HEADER HYDROLASE 15-AUG-16 5T06 TITLE CRYSTAL STRUCTURE OF A PUTATIVE ACYL-COA THIOESTERASE EC709/ECK0725 TITLE 2 FROM ESCHERICHIA COLI IN COMPLEX WITH HEXANOYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA THIOESTER HYDROLASE YBGC; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ACYL-COA THIOESTERASE; COMPND 5 EC: 3.1.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: YBGC, Z0904, ECS0771; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG68SBPTEV KEYWDS ALPHA/BETA FOLD, HOTDOG FOLD, ACYL-COA, THIOESTERAE, HYDROLASE, KEYWDS 2 STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR N.WATANABE,P.J.STOGIOS,T.SKARINA,R.DI LEO,A.SAVCHENKO,W.F.ANDERSON, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 04-OCT-23 5T06 1 KEYWDS REVDAT 2 28-DEC-16 5T06 1 JRNL REVDAT 1 07-SEP-16 5T06 0 JRNL AUTH N.WATANABE,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS JRNL AUTH 2 DISEASES (CSGID) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE ACYL-COA THIOESTERASE JRNL TITL 2 EC709/ECK0725 FROM ESCHERICHIA COLI IN COMPLEX WITH JRNL TITL 3 HEXANOYL-COA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 48066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7855 - 4.8741 0.99 2859 162 0.1980 0.2096 REMARK 3 2 4.8741 - 3.8717 1.00 2781 146 0.1332 0.1866 REMARK 3 3 3.8717 - 3.3831 1.00 2735 146 0.1525 0.1713 REMARK 3 4 3.3831 - 3.0742 1.00 2716 139 0.1771 0.2058 REMARK 3 5 3.0742 - 2.8541 1.00 2729 109 0.1782 0.2519 REMARK 3 6 2.8541 - 2.6859 1.00 2718 120 0.1801 0.2338 REMARK 3 7 2.6859 - 2.5515 1.00 2679 144 0.1728 0.2200 REMARK 3 8 2.5515 - 2.4405 1.00 2682 136 0.1817 0.2374 REMARK 3 9 2.4405 - 2.3466 0.99 2691 139 0.1818 0.2513 REMARK 3 10 2.3466 - 2.2657 0.99 2629 146 0.1753 0.2070 REMARK 3 11 2.2657 - 2.1948 0.99 2652 142 0.1739 0.2310 REMARK 3 12 2.1948 - 2.1321 0.99 2669 130 0.1826 0.2323 REMARK 3 13 2.1321 - 2.0760 0.99 2658 138 0.1821 0.2221 REMARK 3 14 2.0760 - 2.0254 0.99 2680 115 0.1864 0.2488 REMARK 3 15 2.0254 - 1.9793 0.99 2628 145 0.1878 0.2661 REMARK 3 16 1.9793 - 1.9372 0.99 2592 156 0.1993 0.2612 REMARK 3 17 1.9372 - 1.8985 0.98 2626 129 0.2060 0.2244 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4359 REMARK 3 ANGLE : 1.104 5908 REMARK 3 CHIRALITY : 0.117 673 REMARK 3 PLANARITY : 0.005 741 REMARK 3 DIHEDRAL : 21.216 1657 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -11.8377 -3.1745 -2.5727 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1403 REMARK 3 T33: 0.1431 T12: -0.0056 REMARK 3 T13: -0.0178 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.0516 L22: 0.6475 REMARK 3 L33: 1.1310 L12: -0.2298 REMARK 3 L13: -0.1064 L23: -0.2550 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: -0.0240 S13: 0.0990 REMARK 3 S21: -0.0102 S22: -0.0092 S23: -0.0654 REMARK 3 S31: -0.0384 S32: 0.1083 S33: 0.0136 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48124 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.898 REMARK 200 RESOLUTION RANGE LOW (A) : 28.782 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S5U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M AMMONIUM CITRATE, REMARK 