HEADER HYDROLASE/HYDROLASE INHIBITOR 11-AUG-16 5SYM TITLE COCRYSTAL STRUCTURE OF THE HUMAN ACYL PROTEIN THIOESTERASE 1 WITH AN TITLE 2 ISOFORM-SELECTIVE INHIBITOR, ML348 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-PROTEIN THIOESTERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HAPT1,LYSOPHOSPHOLIPASE 1,LYSOPHOSPHOLIPASE I,LYSOPLA I; COMPND 5 EC: 3.1.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LYPLA1, APT1, LPL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, INHIBITOR, THIOESTERASE, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.STUCKEY,K.J.LABBY,J.L.MEAGHER,S.J.WON,B.R.MARTIN REVDAT 6 04-OCT-23 5SYM 1 REMARK REVDAT 5 04-DEC-19 5SYM 1 REMARK REVDAT 4 20-SEP-17 5SYM 1 REMARK REVDAT 3 28-DEC-16 5SYM 1 JRNL REVDAT 2 09-NOV-16 5SYM 1 JRNL REVDAT 1 26-OCT-16 5SYM 0 JRNL AUTH S.J.WON,D.DAVDA,K.J.LABBY,S.Y.HWANG,R.PRICER,J.D.MAJMUDAR, JRNL AUTH 2 K.A.ARMACOST,L.A.RODRIGUEZ,C.L.RODRIGUEZ,F.S.CHONG, JRNL AUTH 3 K.A.TOROSSIAN,J.PALAKURTHI,E.S.HUR,J.L.MEAGHER,C.L.BROOKS, JRNL AUTH 4 J.A.STUCKEY,B.R.MARTIN JRNL TITL MOLECULAR MECHANISM FOR ISOFORM-SELECTIVE INHIBITION OF ACYL JRNL TITL 2 PROTEIN THIOESTERASES 1 AND 2 (APT1 AND APT2). JRNL REF ACS CHEM. BIOL. V. 11 3374 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 27748579 JRNL DOI 10.1021/ACSCHEMBIO.6B00720 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 63533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3167 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4621 REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4411 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.54 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 210 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 363 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.99180 REMARK 3 B22 (A**2) : 1.03250 REMARK 3 B33 (A**2) : 0.95930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.190 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.082 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.078 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.093 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.076 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7082 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 12882 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1963 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 80 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1085 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7082 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 482 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7945 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.75 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.52 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|8 - 82} REMARK 3 ORIGIN FOR THE GROUP (A): -16.2310 -25.6110 -10.7310 REMARK 3 T TENSOR REMARK 3 T11: -0.0488 T22: -0.0244 REMARK 3 T33: -0.0310 