HEADER HYDROLASE 15-AUG-16 5SZY TITLE NOVEL STRUCTURAL INSIGHTS INTO GDP-MEDIATED REGULATION OF ACYL-COA TITLE 2 THIOESTERASES CAVEAT 5SZY RESIDUES GLN 151 - ALA 158 IN CHAINS A,C, D ARE NOT PROPERLY CAVEAT 2 5SZY LINKED: DISTANCE BETWEEN C AND N IS OVER 3A CL LIGANDS HAVE CAVEAT 3 5SZY ZERO OCCUPANCY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA HYDROLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.1.2.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 GENE: ERS514298_01532, ERS514410_00397, ERS514534_01643, SOURCE 5 ERS514708_01580, ERS514851_00814; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG KEYWDS THIOESTERASE, NISSERIA MENINGITIDIS, 4HBT, HYDROLASE, ACYL-COA KEYWDS 2 THIOESTERASE, COENZYME A, GDP EXPDTA X-RAY DIFFRACTION AUTHOR Y.B.KHANDOKAR,P.SRIVASTAVA,J.K.FORWOOD REVDAT 4 04-OCT-23 5SZY 1 REMARK REVDAT 3 27-DEC-17 5SZY 1 CAVEAT JRNL REVDAT 2 18-OCT-17 5SZY 1 CAVEAT JRNL REMARK REVDAT 1 14-SEP-16 5SZY 0 JRNL AUTH Y.B.KHANDOKAR,P.SRIVASTAVA,N.COWIESON,S.SARKER,D.ARAGAO, JRNL AUTH 2 S.DAS,K.M.SMITH,S.R.RAIDAL,J.K.FORWOOD JRNL TITL STRUCTURAL INSIGHTS INTO GDP-MEDIATED REGULATION OF A JRNL TITL 2 BACTERIAL ACYL-COA THIOESTERASE. JRNL REF J. BIOL. CHEM. V. 292 20461 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28972175 JRNL DOI 10.1074/JBC.M117.800227 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 80083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0211 - 6.1353 1.00 2734 174 0.1972 0.1950 REMARK 3 2 6.1353 - 4.8736 1.00 2731 99 0.1882 0.1833 REMARK 3 3 4.8736 - 4.2587 1.00 2661 144 0.1520 0.1736 REMARK 3 4 4.2587 - 3.8698 1.00 2642 151 0.1713 0.1860 REMARK 3 5 3.8698 - 3.5927 1.00 2608 155 0.1773 0.1787 REMARK 3 6 3.5927 - 3.3811 1.00 2678 111 0.1870 0.2252 REMARK 3 7 3.3811 - 3.2118 1.00 2664 119 0.1967 0.2262 REMARK 3 8 3.2118 - 3.0721 1.00 2598 133 0.2084 0.2116 REMARK 3 9 3.0721 - 2.9539 1.00 2649 147 0.2106 0.2126 REMARK 3 10 2.9539 - 2.8520 1.00 2623 144 0.2174 0.2285 REMARK 3 11 2.8520 - 2.7629 1.00 2598 130 0.2253 0.2413 REMARK 3 12 2.7629 - 2.6839 1.00 2644 121 0.2192 0.2726 REMARK 3 13 2.6839 - 2.6133 1.00 2602 142 0.2298 0.2323 REMARK 3 14 2.6133 - 2.5495 1.00 2580 164 0.2177 0.2398 REMARK 3 15 2.5495 - 2.4916 1.00 2586 152 0.2161 0.2546 REMARK 3 16 2.4916 - 2.4386 1.00 2667 142 0.2183 0.2478 REMARK 3 17 2.4386 - 2.3898 1.00 2581 127 0.2116 0.2458 REMARK 3 18 2.3898 - 2.3447 1.00 2612 136 0.2098 0.2151 REMARK 3 19 2.3447 - 2.3029 1.00 2610 129 0.2019 0.2454 REMARK 3 20 2.3029 - 2.2638 1.00 2641 136 0.2031 0.2095 REMARK 3 21 2.2638 - 2.2273 1.00 2520 181 0.2105 0.2101 REMARK 3 22 2.2273 - 2.1931 1.00 2654 128 0.2043 0.1932 REMARK 3 23 2.1931 - 2.1608 1.00 