280 10MM HEXANOILCOA, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.87350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.80500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.38600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.80500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.87350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.38600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 GLN A 134 REMARK 465 VAL B 1 REMARK 465 ASN B 2 REMARK 465 THR B 3 REMARK 465 LYS B 133 REMARK 465 GLN B 134 REMARK 465 VAL C 1 REMARK 465 ASN C 2 REMARK 465 LEU C 117 REMARK 465 LYS C 118 REMARK 465 MET C 119 REMARK 465 LYS C 133 REMARK 465 GLN C 134 REMARK 465 VAL D 1 REMARK 465 ASN D 2 REMARK 465 THR D 3 REMARK 465 LYS D 133 REMARK 465 GLN D 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 370 O HOH C 390 2.10 REMARK 500 O LEU B 117 O HOH B 301 2.12 REMARK 500 OE2 GLU B 100 O HOH B 302 2.12 REMARK 500 O HOH B 309 O HOH B 391 2.12 REMARK 500 O HOH B 369 O HOH B 405 2.16 REMARK 500 O HOH B 375 O HOH B 378 2.18 REMARK 500 O HOH C 302 O HOH C 366 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 348 O HOH D 378 2455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL D 55 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 VAL D 55 N - CA - C ANGL. DEV. = 26.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 44 34.70 80.33 REMARK 500 ASP B 73 -5.09 81.14 REMARK 500 ARG B 86 -166.34 -106.67 REMARK 500 PHE C 45 62.16 -119.69 REMARK 500 ASP C 73 -5.11 78.99 REMARK 500 ASN C 98 -169.58 -101.21 REMARK 500 MET D 51 1.21 -69.33 REMARK 500 ARG D 54 16.18 83.86 REMARK 500 ARG D 86 -147.68 -118.32 REMARK 500 MET D 119 74.00 62.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 446 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 447 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 448 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH B 438 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 439 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B 440 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B 441 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH C 416 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH C 417 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH C 418 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH C 419 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH D 411 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH D 412 DISTANCE = 7.40 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HXC C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S5U RELATED DB: PDB REMARK 900 APOENZYME REMARK 900 RELATED ID: 5KL9 RELATED DB: PDB REMARK 900 COA BOUND REMARK 900 RELATED ID: 5T07 RELATED DB: PDB REMARK 900 RELATED ID: CSGID-IDP95663 RELATED DB: TARGETTRACK DBREF 5T06 A 2 134 UNP P0A8Z5 YBGC_ECO57 2 134 DBREF 5T06 B 2 134 UNP P0A8Z5 YBGC_ECO57 2 134 DBREF 5T06 C 2 134 UNP P0A8Z5 YBGC_ECO57 2 134 DBREF 5T06 D 2 134 UNP P0A8Z5 YBGC_ECO57 2 134 SEQADV 5T06 VAL A 1 UNP P0A8Z5 EXPRESSION TAG SEQADV 5T06 ALA A 18 UNP P0A8Z5 ASP 18 ENGINEERED MUTATION SEQADV 5T06 