T12: -0.0094 REMARK 3 T13: -0.0057 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.6627 L22: 0.6237 REMARK 3 L33: 3.2617 L12: 0.3059 REMARK 3 L13: 1.0604 L23: 0.8732 REMARK 3 S TENSOR REMARK 3 S11: 0.0790 S12: -0.0593 S13: -0.1133 REMARK 3 S21: 0.0287 S22: 0.0457 S23: -0.0060 REMARK 3 S31: 0.2033 S32: -0.1073 S33: -0.1247 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|83 - 106} REMARK 3 ORIGIN FOR THE GROUP (A): -3.5634 -26.5602 -12.8091 REMARK 3 T TENSOR REMARK 3 T11: -0.0696 T22: -0.0216 REMARK 3 T33: -0.0167 T12: 0.0180 REMARK 3 T13: -0.0233 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.6986 L22: 0.6272 REMARK 3 L33: 2.4997 L12: -0.6992 REMARK 3 L13: -0.5291 L23: -0.3465 REMARK 3 S TENSOR REMARK 3 S11: 0.0425 S12: -0.0936 S13: -0.2358 REMARK 3 S21: 0.0150 S22: 0.0429 S23: 0.0322 REMARK 3 S31: 0.2337 S32: 0.2395 S33: -0.0855 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|107 - 218} REMARK 3 ORIGIN FOR THE GROUP (A): -11.4076 -13.2519 -16.7087 REMARK 3 T TENSOR REMARK 3 T11: -0.0454 T22: -0.0400 REMARK 3 T33: -0.0421 T12: -0.0169 REMARK 3 T13: -0.0036 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.8668 L22: 1.0220 REMARK 3 L33: 0.9695 L12: -0.0558 REMARK 3 L13: 0.0705 L23: -0.0495 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.0029 S13: 0.0552 REMARK 3 S21: 0.0253 S22: 0.0038 S23: -0.0366 REMARK 3 S31: -0.1767 S32: 0.0175 S33: -0.0255 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|219 - 230} REMARK 3 ORIGIN FOR THE GROUP (A): -18.4517 -20.0982 -30.5072 REMARK 3 T TENSOR REMARK 3 T11: -0.0265 T22: -0.0012 REMARK 3 T33: -0.0056 T12: -0.0195 REMARK 3 T13: -0.0091 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 0.0989 L22: 0.2865 REMARK 3 L33: 1.3361 L12: -1.4681 REMARK 3 L13: 1.2269 L23: -1.3653 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: 0.0798 S13: 0.0224 REMARK 3 S21: -0.1045 S22: 0.0233 S23: 0.0402 REMARK 3 S31: 0.0431 S32: -0.0689 S33: -0.0286 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {B|8 - 19} REMARK 3 ORIGIN FOR THE GROUP (A): -25.1258 -33.6258 26.2076 REMARK 3 T TENSOR REMARK 3 T11: 0.0124 T22: 0.0344 REMARK 3 T33: -0.0365 T12: 0.0209 REMARK 3 T13: 0.0173 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.5382 L22: 1.0898 REMARK 3 L33: 0.6609 L12: 1.0910 REMARK 3 L13: 0.0438 L23: -0.4527 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: -0.0497 S13: -0.0537 REMARK 3 S21: -0.0047 S22: 0.0955 S23: 0.0813 REMARK 3 S31: 0.0969 S32: 0.0212 S33: -0.0408 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {B|20 - 153} REMARK 3 ORIGIN FOR THE GROUP (A): -26.9115 -19.1052 18.1021 REMARK 3 T TENSOR REMARK 3 T11: -0.0932 T22: -0.0012 REMARK 3 T33: -0.0394 T12: 0.0001 REMARK 3 T13: 0.0109 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 0.2033 L22: 0.6395 REMARK 3 L33: 1.8293 L12: 0.0090 REMARK 3 L13: -0.1884 L23: -0.5155 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.0485 