2545 152 0.2079 0.2097 REMARK 3 24 2.1608 - 2.1304 1.00 2631 134 0.2099 0.2255 REMARK 3 25 2.1304 - 2.1016 1.00 2591 141 0.2113 0.2200 REMARK 3 26 2.1016 - 2.0743 1.00 2610 135 0.2138 0.2601 REMARK 3 27 2.0743 - 2.0484 1.00 2602 136 0.2176 0.2057 REMARK 3 28 2.0484 - 2.0237 1.00 2597 145 0.2226 0.2347 REMARK 3 29 2.0237 - 2.0002 1.00 2594 122 0.2299 0.2316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5066 REMARK 3 ANGLE : 1.430 6902 REMARK 3 CHIRALITY : 0.055 770 REMARK 3 PLANARITY : 0.007 839 REMARK 3 DIHEDRAL : 18.731 1952 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5SZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80089 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IEN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 8.5 AND 2 M AMMONIUM REMARK 280 PHOSPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 76.40000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.40000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.40000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 76.40000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 76.40000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 76.40000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 76.40000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 76.40000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 76.40000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 76.40000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 76.40000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 76.40000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 76.40000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 76.40000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 76.40000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 76.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -205.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 76.40000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 76.40000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -76.40000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 76.40000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -202.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 76.40000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 76.40000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -76.40000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 76.40000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 160 REMARK 465 ASP A 161 REMARK 465 MET A 162 REMARK 465 SER A 163 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLN B 3 REMARK 465 GLN B 4 REMARK 465 ALA B 152 REMARK 465 SER B 153 REMARK 465 GLU B 154 REMARK 