HEADER CELL ADHESION 14-AUG-16 5SZQ TITLE PROTOCADHERIN GAMMA A4 EXTRACELLULAR CADHERIN DOMAINS 3-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOCADHERIN GAMMA-A4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PCDH-GAMMA-A4; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: PCDHGA4 EXTRACELLULAR DOMAINS 3-6 WITH C-TERMINAL COMPND 7 OCTAHISTIDINE TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PCDHGA4; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.M.GOODMAN,S.MANNEPALLI,F.BAHNA,B.HONIG,L.SHAPIRO REVDAT 5 04-OCT-23 5SZQ 1 HETSYN REVDAT 4 29-JUL-20 5SZQ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 27-SEP-17 5SZQ 1 REMARK REVDAT 2 09-NOV-16 5SZQ 1 JRNL REVDAT 1 02-NOV-16 5SZQ 0 JRNL AUTH K.M.GOODMAN,R.RUBINSTEIN,C.A.THU,S.MANNEPALLI,F.BAHNA, JRNL AUTH 2 G.AHLSEN,C.RITTENHOUSE,T.MANIATIS,B.HONIG,L.SHAPIRO JRNL TITL GAMMA-PROTOCADHERIN STRUCTURAL DIVERSITY AND FUNCTIONAL JRNL TITL 2 IMPLICATIONS. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27782885 JRNL DOI 10.7554/ELIFE.20930 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 51.7 REMARK 3 NUMBER OF REFLECTIONS : 11652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9575 - 4.1314 0.97 5450 282 0.2226 0.2469 REMARK 3 2 4.1314 - 3.2839 0.65 3463 174 0.2908 0.3324 REMARK 3 3 3.2839 - 2.8702 0.34 1778 78 0.3381 0.4409 REMARK 3 4 2.8702 - 2.6084 0.08 407 20 0.3529 0.4083 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3365 REMARK 3 ANGLE : 0.658 4618 REMARK 3 CHIRALITY : 0.048 578 REMARK 3 PLANARITY : 0.005 591 REMARK 3 DIHEDRAL : 15.093 2040 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 210:312)) REMARK 3 ORIGIN FOR THE GROUP (A): -56.9079 38.6104 -35.9493 REMARK 3 T TENSOR REMARK 3 T11: 0.8950 T22: 0.5328 REMARK 3 T33: 0.7031 T12: 0.0406 REMARK 3 T13: 0.2221 T23: 0.4222 REMARK 3 L TENSOR REMARK 3 L11: 0.8485 L22: 0.5841 REMARK 3 L33: 0.7170 L12: -0.1473 REMARK 3 L13: -0.2462 L23: -0.3017 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: -0.1166 S13: 0.6033 REMARK 3 S21: 0.0633 S22: 0.2669 S23: -0.2102 REMARK 3 S31: -0.5328 S32: 0.4454 S33: 0.0490 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 313:417)) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4235 36.3868 -78.2865 REMARK 3 T TENSOR REMARK 3 T11: 1.1925 T22: 2.0205 REMARK 3 T33: 0.3256 T12: -0.2970 REMARK 3 T13: 0.2516 T23: 0.6241 REMARK 3 L TENSOR REMARK 3 L11: 0.2087 L22: 0.2006 REMARK 3 L33: 0.5760 L12: 0.2157 REMARK 3 L13: -0.3368 L23: -0.3711 REMARK 3 S TENSOR REMARK 3 S11: 0.1498 S12: 0.6034 S13: -0.1636 REMARK 3 S21: -0.4872 S22: 0.1090 S23: 0.1926 REMARK 3 S31: 0.2956 S32: -0.0320 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 418:527)) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1870 50.5989-125.2481 REMARK 3 T TENSOR REMARK 3 T11: 0.8632 T22: 1.2065 REMARK 3 T33: 0.5832 T12: -0.1725 REMARK 3 T13: 0.0610 T23: -0.1568 REMARK 3 L TENSOR REMARK 3 L11: 1.2822 L22: 0.2309 REMARK 3 L33: 