HEADER ENDOCYTOSIS 14-AUG-16 5SZG TITLE STRUCTURE OF THE BMERB DOMAIN OF MICAL-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-METHIONINE SULFOXIDE OXIDASE MICAL3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1841-1990; COMPND 5 SYNONYM: MOLECULE INTERACTING WITH CASL PROTEIN 3,MICAL-3; COMPND 6 EC: 1.14.13.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MICAL3, KIAA0819, KIAA1364; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MICAL-3, DUF3585, MICAL, RAB EFFECTOR, OXIDOREDUCTASE, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.RAI,A.OPRISKO,J.CAMPOS,Y.FU,T.FRIESE,A.ITZEN,R.S.GOODY,E.M.GAZDAG, AUTHOR 2 M.P.MUELLER REVDAT 4 06-SEP-17 5SZG 1 REMARK REVDAT 3 14-SEP-16 5SZG 1 JRNL REVDAT 2 07-SEP-16 5SZG 1 JRNL REVDAT 1 24-AUG-16 5SZG 0 JRNL AUTH A.RAI,A.OPRISKO,J.CAMPOS,Y.FU,T.FRIESE,A.ITZEN,R.S.GOODY, JRNL AUTH 2 E.M.GAZDAG,M.P.MULLER JRNL TITL BMERB DOMAINS ARE BIVALENT RAB8 FAMILY EFFECTORS EVOLVED BY JRNL TITL 2 GENE DUPLICATION. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27552051 JRNL DOI 10.7554/ELIFE.18675 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 10553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 556 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 754 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2089 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.30000 REMARK 3 B22 (A**2) : 1.93000 REMARK 3 B33 (A**2) : -3.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.691 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.348 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.620 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2119 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2092 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2831 ; 1.809 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4748 ; 1.543 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 5.701 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;38.500 ;23.826 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;16.865 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.038 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2396 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 484 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1046 ; 6.300 ; 6.643 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1045 ; 6.300 ; 6.638 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1301 ; 8.543 ; 9.924 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1302 ; 8.540 ; 9.930 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1073 ; 8.567 ; 7.718 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1073 ; 8.564 ; 7.718 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1530 ;12.865 ;11.165 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2216 ;14.491 ;50.618 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2217 ;14.489 ;50.628 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1843 1983 B 1843 1983 10982 0.21 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5SZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000220736. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978956 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20544 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : 0.14400 REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 1.