465 ASP B 155 REMARK 465 MET B 156 REMARK 465 SER B 157 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 GLN C 3 REMARK 465 GLN C 4 REMARK 465 SER C 159 REMARK 465 GLU C 160 REMARK 465 ASP C 161 REMARK 465 MET C 162 REMARK 465 SER C 163 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLN D 3 REMARK 465 GLN D 4 REMARK 465 SER D 159 REMARK 465 GLU D 160 REMARK 465 ASP D 161 REMARK 465 MET D 162 REMARK 465 SER D 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 82 NH1 ARG B 146 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 85 -63.12 -101.86 REMARK 500 ARG B 85 -60.75 -107.79 REMARK 500 ARG C 85 -62.95 -106.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 CL A 202 REMARK 615 CL B 203 REMARK 615 CL B 204 REMARK 615 CL C 202 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP D 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SZU RELATED DB: PDB REMARK 900 RELATED ID: 5SZV RELATED DB: PDB REMARK 900 RELATED ID: 5SZZ RELATED DB: PDB REMARK 900 RELATED ID: 5T02 RELATED DB: PDB DBREF1 5SZY A 1 163 UNP A0A0Y5D4F5_NEIME DBREF2 5SZY A A0A0Y5D4F5 1 157 DBREF1 5SZY B 1 157 UNP A0A0Y5D4F5_NEIME DBREF2 5SZY B A0A0Y5D4F5 1 157 DBREF1 5SZY C 1 163 UNP A0A0Y5D4F5_NEIME DBREF2 5SZY C A0A0Y5D4F5 1 157 DBREF1 5SZY D 1 163 UNP A0A0Y5D4F5_NEIME DBREF2 5SZY D A0A0Y5D4F5 1 157 SEQADV 5SZY SER A -2 UNP A0A0Y5D4F EXPRESSION TAG SEQADV 5SZY ASN A -1 UNP A0A0Y5D4F EXPRESSION TAG SEQADV 5SZY ALA A 0 UNP A0A0Y5D4F EXPRESSION TAG SEQADV 5SZY ALA A 24 UNP A0A0Y5D4F ASN 24 ENGINEERED MUTATION SEQADV 5SZY SER B -2 UNP A0A0Y5D4F EXPRESSION TAG SEQADV 5SZY ASN B -1 UNP A0A0Y5D4F EXPRESSION TAG SEQADV 5SZY ALA B 0 UNP A0A0Y5D4F EXPRESSION TAG SEQADV 5SZY ALA B 24 UNP A0A0Y5D4F ASN 24 ENGINEERED MUTATION SEQADV 5SZY SER C -2 UNP A0A0Y5D4F EXPRESSION TAG SEQADV 5SZY ASN C -1 UNP A0A0Y5D4F EXPRESSION TAG SEQADV 5SZY ALA C 0 UNP A0A0Y5D4F EXPRESSION TAG SEQADV 5SZY ALA C 24 UNP A0A0Y5D4F ASN 24 ENGINEERED MUTATION SEQADV 5SZY SER D -2 UNP A0A0Y5D4F EXPRESSION TAG SEQADV 5SZY ASN D -1 UNP A0A0Y5D4F EXPRESSION TAG SEQADV 5SZY ALA D 0 UNP A0A0Y5D4F EXPRESSION TAG SEQADV 5SZY ALA D 24 UNP A0A0Y5D4F ASN 24 ENGINEERED MUTATION SEQRES 1 A 160 SER ASN ALA MET THR GLN GLN ARG GLN LEU PRO SER HIS SEQRES 2 A 160 GLU LEU ILE MET SER GLU LEU MET MET PRO ASP THR ALA SEQRES 3 A 160 ALA PHE SER GLY ASN VAL HIS GLY GLY GLU LEU LEU LEU SEQRES 4 A 160 LEU LEU ASP GLN VAL ALA TYR SER CYS ALA SER ARG TYR SEQRES 5 A 160 SER GLY ASN TYR CYS VAL THR LEU SER VAL ASP LYS VAL SEQRES 6 A 160 LEU PHE LYS GLU PRO ILE HIS ILE GLY ASP LEU VAL THR SEQRES 7 A 160 PHE TYR ALA ALA VAL ASN TYR THR GLY ARG THR SER MET SEQRES 8 A 160 GLU ILE GLY ILE ARG VAL GLU ALA