S13: 0.0378 REMARK 3 S21: 0.0084 S22: 0.1083 S23: 0.0774 REMARK 3 S31: -0.0547 S32: -0.1476 S33: -0.1049 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {B|154 - 163} REMARK 3 ORIGIN FOR THE GROUP (A): -33.1449 -4.2839 29.0024 REMARK 3 T TENSOR REMARK 3 T11: -0.0117 T22: 0.0061 REMARK 3 T33: 0.0682 T12: 0.0769 REMARK 3 T13: 0.1129 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 0.4550 L22: 0.8222 REMARK 3 L33: 0.2281 L12: -1.0637 REMARK 3 L13: 0.6488 L23: 0.9862 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.0106 S13: 0.0321 REMARK 3 S21: -0.0139 S22: 0.0145 S23: 0.0468 REMARK 3 S31: -0.0777 S32: 0.0008 S33: -0.0179 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {B|164 - 230} REMARK 3 ORIGIN FOR THE GROUP (A): -16.5144 -11.1907 24.0500 REMARK 3 T TENSOR REMARK 3 T11: -0.0528 T22: -0.0267 REMARK 3 T33: -0.0385 T12: -0.0162 REMARK 3 T13: 0.0191 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.0363 L22: 1.1202 REMARK 3 L33: 1.3511 L12: 0.2214 REMARK 3 L13: -0.7133 L23: -0.8454 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: -0.0390 S13: 0.1818 REMARK 3 S21: 0.1320 S22: -0.0038 S23: 0.0143 REMARK 3 S31: -0.2476 S32: 0.0812 S33: -0.0945 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000222850. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63533 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 43.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: APT1-CHAINA, PDB:1FJ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 22-24% PEG 3350, REMARK 280 200 MM MGCL2, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.91000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 CYS A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 MET A 6 REMARK 465 SER A 7 REMARK 465 MET B 1 REMARK 465 CYS B 2 REMARK 465 GLY B 3 REMARK 465 ASN B 4 REMARK 465 ASN B 5 REMARK 465 MET B 6 REMARK 465 SER B 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 8 OG1 CG2 REMARK 470 LEU A 10 CG CD1 CD2 REMARK 470 ASP B 230 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H GLN A 212 OD2 ASP B 101 4444 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 19 118.65 -31.97 REMARK 500 ASN A 64 59.55 -118.07 REMARK 500 SER A 119 -124.39 55.21 REMARK 500 MET A 207 -145.06 -101.58 REMARK 500 ASN B 64 58.73 -116.73 REMARK 500 SER B 119 -119.46 54.36 REMARK 500 MET B 207 -146.04 -101.75 REMARK 500 SER B 209 -163.04 -160.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 588 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 589 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 573 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 574 DISTANCE = 6.36 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 71Q A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 71Q B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SYN RELATED DB: PDB DBREF 5SYM A 1 230 UNP O75608 LYPA1_HUMAN 1 230 DBREF 5SYM B 1 230 UNP O75608 