0.9389 L12: -0.4098 REMARK 3 L13: 0.0083 L23: -0.3271 REMARK 3 S TENSOR REMARK 3 S11: 0.0760 S12: -1.2694 S13: -0.2662 REMARK 3 S21: 0.1315 S22: 0.0416 S23: -0.1110 REMARK 3 S31: -0.0573 S32: 0.8596 S33: -0.0275 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 528:637)) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1344 54.4429-173.2050 REMARK 3 T TENSOR REMARK 3 T11: 0.3092 T22: 0.0323 REMARK 3 T33: 0.5945 T12: 0.1109 REMARK 3 T13: 0.0430 T23: -0.1923 REMARK 3 L TENSOR REMARK 3 L11: 0.4917 L22: 1.8981 REMARK 3 L33: 0.6171 L12: -0.3551 REMARK 3 L13: -0.0608 L23: 0.3913 REMARK 3 S TENSOR REMARK 3 S11: 0.2689 S12: 0.0813 S13: 0.0772 REMARK 3 S21: -0.1610 S22: 0.0685 S23: 0.0507 REMARK 3 S31: -0.5650 S32: -0.0305 S33: 0.1768 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23763 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 172.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 3.11800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: EC3-4 OF 5SZM, EC5 OF 5SZN AND EC6 OF 5SZR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM SULFATE, 9% (W/V) REMARK 280 PEG20000, 18% PEG550MME, 0.1 M MORPHEUS BUFFER SYSTEM 3 (TRIS/ REMARK 280 BICINE; MOLECULAR DIMENSIONS) PH 8.5, BATCH MODE, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.94500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 172.15500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 172.15500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.94500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 244 REMARK 465 VAL A 245 REMARK 465 ASN A 246 REMARK 465 PRO A 540 REMARK 465 THR A 541 REMARK 465 ASP A 542 REMARK 465 GLY A 543 REMARK 465 ASN A 639 REMARK 465 ILE A 640 REMARK 465 PRO A 641 REMARK 465 ASP A 642 REMARK 465 HIS A 643 REMARK 465 HIS A 644 REMARK 465 HIS A 645 REMARK 465 HIS A 646 REMARK 465 HIS A 647 REMARK 465 HIS A 648 REMARK 465 HIS A 649 REMARK 465 HIS A 650 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 227 CG CD1 CD2 REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LEU A 269 CG CD1 CD2 REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 370 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 372 CG OD1 ND2 REMARK 470 LEU A 377 CG CD1 CD2 REMARK 470 ARG A 439 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 611 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 442 C2 MAN A 705 2.04 REMARK 500 OG1 THR A 633 C2 MAN A 703 2.16 REMARK 500 OG1 THR A 631 C2 MAN A 702 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 215 O ASN A 436 3244 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 254 -85.70 -85.96 REMARK 500 ALA A 331 36.86 -79.53 REMARK 500 SER A 430 119.44 -166.35 REMARK 500 GLU A 435 -71.19 -56.72 REMARK 500 PRO A 451 2.95 -69.54 REMARK 500 ASP A 452 -146.04 -83.72 REMARK 500 ASP A 569 -169.38 -71.