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 7.0 50 % PEG 200, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.92900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.77850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.42400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.77850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.92900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.42400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1840 REMARK 465 GLY A 1881 REMARK 465 GLU A 1882 REMARK 465 ALA A 1883 REMARK 465 GLY A 1884 REMARK 465 MSE A 1885 REMARK 465 GLY A 1886 REMARK 465 LYS A 1887 REMARK 465 LYS A 1888 REMARK 465 ASP A 1889 REMARK 465 ASP A 1890 REMARK 465 GLU A 1984 REMARK 465 ASP A 1985 REMARK 465 LYS A 1986 REMARK 465 ASP A 1987 REMARK 465 LEU A 1988 REMARK 465 GLU A 1989 REMARK 465 ALA A 1990 REMARK 465 GLY B 1840 REMARK 465 LYS B 1841 REMARK 465 GLN B 1842 REMARK 465 ALA B 1939 REMARK 465 VAL B 1940 REMARK 465 GLU B 1941 REMARK 465 ASP B 1942 REMARK 465 HIS B 1943 REMARK 465 LEU B 1944 REMARK 465 LYS B 1945 REMARK 465 THR B 1946 REMARK 465 GLU B 1947 REMARK 465 GLU B 1948 REMARK 465 GLU B 1949 REMARK 465 LEU B 1950 REMARK 465 GLU B 1984 REMARK 465 ASP B 1985 REMARK 465 LYS B 1986 REMARK 465 ASP B 1987 REMARK 465 LEU B 1988 REMARK 465 GLU B 1989 REMARK 465 ALA B 1990 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1841 CG CD CE NZ REMARK 470 GLN A1842 CG CD OE1 NE2 REMARK 470 GLU A1843 CG CD OE1 OE2 REMARK 470 GLU A1844 CG CD OE1 OE2 REMARK 470 LEU A1845 CG CD1 CD2 REMARK 470 LYS A1846 CG CD CE NZ REMARK 470 LYS A1892 CG CD CE NZ REMARK 470 GLN A1895 CG CD OE1 NE2 REMARK 470 GLU A1896 CG CD OE1 OE2 REMARK 470 ARG A1935 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1936 CG CD OE1 OE2 REMARK 470 GLU A1947 CG CD OE1 OE2 REMARK 470 GLU A1948 CG CD OE1 OE2 REMARK 470 GLU A1949 CG CD OE1 OE2 REMARK 470 LYS A1954 CG CD CE NZ REMARK 470 GLU A1965 CG CD OE1 OE2 REMARK 470 ARG A1978 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1981 CG CD OE1 OE2 REMARK 470 ARG A1982 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1983 CG CD OE1 OE2 REMARK 470 GLU B1844 CG CD OE1 OE2 REMARK 470 GLN B1852 CG CD OE1 NE2 REMARK 470 GLN B1855 CG CD OE1 NE2 REMARK 470 GLU B1862 CG CD OE1 OE2 REMARK 470 ARG B1864 CG CD NE CZ NH1 NH2 REMARK 470 ARG B1866 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1869 CG CD OE1 OE2 REMARK 470 LYS B1887 CG CD CE NZ REMARK 470 LYS B1899 CG CD CE NZ REMARK 470 GLN B1902 CG CD OE1 NE2 REMARK 470 ARG B1935 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1952 CG CD OE1 OE2 REMARK 470 LYS B1954 CG CD CE NZ REMARK 470 GLN B1955 CG CD OE1 NE2 REMARK 470 GLU B1959 CG CD OE1 OE2 REMARK 470 GLU B1983 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 1857 OH TYR B 1910 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B1847 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B1847 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B1887 -60.95 -24.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 2002 DBREF 5SZG A 1841 1990 UNP Q7RTP6 MICA3_HUMAN 1841 1990 DBREF 5SZG B 1841 1990 UNP Q7RTP6 MICA3_HUMAN 1841 1990 SEQADV 5SZG GLY A 1840 UNP Q7RTP6 EXPRESSION TAG SEQADV 5SZG GLY B 1840 UNP Q7RTP6 EXPRESSION TAG SEQRES 1 A 151 GLY LYS GLN GLU GLU LEU LYS ARG LEU HIS ARG ALA GLN SEQRES 2 A 151 ILE ILE GLN ARG GLN LEU GLN GLN VAL GLU GLU ARG GLN SEQRES 3 A 151 ARG ARG LEU GLU GLU ARG GLY VAL ALA VAL GLU LYS ALA SEQRES 4 A 151 LEU ARG GLY GLU ALA GLY MSE GLY LYS LYS ASP ASP PRO SEQRES 5 A 151 LYS LEU MSE GLN GLU TRP PHE LYS LEU VAL GLN GLU LYS SEQRES 6 A 151 ASN ALA