LYPA1_HUMAN 1 230 SEQRES 1 A 230 MET CYS GLY ASN ASN MET SER THR PRO LEU PRO ALA ILE SEQRES 2 A 230 VAL PRO ALA ALA ARG LYS ALA THR ALA ALA VAL ILE PHE SEQRES 3 A 230 LEU HIS GLY LEU GLY ASP THR GLY HIS GLY TRP ALA GLU SEQRES 4 A 230 ALA PHE ALA GLY ILE ARG SER SER HIS ILE LYS TYR ILE SEQRES 5 A 230 CYS PRO HIS ALA PRO VAL ARG PRO VAL THR LEU ASN MET SEQRES 6 A 230 ASN VAL ALA MET PRO SER TRP PHE ASP ILE ILE GLY LEU SEQRES 7 A 230 SER PRO ASP SER GLN GLU ASP GLU SER GLY ILE LYS GLN SEQRES 8 A 230 ALA ALA GLU ASN ILE LYS ALA LEU ILE ASP GLN GLU VAL SEQRES 9 A 230 LYS ASN GLY ILE PRO SER ASN ARG ILE ILE LEU GLY GLY SEQRES 10 A 230 PHE SER GLN GLY GLY ALA LEU SER LEU TYR THR ALA LEU SEQRES 11 A 230 THR THR GLN GLN LYS LEU ALA GLY VAL THR ALA LEU SER SEQRES 12 A 230 CYS TRP LEU PRO LEU ARG ALA SER PHE PRO GLN GLY PRO SEQRES 13 A 230 ILE GLY GLY ALA ASN ARG ASP ILE SER ILE LEU GLN CYS SEQRES 14 A 230 HIS GLY ASP CYS ASP PRO LEU VAL PRO LEU MET PHE GLY SEQRES 15 A 230 SER LEU THR VAL GLU LYS LEU LYS THR LEU VAL ASN PRO SEQRES 16 A 230 ALA ASN VAL THR PHE LYS THR TYR GLU GLY MET MET HIS SEQRES 17 A 230 SER SER CYS GLN GLN GLU MET MET ASP VAL LYS GLN PHE SEQRES 18 A 230 ILE ASP LYS LEU LEU PRO PRO ILE ASP SEQRES 1 B 230 MET CYS GLY ASN ASN MET SER THR PRO LEU PRO ALA ILE SEQRES 2 B 230 VAL PRO ALA ALA ARG LYS ALA THR ALA ALA VAL ILE PHE SEQRES 3 B 230 LEU HIS GLY LEU GLY ASP THR GLY HIS GLY TRP ALA GLU SEQRES 4 B 230 ALA PHE ALA GLY ILE ARG SER SER HIS ILE LYS TYR ILE SEQRES 5 B 230 CYS PRO HIS ALA PRO VAL ARG PRO VAL THR LEU ASN MET SEQRES 6 B 230 ASN VAL ALA MET PRO SER TRP PHE ASP ILE ILE GLY LEU SEQRES 7 B 230 SER PRO ASP SER GLN GLU ASP GLU SER GLY ILE LYS GLN SEQRES 8 B 230 ALA ALA GLU ASN ILE LYS ALA LEU ILE ASP GLN GLU VAL SEQRES 9 B 230 LYS ASN GLY ILE PRO SER ASN ARG ILE ILE LEU GLY GLY SEQRES 10 B 230 PHE SER GLN GLY GLY ALA LEU SER LEU TYR THR ALA LEU SEQRES 11 B 230 THR THR GLN GLN LYS LEU ALA GLY VAL THR ALA LEU SER SEQRES 12 B 230 CYS TRP LEU PRO LEU ARG ALA SER PHE PRO GLN GLY PRO SEQRES 13 B 230 ILE GLY GLY ALA ASN ARG ASP ILE SER ILE LEU GLN CYS SEQRES 14 B 230 HIS GLY ASP CYS ASP PRO LEU VAL PRO LEU MET PHE GLY SEQRES 15 B 230 SER LEU THR VAL GLU LYS LEU LYS THR LEU VAL ASN PRO SEQRES 16 B 230 ALA ASN VAL THR PHE LYS THR TYR GLU GLY MET MET HIS SEQRES 17 B 230 SER SER CYS GLN GLN GLU MET MET ASP VAL LYS GLN PHE SEQRES 18 B 230 ILE ASP LYS LEU LEU PRO PRO ILE ASP HET 71Q A 301 38 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET CL A 307 1 HET CL A 308 1 HET CL A 309 1 HET EDO A 310 4 HET 71Q B 301 38 HET EDO B 302 4 HET CL B 303 1 HETNAM 71Q N-[2-CHLORO-5-(TRIFLUOROMETHYL)PHENYL]-2-[4-(FURAN-2- HETNAM 2 71Q CARBONYL)PIPERAZIN-1-YL]ACETAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 71Q 2(C18 H17 CL F3 N3 O3) FORMUL 4 EDO 7(C2 H6 O2) FORMUL 9 CL 4(CL 1-) FORMUL 16 HOH *363(H2 O) HELIX 1 AA1 GLY A 34 GLY A 43 1 10 HELIX 2 AA2 THR