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 710 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 225 OE1 REMARK 620 2 ASP A 280 OD1 86.8 REMARK 620 3 GLU A 282 OE1 80.5 88.1 REMARK 620 4 ASP A 314 OD1 85.2 142.6 126.2 REMARK 620 5 ASP A 314 OD2 114.6 158.3 92.3 48.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 711 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 225 OE2 REMARK 620 2 GLU A 282 OE1 100.1 REMARK 620 3 GLU A 282 OE2 127.8 53.0 REMARK 620 4 ASP A 311 OD2 90.2 133.6 85.1 REMARK 620 5 VAL A 312 O 65.3 157.3 149.7 66.4 REMARK 620 6 ASP A 314 OD2 82.6 85.0 128.6 141.4 76.2 REMARK 620 7 ASP A 347 OD1 136.8 115.5 94.2 82.8 72.9 77.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 712 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 313 OD1 REMARK 620 2 ASN A 315 O 98.5 REMARK 620 3 ASP A 345 OD1 153.6 61.8 REMARK 620 4 ASP A 345 OD2 156.4 104.0 43.6 REMARK 620 5 ASP A 347 OD2 80.3 61.7 74.9 104.1 REMARK 620 6 ASN A 351 O 95.0 159.0 99.9 61.4 105.4 REMARK 620 7 ASP A 398 OD2 70.0 129.0 135.6 100.3 149.4 70.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 713 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 330 OE1 REMARK 620 2 ASP A 383 OD1 111.3 REMARK 620 3 ASP A 383 OD2 67.0 44.3 REMARK 620 4 GLU A 385 OE1 60.4 80.9 56.6 REMARK 620 5 ASP A 419 OD2 61.4 163.4 126.5 105.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 714 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 330 OE2 REMARK 620 2 GLU A 385 OE1 66.9 REMARK 620 3 GLU A 385 OE2 96.0 46.0 REMARK 620 4 ASP A 416 OD1 87.5 120.4 88.6 REMARK 620 5 ILE A 417 O 93.7 145.8 167.9 84.5 REMARK 620 6 ASP A 419 OD1 93.3 82.3 116.0 155.1 70.6 REMARK 620 7 ASP A 452 OD1 162.4 96.1 73.3 105.8 98.9 79.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 715 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 418 OD1 REMARK 620 2 ASN A 420 O 96.3 REMARK 620 3 ASP A 450 OD1 152.0 63.7 REMARK 620 4 ASP A 450 OD2 134.1 106.8 47.1 REMARK 620 5 ASP A 452 OD2 72.2 72.1 82.6 77.9 REMARK 620 6 ASN A 456 O 82.5 157.3 108.2 61.1 86.1 REMARK 620 7 ASP A 508 OD2 65.9 127.0 141.5 121.5 135.0 73.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 716 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 435 OE2 REMARK 620 2 ASP A 493 OD1 65.7 REMARK 620 3 ASP A 529 OD2 82.2 147.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 717 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 435 OE1 REMARK 620 2 GLU A 435 OE2 46.6 REMARK 620 3 GLU A 495 OE1 95.4 51.1 REMARK 620 4 GLU A 495 OE2 125.0 94.9 48.9 REMARK 620 5 ASP A 526 OD1 95.2 124.6 117.2 75.3 REMARK 620 6 GLN A 527 O 74.1 111.0 155.8 153.7 85.9 REMARK 620 7 ASP A 529 OD1 78.1 66.1 86.0 126.9 156.6 70.7 REMARK 620 8 ASP A 569 OD1 147.2 129.2 98.1 85.6 104.8 81.5 73.