MSE VAL ARG TYR GLU SER GLU LEU MSE ILE PHE SEQRES 7 A 151 ALA ARG GLU LEU GLU LEU GLU ASP ARG GLN SER ARG LEU SEQRES 8 A 151 GLN GLN GLU LEU ARG GLU ARG MSE ALA VAL GLU ASP HIS SEQRES 9 A 151 LEU LYS THR GLU GLU GLU LEU SER GLU GLU LYS GLN ILE SEQRES 10 A 151 LEU ASN GLU MSE LEU GLU VAL VAL GLU GLN ARG ASP SER SEQRES 11 A 151 LEU VAL ALA LEU LEU GLU GLU GLN ARG LEU ARG GLU ARG SEQRES 12 A 151 GLU GLU ASP LYS ASP LEU GLU ALA SEQRES 1 B 151 GLY LYS GLN GLU GLU LEU LYS ARG LEU HIS ARG ALA GLN SEQRES 2 B 151 ILE ILE GLN ARG GLN LEU GLN GLN VAL GLU GLU ARG GLN SEQRES 3 B 151 ARG ARG LEU GLU GLU ARG GLY VAL ALA VAL GLU LYS ALA SEQRES 4 B 151 LEU ARG GLY GLU ALA GLY MSE GLY LYS LYS ASP ASP PRO SEQRES 5 B 151 LYS LEU MSE GLN GLU TRP PHE LYS LEU VAL GLN GLU LYS SEQRES 6 B 151 ASN ALA MSE VAL ARG TYR GLU SER GLU LEU MSE ILE PHE SEQRES 7 B 151 ALA ARG GLU LEU GLU LEU GLU ASP ARG GLN SER ARG LEU SEQRES 8 B 151 GLN GLN GLU LEU ARG GLU ARG MSE ALA VAL GLU ASP HIS SEQRES 9 B 151 LEU LYS THR GLU GLU GLU LEU SER GLU GLU LYS GLN ILE SEQRES 10 B 151 LEU ASN GLU MSE LEU GLU VAL VAL GLU GLN ARG ASP SER SEQRES 11 B 151 LEU VAL ALA LEU LEU GLU GLU GLN ARG LEU ARG GLU ARG SEQRES 12 B 151 GLU GLU ASP LYS ASP LEU GLU ALA MODRES 5SZG MSE A 1894 MET MODIFIED RESIDUE MODRES 5SZG MSE A 1907 MET MODIFIED RESIDUE MODRES 5SZG MSE A 1915 MET MODIFIED RESIDUE MODRES 5SZG MSE A 1938 MET MODIFIED RESIDUE MODRES 5SZG MSE A 1960 MET MODIFIED RESIDUE MODRES 5SZG MSE B 1885 MET MODIFIED RESIDUE MODRES 5SZG MSE B 1894 MET MODIFIED RESIDUE MODRES 5SZG MSE B 1907 MET MODIFIED RESIDUE MODRES 5SZG MSE B 1915 MET MODIFIED RESIDUE MODRES 5SZG MSE B 1938 MET MODIFIED RESIDUE MODRES 5SZG MSE B 1960 MET MODIFIED RESIDUE HET MSE A1894 8 HET MSE A1907 8 HET MSE A1915 8 HET MSE A1938 8 HET MSE A1960 8 HET MSE B1885 8 HET MSE B1894 8 HET MSE B1907 8 HET MSE B1915 8 HET MSE B1938 8 HET MSE B1960 8 HET PEG A2001 7 HET PEG A2002 7 HETNAM MSE SELENOMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 PEG 2(C4 H10 O3) HELIX 1 AA1 LYS A 1841 ALA A 1878 1 38 HELIX 2 AA2 LYS A 1892 ALA A 1939 1 48 HELIX 3 AA3 VAL A 1940 LYS A 1945 5 6 HELIX 4 AA4 THR A 1946 GLU A 1981 1 36 HELIX 5 AA5 GLU B 1844 ARG B 1880 1 37 HELIX 6 AA6 GLY B 1886 ASP B 1889 5 4 HELIX 7 AA7 ASP B 1890 MSE B 1938 1 49 HELIX 8 AA8 GLU B 1952 ARG B 1982 1 31 LINK C LEU A1893 N MSE A1894 1555 1555 1.33 LINK C MSE A1894 N GLN A1895 1555 1555 1.34 LINK C ALA A1906 N MSE A1907 1555 1555 1.34 LINK C MSE A1907 N VAL A1908 1555 1555 1.33 LINK C LEU A1914 N MSE A1915 1555 1555 1.32 LINK C MSE A1915 N ILE A1916 1555 1555 1.35 LINK C ARG A1937 N MSE A1938 1555 1555 1.32 LINK C MSE A1938 N ALA A1939 1555 1555 1.33 LINK C GLU A1959 N MSE A1960 1555 1555 1.32 LINK C MSE A1960 N LEU A1961 1555 1555 1.33 LINK C GLY B1884 N MSE B1885 1555 1555 1.33 LINK C MSE B1885 N GLY B1886 1555 1555 1.35 LINK C LEU B1893 N MSE B1894 1555 1555 1.34 LINK C MSE B1894 N GLN B1895 1555 1555 1.34 LINK C ALA B1906 N MSE B1907 1555 1555 1.33 LINK C MSE B1907 N VAL B1908 1555 1555 1.32 LINK C LEU B1914 N MSE B1915 1555 1555 1.33 LINK C MSE B1915 N ILE B1916 1555 1555 1.34 LINK C ARG B1937 N MSE B1938 1555 1555 1.33 LINK C GLU B1959 N MSE B1960 1555 1555 1.32 LINK C MSE B1960 N LEU B1961 1555 1555 1.33 SITE 1 AC1 3 GLY B1872 GLU B1876 LYS B1904 SITE 1 AC2 2 GLU A1876 LYS A1904 CRYST1 51.858 78.848 95.557 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019283 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010465 0.00000