A 62 MET A 65 5 4 HELIX 3 AA3 ASP A 85 ASN A 106 1 22 HELIX 4 AA4 PRO A 109 ASN A 111 5 3 HELIX 5 AA5 SER A 119 LEU A 130 1 12 HELIX 6 AA6 LEU A 148 PHE A 152 5 5 HELIX 7 AA7 PRO A 178 VAL A 193 1 16 HELIX 8 AA8 ASN A 194 ALA A 196 5 3 HELIX 9 AA9 CYS A 211 LEU A 226 1 16 HELIX 10 AB1 GLY B 34 GLY B 43 1 10 HELIX 11 AB2 THR B 62 MET B 65 5 4 HELIX 12 AB3 ASP B 85 ASN B 106 1 22 HELIX 13 AB4 PRO B 109 ASN B 111 5 3 HELIX 14 AB5 SER B 119 THR B 132 1 14 HELIX 15 AB6 LEU B 148 PHE B 152 5 5 HELIX 16 AB7 PRO B 178 VAL B 193 1 16 HELIX 17 AB8 ASN B 194 ALA B 196 5 3 HELIX 18 AB9 CYS B 211 LEU B 226 1 16 SHEET 1 AA1 7 ALA A 12 VAL A 14 0 SHEET 2 AA1 7 ILE A 49 CYS A 53 -1 O CYS A 53 N ALA A 12 SHEET 3 AA1 7 ALA A 22 LEU A 27 1 N VAL A 24 O ILE A 52 SHEET 4 AA1 7 ILE A 113 PHE A 118 1 O ILE A 114 N ILE A 25 SHEET 5 AA1 7 GLY A 138 LEU A 142 1 O LEU A 142 N GLY A 117 SHEET 6 AA1 7 SER A 165 GLY A 171 1 O LEU A 167 N VAL A 139 SHEET 7 AA1 7 VAL A 198 TYR A 203 1 O THR A 199 N GLN A 168 SHEET 1 AA2 2 VAL A 58 PRO A 60 0 SHEET 2 AA2 2 ALA A 68 PRO A 70 -1 O MET A 69 N ARG A 59 SHEET 1 AA3 7 ALA B 12 VAL B 14 0 SHEET 2 AA3 7 ILE B 49 CYS B 53 -1 O CYS B 53 N ALA B 12 SHEET 3 AA3 7 ALA B 22 LEU B 27 1 N VAL B 24 O ILE B 52 SHEET 4 AA3 7 ILE B 113 PHE B 118 1 O ILE B 114 N ILE B 25 SHEET 5 AA3 7 GLY B 138 LEU B 142 1 O LEU B 142 N GLY B 117 SHEET 6 AA3 7 SER B 165 GLY B 171 1 O LEU B 167 N ALA B 141 SHEET 7 AA3 7 VAL B 198 TYR B 203 1 O THR B 199 N GLN B 168 SHEET 1 AA4 2 VAL B 58 PRO B 60 0 SHEET 2 AA4 2 ALA B 68 PRO B 70 -1 O MET B 69 N ARG B 59 CISPEP 1 THR A 8 PRO A 9 0 5.14 SITE 1 AC1 15 ILE A 75 GLY A 77 LEU A 78 SER A 79 SITE 2 AC1 15 PRO A 80 TRP A 145 LEU A 146 ARG A 149 SITE 3 AC1 15 LEU A 176 VAL A 177 PHE A 181 THR A 185 SITE 4 AC1 15 CL A 308 HOH A 431 HOH A 456 SITE 1 AC2 4 GLY A 36 TRP A 37 SER A 210 MET B 65 SITE 1 AC3 4 SER A 210 CYS A 211 MET A 215 HOH A 531 SITE 1 AC4 8 LYS A 97 THR A 131 THR A 132 GLN A 133 SITE 2 AC4 8 HOH A 403 HOH A 423 GLU B 204 GLN B 213 SITE 1 AC5 6 LYS A 19 ALA A 20 ASN A 106 CL A 307 SITE 2 AC5 6 HOH A 428 ARG B 45 SITE 1 AC6 3 GLN A 83 GLU A 84 HOH A 459 SITE 1 AC7 4 ALA A 20 EDO A 305 ARG B 45 HOH B 547 SITE 1 AC8 5 LEU A 30 SER A 119 GLN A 120 71Q A 301 SITE 2 AC8 5 HOH B 414 SITE 1 AC9 4 ARG A 18 THR A 21 PRO A 228 ILE A 229 SITE 1 AD1 5 MET A 65 HOH A 466 GLY B 36 TRP B 37 SITE 2 AD1 5 SER B 210 SITE 1 AD2 16 LEU B 30 ILE B 75 GLY B 77 LEU B 78 SITE 2 AD2 16 SER B 79 PRO B 80 TRP B 145 LEU B 146 SITE 3 AD2 16 ARG B 149 LEU B 176 VAL B 177 PHE B 181 SITE 4 AD2 16 THR B 185 CL B 303 HOH B 408 HOH B 411 SITE 1 AD3 7 ASN A 66 GLY A 159 MET B 207 SER B 209 SITE 2 AD3 7 HOH B 417 HOH B 426 HOH B 450 SITE 1 AD4 5 HOH A 420 LEU B 30 SER B 119 GLN B 120 SITE 2 AD4 5 71Q B 301 CRYST1 71.670 73.690 81.820 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013953 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012222 0.00000