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 718 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 528 OD1 REMARK 620 2 ASN A 530 O 94.5 REMARK 620 3 ASP A 567 OD1 164.0 85.5 REMARK 620 4 ASP A 567 OD2 148.8 85.9 47.1 REMARK 620 5 ASP A 569 OD2 87.8 75.4 107.6 62.1 REMARK 620 6 ASN A 573 O 111.1 153.5 71.7 68.8 98.4 REMARK 620 7 ASP A 620 OD2 62.2 104.2 102.3 147.6 150.0 93.9 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SZR RELATED DB: PDB REMARK 900 RELATED ID: 5SZP RELATED DB: PDB REMARK 900 RELATED ID: 5SZO RELATED DB: PDB REMARK 900 RELATED ID: 5SZN RELATED DB: PDB REMARK 900 RELATED ID: 5SZM RELATED DB: PDB REMARK 900 RELATED ID: 5SZL RELATED DB: PDB DBREF 5SZQ A 210 642 UNP Q91XY4 PCDG4_MOUSE 237 669 SEQADV 5SZQ HIS A 643 UNP Q91XY4 EXPRESSION TAG SEQADV 5SZQ HIS A 644 UNP Q91XY4 EXPRESSION TAG SEQADV 5SZQ HIS A 645 UNP Q91XY4 EXPRESSION TAG SEQADV 5SZQ HIS A 646 UNP Q91XY4 EXPRESSION TAG SEQADV 5SZQ HIS A 647 UNP Q91XY4 EXPRESSION TAG SEQADV 5SZQ HIS A 648 UNP Q91XY4 EXPRESSION TAG SEQADV 5SZQ HIS A 649 UNP Q91XY4 EXPRESSION TAG SEQADV 5SZQ HIS A 650 UNP Q91XY4 EXPRESSION TAG SEQRES 1 A 441 ASN ALA PRO VAL PHE THR GLN PRO GLU TYR HIS ILE SER SEQRES 2 A 441 VAL LYS GLU ASN LEU PRO VAL GLY THR ARG LEU LEU THR SEQRES 3 A 441 ILE LYS ALA THR ASP PRO ASP GLU GLY VAL ASN GLY GLU SEQRES 4 A 441 VAL THR TYR SER PHE ARG ASN VAL ARG GLU LYS ILE SER SEQRES 5 A 441 GLN LEU PHE GLN LEU ASN SER LEU THR GLY ASP ILE THR SEQRES 6 A 441 VAL LEU GLY GLU LEU ASP TYR GLU ASP SER GLY PHE TYR SEQRES 7 A 441 ASP VAL ASP VAL GLU ALA HIS ASP GLY PRO GLY LEU ARG SEQRES 8 A 441 ALA ARG SER LYS VAL LEU VAL THR VAL LEU ASP VAL ASN SEQRES 9 A 441 ASP ASN ALA PRO GLU VAL THR VAL THR SER LEU THR SER SEQRES 10 A 441 SER ILE GLN GLU ALA SER SER PRO GLY THR VAL ILE ALA SEQRES 11 A 441 LEU PHE ASN VAL HIS ASP SER ASP SER GLY GLU ASN GLY SEQRES 12 A 441 LEU VAL THR CYS SER ILE PRO ASP ASN LEU PRO PHE ARG SEQRES 13 A 441 LEU GLU LYS THR TYR GLY ASN TYR HIS ARG LEU LEU ILE SEQRES 14 A 441 HIS ARG THR LEU ASP ARG GLU GLU VAL SER ASP TYR ASN SEQRES 15 A 441 ILE THR ILE THR ALA THR ASP GLN GLY THR PRO PRO LEU SEQRES 16 A 441 SER THR GLU THR TYR ILE SER LEU GLN VAL VAL ASP ILE SEQRES 17 A 441 ASN ASP ASN PRO PRO THR PHE THR HIS ALA SER TYR SER SEQRES 18 A 441 ALA TYR ILE PRO GLU ASN ASN PRO ARG GLY ALA SER ILE SEQRES 19 A 441 LEU SER ILE THR ALA GLN ASP PRO ASP SER GLY GLU ASN SEQRES 20 A 441 ALA GLN VAL ILE TYR SER LEU SER GLU ASP THR ILE GLN SEQRES 21 A 441 GLY ALA PRO MET SER SER TYR VAL SER ILE ASN SER ASN SEQRES 22 A 441 THR GLY VAL LEU TYR ALA LEU ARG SER PHE ASP TYR GLU SEQRES 23 A 441 GLN PHE GLN ASP LEU LYS LEU LEU VAL THR ALA ARG ASP SEQRES 24 A 441 SER GLY THR PRO PRO LEU SER SER ASN VAL SER LEU SER SEQRES 25 A 441 LEU SER VAL LEU ASP GLN ASN ASP ASN THR PRO GLU ILE SEQRES 26 A 441 LEU TYR PRO THR ILE PRO THR ASP GLY SER THR GLY VAL SEQRES 27 A 441 GLU LEU THR PRO ARG SER ALA ASP PRO GLY TYR LEU VAL SEQRES 28 A 441 THR LYS VAL VAL ALA VAL ASP LYS ASP SER GLY GLN ASN SEQRES 29 A 441 ALA TRP LEU SER TYR ARG LEU LEU LYS ALA SER GLU PRO SEQRES 30 A 441 GLY LEU PHE SER VAL GLY LEU HIS THR GLY GLU VAL ARG SEQRES 31 A 441 THR ALA ARG ALA LEU LEU ASP ARG ASP ALA LEU LYS GLN SEQRES 32 A 