GLN ASN ILE ARG THR SEQRES 9 A 160 GLY GLU ILE ARG HIS THR ASN SER CYS TYR PHE THR MET SEQRES 10 A 160 VAL ALA VAL LYS ASP GLY LYS PRO VAL PRO VAL PRO PRO SEQRES 11 A 160 LEU GLU ILE LEU THR ASP ARG GLN ARG CYS ARG TYR GLU SEQRES 12 A 160 LYS ALA LYS LYS ARG ARG ASP ILE SER LEU GLN ALA SER SEQRES 13 A 160 GLU ASP MET SER SEQRES 1 B 160 SER ASN ALA MET THR GLN GLN ARG GLN LEU PRO SER HIS SEQRES 2 B 160 GLU LEU ILE MET SER GLU LEU MET MET PRO ASP THR ALA SEQRES 3 B 160 ALA PHE SER GLY ASN VAL HIS GLY GLY GLU LEU LEU LEU SEQRES 4 B 160 LEU LEU ASP GLN VAL ALA TYR SER CYS ALA SER ARG TYR SEQRES 5 B 160 SER GLY ASN TYR CYS VAL THR LEU SER VAL ASP LYS VAL SEQRES 6 B 160 LEU PHE LYS GLU PRO ILE HIS ILE GLY ASP LEU VAL THR SEQRES 7 B 160 PHE TYR ALA ALA VAL ASN TYR THR GLY ARG THR SER MET SEQRES 8 B 160 GLU ILE GLY ILE ARG VAL GLU ALA GLN ASN ILE ARG THR SEQRES 9 B 160 GLY GLU ILE ARG HIS THR ASN SER CYS TYR PHE THR MET SEQRES 10 B 160 VAL ALA VAL LYS ASP GLY LYS PRO VAL PRO VAL PRO PRO SEQRES 11 B 160 LEU GLU ILE LEU THR ASP ARG GLN ARG CYS ARG TYR GLU SEQRES 12 B 160 LYS ALA LYS LYS ARG ARG ASP ILE SER LEU GLN ALA SER SEQRES 13 B 160 GLU ASP MET SER SEQRES 1 C 160 SER ASN ALA MET THR GLN GLN ARG GLN LEU PRO SER HIS SEQRES 2 C 160 GLU LEU ILE MET SER GLU LEU MET MET PRO ASP THR ALA SEQRES 3 C 160 ALA PHE SER GLY ASN VAL HIS GLY GLY GLU LEU LEU LEU SEQRES 4 C 160 LEU LEU ASP GLN VAL ALA TYR SER CYS ALA SER ARG TYR SEQRES 5 C 160 SER GLY ASN TYR CYS VAL THR LEU SER VAL ASP LYS VAL SEQRES 6 C 160 LEU PHE LYS GLU PRO ILE HIS ILE GLY ASP LEU VAL THR SEQRES 7 C 160 PHE TYR ALA ALA VAL ASN TYR THR GLY ARG THR SER MET SEQRES 8 C 160 GLU ILE GLY ILE ARG VAL GLU ALA GLN ASN ILE ARG THR SEQRES 9 C 160 GLY GLU ILE ARG HIS THR ASN SER CYS TYR PHE THR MET SEQRES 10 C 160 VAL ALA VAL LYS ASP GLY LYS PRO VAL PRO VAL PRO PRO SEQRES 11 C 160 LEU GLU ILE LEU THR ASP ARG GLN ARG CYS ARG TYR GLU SEQRES 12 C 160 LYS ALA LYS LYS ARG ARG ASP ILE SER LEU GLN ALA SER SEQRES 13 C 160 GLU ASP MET SER SEQRES 1 D 160 SER ASN ALA MET THR GLN GLN ARG GLN LEU PRO SER HIS SEQRES 2 D 160 GLU LEU ILE MET SER GLU LEU MET MET PRO ASP THR ALA SEQRES 3 D 160 ALA PHE SER GLY ASN VAL HIS GLY GLY GLU LEU LEU LEU SEQRES 4 D 160 LEU LEU ASP GLN VAL ALA TYR SER CYS ALA SER ARG TYR SEQRES 5 D 160 SER GLY ASN TYR CYS VAL THR LEU SER VAL ASP LYS VAL SEQRES 6 D 160 LEU PHE LYS GLU PRO ILE HIS ILE GLY ASP LEU VAL THR SEQRES 7 D 160 PHE TYR ALA ALA VAL ASN TYR THR GLY ARG THR SER MET SEQRES 8 D 160 GLU ILE GLY ILE ARG VAL GLU ALA GLN ASN ILE ARG THR SEQRES 9 D 160 GLY GLU ILE ARG HIS THR ASN SER CYS TYR PHE THR MET SEQRES 10 D 160 VAL ALA VAL LYS ASP GLY LYS PRO VAL PRO VAL