing N N 296 PRO CG HG3 sing N N 297 PRO CD HD2 sing N N 298 PRO CD HD3 sing N N 299 PRO OXT HXT sing N N 300 SER N CA sing N N 301 SER N H sing N N 302 SER N H2 sing N N 303 SER CA C sing N N 304 SER CA CB sing N N 305 SER CA HA sing N N 306 SER C O doub N N 307 SER C OXT sing N N 308 SER CB OG sing N N 309 SER CB HB2 sing N N 310 SER CB HB3 sing N N 311 SER OG HG sing N N 312 SER OXT HXT sing N N 313 THR N CA sing N N 314 THR N H sing N N 315 THR N H2 sing N N 316 THR CA C sing N N 317 THR CA CB sing N N 318 THR CA HA sing N N 319 THR C O doub N N 320 THR C OXT sing N N 321 THR CB OG1 sing N N 322 THR CB CG2 sing N N 323 THR CB HB sing N N 324 THR OG1 HG1 sing N N 325 THR CG2 HG21 sing N N 326 THR CG2 HG22 sing N N 327 THR CG2 HG23 sing N N 328 THR OXT HXT sing N N 329 TYR N CA sing N N 330 TYR N H sing N N 331 TYR N H2 sing N N 332 TYR CA C sing N N 333 TYR CA CB sing N N 334 TYR CA HA sing N N 335 TYR C O doub N N 336 TYR C OXT sing N N 337 TYR CB CG sing N N 338 TYR CB HB2 sing N N 339 TYR CB HB3 sing N N 340 TYR CG CD1 doub Y N 341 TYR CG CD2 sing Y N 342 TYR CD1 CE1 sing Y N 343 TYR CD1 HD1 sing N N 344 TYR CD2 CE2 doub Y N 345 TYR CD2 HD2 sing N N 346 TYR CE1 CZ doub Y N 347 TYR CE1 HE1 sing N N 348 TYR CE2 CZ sing Y N 349 TYR CE2 HE2 sing N N 350 TYR CZ OH sing N N 351 TYR OH HH sing N N 352 TYR OXT HXT sing N N 353 VAL N CA sing N N 354 VAL N H sing N N 355 VAL N H2 sing N N 356 VAL CA C sing N N 357 VAL CA CB sing N N 358 VAL CA HA sing N N 359 VAL C O doub N N 360 VAL C OXT sing N N 361 VAL CB CG1 sing N N 362 VAL CB CG2 sing N N 363 VAL CB HB sing N N 364 VAL CG1 HG11 sing N N 365 VAL CG1 HG12 sing N N 366 VAL CG1 HG13 sing N N 367 VAL CG2 HG21 sing N N 368 VAL CG2 HG22 sing N N 369 VAL CG2 HG23 sing N N 370 VAL OXT HXT sing N N 371 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM092999 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1P5F _pdbx_initial_refinement_model.details ? #