441 SER LEU VAL VAL THR VAL GLN ASP HIS GLY GLN PRO PRO SEQRES 33 A 441 LEU SER ALA THR VAL THR LEU THR ILE ALA VAL SER ASP SEQRES 34 A 441 ASN ILE PRO ASP HIS HIS HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET MAN A 701 11 HET MAN A 702 11 HET MAN A 703 11 HET MAN A 704 11 HET MAN A 705 11 HET MAN A 706 11 HET NAG A 709 14 HET CA A 710 1 HET CA A 711 1 HET CA A 712 1 HET CA A 713 1 HET CA A 714 1 HET CA A 715 1 HET CA A 716 1 HET CA A 717 1 HET CA A 718 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 3 MAN 6(C6 H12 O6) FORMUL 10 CA 9(CA 2+) HELIX 1 AA1 ARG A 257 LEU A 263 1 7 HELIX 2 AA2 SER A 348 GLY A 352 5 5 HELIX 3 AA3 SER A 453 GLN A 458 5 6 HELIX 4 AA4 SER A 570 ALA A 574 5 5 SHEET 1 AA1 2 VAL A 213 PHE A 214 0 SHEET 2 AA1 2 ALA A 238 THR A 239 -1 O THR A 239 N VAL A 213 SHEET 1 AA2 4 GLU A 218 LYS A 224 0 SHEET 2 AA2 4 ALA A 301 LEU A 310 1 O LEU A 306 N TYR A 219 SHEET 3 AA2 4 PHE A 286 HIS A 294 -1 N VAL A 289 O VAL A 305 SHEET 4 AA2 4 THR A 250 PHE A 253 -1 N THR A 250 O HIS A 294 SHEET 1 AA3 3 ARG A 232 THR A 235 0 SHEET 2 AA3 3 ASP A 272 VAL A 275 -1 O ILE A 273 N LEU A 233 SHEET 3 AA3 3 PHE A 264 LEU A 266 -1 N GLN A 265 O THR A 274 SHEET 1 AA4 4 GLU A 318 LEU A 324 0 SHEET 2 AA4 4 ALA A 339 HIS A 344 -1 O ASN A 342 N THR A 320 SHEET 3 AA4 4 TYR A 373 LEU A 377 -1 O HIS A 374 N PHE A 341 SHEET 4 AA4 4 ARG A 365 TYR A 370 -1 N GLU A 367 O ARG A 375 SHEET 1 AA5 4 SER A 327 ILE A 328 0 SHEET 2 AA5 4 SER A 405 VAL A 414 1 O GLN A 413 N ILE A 328 SHEET 3 AA5 4 ASP A 389 ASP A 398 -1 N ILE A 394 O THR A 408 SHEET 4 AA5 4 VAL A 354 SER A 357 -1 N THR A 355 O THR A 397 SHEET 1 AA6 2 THR A 423 PHE A 424 0 SHEET 2 AA6 2 ALA A 448 GLN A 449 -1 O GLN A 449 N THR A 423 SHEET 1 AA7 4 SER A 428 PRO A 434 0 SHEET 2 AA7 4 SER A 516 LEU A 525 1 O LEU A 525 N ILE A 433 SHEET 3 AA7 4 ASP A 499 ARG A 507 -1 N VAL A 504 O VAL A 518 SHEET 4 AA7 4 ILE A 460 LEU A 463 -1 N SER A 462 O THR A 505 SHEET 1 AA8 3 ALA A 441 ILE A 446 0 SHEET 2 AA8 3 GLY A 484 ALA A 488 -1 O LEU A 486 N ILE A 443 SHEET 3 AA8 3 VAL A 477 ILE A 479 -1 N SER A 478 O TYR A 487 SHEET 1 AA9 2 THR A 467 ILE A 468 0 SHEET 2 AA9 2 ALA A 471 PRO A 472 -1 O ALA A 471 N ILE A 468 SHEET 1 AB1 2 GLU A 533 TYR A 536 0 SHEET 2 AB1 2 VAL A 564 VAL A 566 -1 O VAL A 566 N GLU A 533 SHEET 1 AB2 4 VAL A 547 THR A 550 0 SHEET 2 AB2 4 SER A 627 VAL A 636 1 O ALA A 635 N GLU A 548 SHEET 3 AB2 4 LYS A 611 ASP A 620 -1 N VAL A 616 O VAL A 630 SHEET 4 AB2 4 LEU A 576 ALA A 583 -1 N LEU A 581 O VAL A 615 SHEET 1 AB3 3 LEU A 559 LYS A 562 0 SHEET 2 AB3 3 GLU A 597 THR A 600 -1 O VAL A 598 N THR A 561 SHEET 3 AB3 3 PHE A 589 VAL A 591 -1 N SER A 590 O ARG A 599 LINK ND2 ASN A 391 C1 NAG B 1 1555 1555 1.44 LINK OG SER A 442 C1 MAN A 705 1555 1555 1.44 LINK OG1 THR A 447 C1 MAN A 706 1555 1555 1.44 LINK ND2 ASN A 517 C1 NAG A 709 1555 1555 1.45 LINK OG SER A 627 C1 MAN A 701 1555 1555 1.44 LINK OG1 THR A 629 C1 MAN A 704 1555 1555 