PRO PRO SEQRES 11 D 160 LEU GLU ILE LEU THR ASP ARG GLN ARG CYS ARG TYR GLU SEQRES 12 D 160 LYS ALA LYS LYS ARG ARG ASP ILE SER LEU GLN ALA SER SEQRES 13 D 160 GLU ASP MET SER HET GDP A 200 28 HET COA A 201 48 HET CL A 202 1 HET GDP B 201 28 HET COA B 202 48 HET CL B 203 1 HET CL B 204 1 HET GDP C 200 28 HET COA C 201 48 HET CL C 202 1 HET GDP D 200 28 HET COA D 201 48 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM COA COENZYME A HETNAM CL CHLORIDE ION FORMUL 5 GDP 4(C10 H15 N5 O11 P2) FORMUL 6 COA 4(C21 H36 N7 O16 P3 S) FORMUL 7 CL 4(CL 1-) FORMUL 17 HOH *330(H2 O) HELIX 1 AA1 MET A 19 ALA A 23 5 5 HELIX 2 AA2 HIS A 30 GLY A 51 1 22 HELIX 3 AA3 THR A 132 GLN A 151 1 20 HELIX 4 AA4 MET B 19 ALA B 23 5 5 HELIX 5 AA5 HIS B 30 GLY B 51 1 22 HELIX 6 AA6 THR B 132 GLN B 151 1 20 HELIX 7 AA7 MET C 19 ALA C 23 5 5 HELIX 8 AA8 HIS C 30 GLY C 51 1 22 HELIX 9 AA9 THR C 132 GLN C 151 1 20 HELIX 10 AB1 MET D 19 ALA D 23 5 5 HELIX 11 AB2 HIS D 30 GLY D 51 1 22 HELIX 12 AB3 THR D 132 GLN D 151 1 20 SHEET 1 AA1 5 GLU A 11 LEU A 17 0 SHEET 2 AA1 5 LEU A 73 THR A 83 -1 O PHE A 76 N MET A 14 SHEET 3 AA1 5 SER A 87 GLN A 97 -1 O GLN A 97 N LEU A 73 SHEET 4 AA1 5 ILE A 104 LYS A 118 -1 O PHE A 112 N ILE A 90 SHEET 5 AA1 5 CYS A 54 VAL A 59 -1 N SER A 58 O THR A 113 SHEET 1 AA2 5 GLU A 11 LEU A 17 0 SHEET 2 AA2 5 LEU A 73 THR A 83 -1 O PHE A 76 N MET A 14 SHEET 3 AA2 5 SER A 87 GLN A 97 -1 O GLN A 97 N LEU A 73 SHEET 4 AA2 5 ILE A 104 LYS A 118 -1 O PHE A 112 N ILE A 90 SHEET 5 AA2 5 LYS A 121 PRO A 122 -1 O LYS A 121 N LYS A 118 SHEET 1 AA3 5 GLU B 11 LEU B 17 0 SHEET 2 AA3 5 LEU B 73 THR B 83 -1 O PHE B 76 N MET B 14 SHEET 3 AA3 5 SER B 87 GLN B 97 -1 O GLN B 97 N LEU B 73 SHEET 4 AA3 5 ILE B 104 LYS B 118 -1 O PHE B 112 N ILE B 90 SHEET 5 AA3 5 LYS B 121 PRO B 122 -1 O LYS B 121 N LYS B 118 SHEET 1 AA4 6 GLU B 11 LEU B 17 0 SHEET 2 AA4 6 LEU B 73 THR B 83 -1 O PHE B 76 N MET B 14 SHEET 3 AA4 6 SER B 87 GLN B 97 -1 O GLN B 97 N LEU B 73 SHEET 4 AA4 6 ILE B 104 LYS B 118 -1 O PHE B 112 N ILE B 90 SHEET 5 AA4 6 CYS B 54 VAL B 59 -1 N SER B 58 O THR B 113 SHEET 6 AA4 6 VAL D 62 LEU D 63 -1 O VAL D 62 N VAL B 59 SHEET 1 AA5 6 VAL B 62 LEU B 63 0 SHEET 2 AA5 6 CYS D 54 VAL D 59 -1 O VAL D 59 N VAL B 62 SHEET 3 AA5 6 ILE D 104 LYS D 118 -1 O THR D 113 N LEU D 57 SHEET 4 AA5 6 SER D 87 GLN D 97 -1 N ILE D 90 O PHE D 112 SHEET 5 AA5 6 LEU D 73 THR D 83 -1 N THR D 75 O GLU D 95 SHEET 6 AA5 6 GLU D 11 LEU D 17 -1 N MET D 14 O PHE D 76 SHEET 1 AA6 4 VAL B 62 LEU B 63 0 SHEET 2 AA6 4 CYS D 54 VAL D 59 -1 O VAL D 59 N VAL B 62 SHEET 3 AA6 4 ILE D 104 LYS D 118 -1 O THR D 113 N LEU D 57 SHEET 4 AA6 4 LYS D 121 PRO D 122 -1 O LYS D 121 N LYS