VAL B 1 UNP P0A8Z5 EXPRESSION TAG SEQADV 5T06 ALA B 18 UNP P0A8Z5 ASP 18 ENGINEERED MUTATION SEQADV 5T06 VAL C 1 UNP P0A8Z5 EXPRESSION TAG SEQADV 5T06 ALA C 18 UNP P0A8Z5 ASP 18 ENGINEERED MUTATION SEQADV 5T06 VAL D 1 UNP P0A8Z5 EXPRESSION TAG SEQADV 5T06 ALA D 18 UNP P0A8Z5 ASP 18 ENGINEERED MUTATION SEQRES 1 A 134 VAL ASN THR THR LEU PHE ARG TRP PRO VAL ARG VAL TYR SEQRES 2 A 134 TYR GLU ASP THR ALA ALA GLY GLY VAL VAL TYR HIS ALA SEQRES 3 A 134 SER TYR VAL ALA PHE TYR GLU ARG ALA ARG THR GLU MET SEQRES 4 A 134 LEU ARG HIS HIS HIS PHE SER GLN GLN ALA LEU MET ALA SEQRES 5 A 134 GLU ARG VAL ALA PHE VAL VAL ARG LYS MET THR VAL GLU SEQRES 6 A 134 TYR TYR ALA PRO ALA ARG LEU ASP ASP MET LEU GLU ILE SEQRES 7 A 134 GLN THR GLU ILE THR SER MET ARG GLY THR SER LEU VAL SEQRES 8 A 134 PHE THR GLN ARG ILE VAL ASN ALA GLU ASN THR LEU LEU SEQRES 9 A 134 ASN GLU ALA GLU VAL LEU VAL VAL CYS VAL ASP PRO LEU SEQRES 10 A 134 LYS MET LYS PRO ARG ALA LEU PRO LYS SER ILE VAL ALA SEQRES 11 A 134 GLU PHE LYS GLN SEQRES 1 B 134 VAL ASN THR THR LEU PHE ARG TRP PRO VAL ARG VAL TYR SEQRES 2 B 134 TYR GLU ASP THR ALA ALA GLY GLY VAL VAL TYR HIS ALA SEQRES 3 B 134 SER TYR VAL ALA PHE TYR GLU ARG ALA ARG THR GLU MET SEQRES 4 B 134 LEU ARG HIS HIS HIS PHE SER GLN GLN ALA LEU MET ALA SEQRES 5 B 134 GLU ARG VAL ALA PHE VAL VAL ARG LYS MET THR VAL GLU SEQRES 6 B 134 TYR TYR ALA PRO ALA ARG LEU ASP ASP MET LEU GLU ILE SEQRES 7 B 134 GLN THR GLU ILE THR SER MET ARG GLY THR SER LEU VAL SEQRES 8 B 134 PHE THR GLN ARG ILE VAL ASN ALA GLU ASN THR LEU LEU SEQRES 9 B 134 ASN GLU ALA GLU VAL LEU VAL VAL CYS VAL ASP PRO LEU SEQRES 10 B 134 LYS MET LYS PRO ARG ALA LEU PRO LYS SER ILE VAL ALA SEQRES 11 B 134 GLU PHE LYS GLN SEQRES 1 C 134 VAL ASN THR THR LEU PHE ARG TRP PRO VAL ARG VAL TYR SEQRES 2 C 134 TYR GLU ASP THR ALA ALA GLY GLY VAL VAL TYR HIS ALA SEQRES 3 C 134 SER TYR VAL ALA PHE TYR GLU ARG ALA ARG THR GLU MET SEQRES 4 C 134 LEU ARG HIS HIS HIS PHE SER GLN GLN ALA LEU MET ALA SEQRES 5 C 134 GLU ARG VAL ALA PHE VAL VAL ARG LYS MET THR VAL GLU SEQRES 6 C 134 TYR TYR ALA PRO ALA ARG LEU ASP ASP MET LEU GLU ILE SEQRES 7 C 134 GLN THR GLU ILE THR SER MET ARG GLY THR SER LEU VAL SEQRES 8 C 134 PHE THR GLN ARG ILE VAL ASN ALA GLU ASN THR LEU LEU SEQRES 9 C 134 ASN GLU ALA GLU VAL LEU VAL VAL CYS VAL ASP PRO LEU SEQRES 10 C 134 LYS MET LYS PRO ARG ALA LEU PRO LYS SER ILE VAL ALA SEQRES 11 C 134 GLU PHE LYS GLN SEQRES 1 D 134 VAL ASN THR THR LEU PHE ARG TRP PRO VAL ARG VAL TYR SEQRES 2 D 134 TYR GLU ASP THR ALA ALA GLY GLY VAL VAL TYR HIS ALA SEQRES 3 D 134 SER TYR VAL ALA PHE TYR GLU ARG ALA ARG THR GLU MET SEQRES 4 D 134 LEU ARG HIS HIS HIS PHE SER GLN GLN ALA LEU MET ALA SEQRES 5 D 134 GLU ARG VAL ALA PHE VAL VAL ARG LYS MET THR VAL GLU SEQRES 6 D 134 TYR TYR ALA PRO ALA ARG LEU ASP ASP MET LEU GLU ILE SEQRES 7 D 134 GLN THR GLU ILE THR SER MET ARG GLY THR SER LEU VAL SEQRES 8 D 134 PHE THR GLN ARG ILE VAL ASN ALA GLU ASN THR LEU LEU SEQRES 9 D 134 ASN GLU ALA GLU VAL LEU VAL VAL CYS VAL ASP PRO LEU SEQRES 10 D 134 LYS MET LYS PRO ARG ALA LEU PRO LYS SER ILE VAL ALA SEQRES 11 D 134 GLU