1.44 LINK OG1 THR A 631 C1 MAN A 702 1555 1555 1.44 LINK OG1 THR A 633 C1 MAN A 703 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK OE1 GLU A 225 CA CA A 710 1555 1555 2.58 LINK OE2 GLU A 225 CA CA A 711 1555 1555 2.30 LINK OD1 ASP A 280 CA CA A 710 1555 1555 2.30 LINK OE1 GLU A 282 CA CA A 710 1555 1555 2.49 LINK OE1 GLU A 282 CA CA A 711 1555 1555 2.63 LINK OE2 GLU A 282 CA CA A 711 1555 1555 2.22 LINK OD2 ASP A 311 CA CA A 711 1555 1555 2.97 LINK O VAL A 312 CA CA A 711 1555 1555 2.71 LINK OD1 ASN A 313 CA CA A 712 1555 1555 2.46 LINK OD1 ASP A 314 CA CA A 710 1555 1555 2.50 LINK OD2 ASP A 314 CA CA A 710 1555 1555 2.80 LINK OD2 ASP A 314 CA CA A 711 1555 1555 3.01 LINK O ASN A 315 CA CA A 712 1555 1555 2.45 LINK OE1 GLU A 330 CA CA A 713 1555 1555 2.60 LINK OE2 GLU A 330 CA CA A 714 1555 1555 2.58 LINK OD1 ASP A 345 CA CA A 712 1555 1555 3.17 LINK OD2 ASP A 345 CA CA A 712 1555 1555 2.51 LINK OD1 ASP A 347 CA CA A 711 1555 1555 2.43 LINK OD2 ASP A 347 CA CA A 712 1555 1555 2.62 LINK O ASN A 351 CA CA A 712 1555 1555 2.63 LINK OD1 ASP A 383 CA CA A 713 1555 1555 3.11 LINK OD2 ASP A 383 CA CA A 713 1555 1555 2.55 LINK OE1 GLU A 385 CA CA A 713 1555 1555 3.07 LINK OE1 GLU A 385 CA CA A 714 1555 1555 3.04 LINK OE2 GLU A 385 CA CA A 714 1555 1555 2.32 LINK OD2 ASP A 398 CA CA A 712 1555 1555 2.17 LINK OD1 ASP A 416 CA CA A 714 1555 1555 2.33 LINK O ILE A 417 CA CA A 714 1555 1555 2.45 LINK OD1 ASN A 418 CA CA A 715 1555 1555 2.36 LINK OD2 ASP A 419 CA CA A 713 1555 1555 2.46 LINK OD1 ASP A 419 CA CA A 714 1555 1555 3.00 LINK O ASN A 420 CA CA A 715 1555 1555 2.44 LINK OE2 GLU A 435 CA CA A 716 1555 1555 2.32 LINK OE1 GLU A 435 CA CA A 717 1555 1555 2.39 LINK OE2 GLU A 435 CA CA A 717 1555 1555 3.00 LINK OD1 ASP A 450 CA CA A 715 1555 1555 2.92 LINK OD2 ASP A 450 CA CA A 715 1555 1555 2.48 LINK OD1 ASP A 452 CA CA A 714 1555 1555 2.78 LINK OD2 ASP A 452 CA CA A 715 1555 1555 2.82 LINK O ASN A 456 CA CA A 715 1555 1555 2.45 LINK OD1 ASP A 493 CA CA A 716 1555 1555 2.31 LINK OE1 GLU A 495 CA CA A 717 1555 1555 2.90 LINK OE2 GLU A 495 CA CA A 717 1555 1555 2.14 LINK OD2 ASP A 508 CA CA A 715 1555 1555 2.64 LINK OD1 ASP A 526 CA CA A 717 1555 1555 2.58 LINK O GLN A 527 CA CA A 717 1555 1555 2.43 LINK OD1 ASN A 528 CA CA A 718 1555 1555 2.43 LINK OD2 ASP A 529 CA CA A 716 1555 1555 2.15 LINK OD1 ASP A 529 CA CA A 717 1555 1555 2.57 LINK O ASN A 530 CA CA A 718 1555 1555 2.54 LINK OD1 ASP A 567 CA CA A 718 1555 1555 2.49 LINK OD2 ASP A 567 CA CA A 718 1555 1555 2.91 LINK OD1 ASP A 569 CA CA A 717 1555 1555 2.69 LINK OD2 ASP A 569 CA CA A 718 1555 1555 2.33 LINK O ASN A 573 CA CA A 718 1555 1555 2.70 LINK OD2 ASP A 620 CA CA A 718 1555 1555 2.41 CISPEP 1 THR A 401 PRO A 402 0 -4.79 CISPEP 2 THR A 511 PRO A 512 0 -7.03 CISPEP 3 TYR A 536 PRO A 537 0 -0.28 CISPEP 4 GLN A 623 PRO A 624 0 -6.24 CRYST1 31.890 63.640 344.310 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002904 0.00000