D 118 SHEET 1 AA7 5 GLU C 11 LEU C 17 0 SHEET 2 AA7 5 LEU C 73 THR C 83 -1 O PHE C 76 N MET C 14 SHEET 3 AA7 5 SER C 87 GLN C 97 -1 O GLU C 95 N THR C 75 SHEET 4 AA7 5 ILE C 104 LYS C 118 -1 O PHE C 112 N ILE C 90 SHEET 5 AA7 5 CYS C 54 VAL C 59 -1 N LEU C 57 O THR C 113 SHEET 1 AA8 5 GLU C 11 LEU C 17 0 SHEET 2 AA8 5 LEU C 73 THR C 83 -1 O PHE C 76 N MET C 14 SHEET 3 AA8 5 SER C 87 GLN C 97 -1 O GLU C 95 N THR C 75 SHEET 4 AA8 5 ILE C 104 LYS C 118 -1 O PHE C 112 N ILE C 90 SHEET 5 AA8 5 LYS C 121 PRO C 122 -1 O LYS C 121 N LYS C 118 SITE 1 AC1 15 GLU A 11 TYR A 77 ALA A 78 ALA A 79 SITE 2 AC1 15 ASN A 81 GLY A 91 ILE A 92 ARG A 93 SITE 3 AC1 15 HIS A 106 SER A 109 TYR A 111 ARG A 138 SITE 4 AC1 15 HOH A 322 HOH A 341 ARG C 5 SITE 1 AC2 22 THR A 56 LEU A 57 GLY A 84 ARG A 85 SITE 2 AC2 22 THR A 86 SER A 87 PRO A 122 ARG A 146 SITE 3 AC2 22 SER A 149 LEU A 150 HOH A 313 HOH A 318 SITE 4 AC2 22 HOH A 330 HOH A 333 HOH A 339 HOH A 345 SITE 5 AC2 22 VAL C 29 LEU C 34 PHE C 64 LYS C 65 SITE 6 AC2 22 GLU C 66 PRO C 67 SITE 1 AC3 13 TYR B 77 ALA B 78 ALA B 79 ASN B 81 SITE 2 AC3 13 GLY B 91 ILE B 92 ARG B 93 HIS B 106 SITE 3 AC3 13 SER B 109 TYR B 111 HOH B 307 HOH B 343 SITE 4 AC3 13 ARG D 5 SITE 1 AC4 19 THR B 56 LEU B 57 GLY B 84 ARG B 85 SITE 2 AC4 19 THR B 86 SER B 87 PRO B 122 ARG B 146 SITE 3 AC4 19 SER B 149 HOH B 311 HOH B 321 HOH B 342 SITE 4 AC4 19 GLU C 129 VAL D 29 LEU D 34 PHE D 64 SITE 5 AC4 19 LYS D 65 GLU D 66 PRO D 67 SITE 1 AC5 16 ARG A 5 GLU C 11 TYR C 77 ALA C 78 SITE 2 AC5 16 ALA C 79 ASN C 81 GLY C 91 ILE C 92 SITE 3 AC5 16 ARG C 93 HIS C 106 SER C 109 TYR C 111 SITE 4 AC5 16 ARG C 138 LYS C 141 HOH C 303 HOH C 341 SITE 1 AC6 24 VAL A 29 LEU A 34 PHE A 64 LYS A 65 SITE 2 AC6 24 GLU A 66 PRO A 67 THR C 56 LEU C 57 SITE 3 AC6 24 GLY C 84 ARG C 85 THR C 86 SER C 87 SITE 4 AC6 24 ARG C 146 SER C 149 LEU C 150 HOH C 302 SITE 5 AC6 24 HOH C 305 HOH C 320 HOH C 323 HOH C 324 SITE 6 AC6 24 HOH C 338 HOH C 349 HOH C 375 HOH C 377 SITE 1 AC7 17 ARG B 5 GLU D 11 TYR D 77 ALA D 78 SITE 2 AC7 17 ALA D 79 ASN D 81 GLY D 91 ILE D 92 SITE 3 AC7 17 ARG D 93 HIS D 106 SER D 109 TYR D 111 SITE 4 AC7 17 ARG D 138 LYS D 141 HOH D 319 HOH D 322 SITE 5 AC7 17 HOH D 336 SITE 1 AC8 21 VAL B 29 LEU B 34 LEU B 63 PHE B 64 SITE 2 AC8 21 LYS B 65 GLU B 66 PRO B 67 THR D 56 SITE 3 AC8 21 LEU D 57 GLY D 84 ARG D 85 THR D 86 SITE 4 AC8 21 SER D 87 PRO D 122 ARG D 146 SER D 149 SITE 5 AC8 21 LEU D 150 HOH D 316 HOH D 338 HOH D 343 SITE 6 AC8 21 HOH D 364 CRYST1 152.800 152.800 152.800 90.00 90.00 90.00 P 21 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006545 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006545 0.00000