PHE LYS GLN HET EDO A 201 4 HET EDO B 201 4 HET EDO B 202 4 HET HXC C 201 55 HET EDO C 202 4 HET EDO C 203 4 HET EDO D 201 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM HXC HEXANOYL-COENZYME A HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 6(C2 H6 O2) FORMUL 8 HXC C27 H46 N7 O17 P3 S FORMUL 12 HOH *520(H2 O) HELIX 1 AA1 TYR A 13 THR A 17 5 5 HELIX 2 AA2 TYR A 24 HIS A 43 1 20 HELIX 3 AA3 SER A 46 GLU A 53 1 8 HELIX 4 AA4 PRO A 125 PHE A 132 1 8 HELIX 5 AA5 TYR B 13 THR B 17 5 5 HELIX 6 AA6 TYR B 24 HIS B 43 1 20 HELIX 7 AA7 SER B 46 GLU B 53 1 8 HELIX 8 AA8 PRO B 125 PHE B 132 1 8 HELIX 9 AA9 TYR C 13 THR C 17 5 5 HELIX 10 AB1 TYR C 24 HIS C 43 1 20 HELIX 11 AB2 SER C 46 GLU C 53 1 8 HELIX 12 AB3 PRO C 125 PHE C 132 1 8 HELIX 13 AB4 TYR D 13 THR D 17 5 5 HELIX 14 AB5 TYR D 24 HIS D 43 1 20 HELIX 15 AB6 SER D 46 ALA D 52 1 7 HELIX 16 AB7 PRO D 125 PHE D 132 1 8 SHEET 1 AA1 5 PHE A 6 ARG A 11 0 SHEET 2 AA1 5 MET A 75 ARG A 86 -1 O ILE A 78 N TRP A 8 SHEET 3 AA1 5 SER A 89 VAL A 97 -1 O ARG A 95 N GLN A 79 SHEET 4 AA1 5 LEU A 103 ASP A 115 -1 O ALA A 107 N GLN A 94 SHEET 5 AA1 5 LYS A 120 PRO A 121 -1 O LYS A 120 N ASP A 115 SHEET 1 AA210 PHE A 6 ARG A 11 0 SHEET 2 AA210 MET A 75 ARG A 86 -1 O ILE A 78 N TRP A 8 SHEET 3 AA210 SER A 89 VAL A 97 -1 O ARG A 95 N GLN A 79 SHEET 4 AA210 LEU A 103 ASP A 115 -1 O ALA A 107 N GLN A 94 SHEET 5 AA210 ALA A 56 TYR A 66 -1 N ARG A 60 O LEU A 110 SHEET 6 AA210 ALA C 56 TYR C 66 -1 O VAL C 64 N MET A 62 SHEET 7 AA210 LEU C 103 VAL C 114 -1 O LEU C 110 N LYS C 61 SHEET 8 AA210 SER C 89 VAL C 97 -1 N GLN C 94 O ALA C 107 SHEET 9 AA210 MET C 75 ARG C 86 -1 N GLU C 81 O THR C 93 SHEET 10 AA210 PHE C 6 ARG C 11 -1 N VAL C 10 O LEU C 76 SHEET 1 AA310 PHE B 6 ARG B 11 0 SHEET 2 AA310 MET B 75 MET B 85 -1 O LEU B 76 N VAL B 10 SHEET 3 AA310 SER B 89 VAL B 97 -1 O ARG B 95 N GLN B 79 SHEET 4 AA310 LEU B 103 VAL B 114 -1 O VAL B 111 N LEU B 90 SHEET 5 AA310 ALA B 56 TYR B 66 -1 N GLU B 65 O GLU B 106 SHEET 6 AA310 ALA D 56 TYR D 66 -1 O MET D 62 N VAL B 64 SHEET 7 AA310 LEU D 103 VAL D 114 -1 O VAL D 112 N VAL D 58 SHEET 8 AA310 SER D 89 VAL D 97 -1 N LEU D 90 O VAL D 111 SHEET 9 AA310 MET D 75 MET D 85 -1 N GLN D 79 O ARG D 95 SHEET 10 AA310 PHE D 6 ARG D 11 -1 N VAL D 10 O LEU D 76 SITE 1 AC1 5 VAL A 97 ASN A 98 ASN A 101 HOH A 315 SITE 2 AC1 5 HOH A 341 SITE 1 AC2 4 TYR B 24 HIS B 25 HOH B 333 HOH B 367 SITE 1 AC3 4 GLU B 33 ARG B 36 VAL B 59 HOH B 311 SITE 1 AC4 26 VAL A 58 VAL A 59 ARG A 60 MET A 119 SITE 2 AC4 26 PRO A 121 TYR B 14 ALA B 49 ALA B 52 SITE 3 AC4 26 GLU B 53 SER B 127 HOH B 362 GLY C 20 SITE 4 AC4 26 VAL C 23 TYR C 24 HIS C 25 TYR C 66 SITE 5 AC4 26 TYR C 67 ALA C 68 PRO C 69 THR C 102 SITE 6 AC4 26 EDO C 202 HOH C 307 HOH C 325 HOH C 330 SITE 7 AC4 26 HOH C 333 HOH C 343 SITE 1 AC5 3 HIS B 43 HIS B 44 HXC C 201 SITE 1 AC6 4 GLU C 33 ARG C 36 VAL C 59 HOH C 337 SITE 1 AC7 5 GLU D 33 ARG D 36 VAL D 59 VAL D 111 SITE 2 AC7 5 HOH D 301 CRYST1 63.747 96.772 97.610 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015687 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010245 0.00000