HEADER CALCIUM-BINDING PROTEIN/HORMONE RECEPTOR16-AUG-16 5T0X TITLE SOLUTION NMR-DERIVED STRUCTURE OF CALMODULIN BOUND WITH ER ALPHA TITLE 2 PEPTIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAM; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ESTROGEN RECEPTOR PEPTIDE; COMPND 8 CHAIN: B, C; COMPND 9 FRAGMENT: UNP RESIDUES 287-305; COMPND 10 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 11 GROUP A MEMBER 1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: CALM1, CALM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ESR1, ESR, NR3A1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALMODULIN, ESTROGEN RECEPTOR, COMPLEX, CALCIUM-BINDING PROTEIN- KEYWDS 2 HORMONE RECEPTOR COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.ZHANG,J.B.AMES REVDAT 1 15-FEB-17 5T0X 0 JRNL AUTH Y.ZHANG,J.B.AMES JRNL TITL SOLUTION NMR-DERIVED STRUCTURE OF CALMODULIN BOUND WITH ER JRNL TITL 2 ALPHA PEPTIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, HADDOCK REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223449. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 15N] 15N-LABELED REMARK 210 CAM/ERALPHA; 1 MM [U-99% 13C; U- REMARK 210 99% 15N] 13C/15N-CAM/ERALPHA; 1 REMARK 210 MM [U-99% 13C; U-99% 15N] 13C/ REMARK 210 15N-CAM/ERALPHA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : 1 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 54 HZ3 LYS A 75 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 -169.08 62.22 REMARK 500 1 SER A 17 -64.11 -129.26 REMARK 500 1 LYS A 21 -50.78 77.16 REMARK 500 1 LEU A 39 59.36 -114.01 REMARK 500 1 ASN A 42 -51.17 -137.26 REMARK 500 1 ASP A 56 94.83 -68.87 REMARK 500 1 MET A 72 31.21 -96.03 REMARK 500 1 ALA A 73 -64.25 -148.32 REMARK 500 1 LYS A 75 75.00 -100.56 REMARK 500 1 ASP A 80 17.32 -178.22 REMARK 500 1 GLU A 83 -86.91 -25.04 REMARK 500 1 LYS A 94 -76.33 63.41 REMARK 500 1 SER A 101 -60.81 -92.94 REMARK 500 1 ALA A 102 -48.25 170.22 REMARK 500 1 SER B 294 -70.38 -57.96 REMARK 500 1 SER C 294 -72.09 -56.03 REMARK 500 2 ASP A 2 -178.35 69.28 REMARK 500 2 LYS A 21 -36.58 70.71 REMARK 500 2 ASN A 42 -49.92 -158.52 REMARK 500 2 MET A 71 -52.13 -125.21 REMARK 500 2 ASP A 80 31.93 -164.14 REMARK 500 2 GLU A 82 31.32 -91.53 REMARK 500 2 GLU A 83 -84.73 -29.61 REMARK 500 2 LYS A 94 -72.36 64.98 REMARK 500 2 ALA A 102 -48.41 171.42 REMARK 500 2 SER C 294 -70.42 -52.97 REMARK 500 3 ASP A 2 86.65 64.68 REMARK 500 3 LYS A 21 -33.56 71.75 REMARK 500 3 GLN A 41 58.57 39.83 REMARK 500 3 ASN A 42 -46.71 -162.87 REMARK 500 3 ASP A 56 89.87 -67.70 REMARK 500 3 ALA A 73 -60.70 -93.53 REMARK 500 3 THR A 79 114.86 -166.72 REMARK 500 3 ASP A 80 22.80 -172.11 REMARK 500 3 GLU A 82 52.70 -91.02 REMARK 500 3 GLU A 83 -99.90 -30.21 REMARK 500 3 LYS A 94 -12.74 69.65 REMARK 500 3 ASP A 95 -97.00 -145.01 REMARK 500 3 ASN A 97 -18.21 -161.24 REMARK 500 3 ALA A 102 -58.69 -173.51 REMARK 500 3 GLU A 104 -85.69 -48.74 REMARK 500 3 ALA B 289 -72.58 -29.20 REMARK 500 3 ALA C 288 1.04 -157.46 REMARK 500 3 SER C 294 -70.21 -56.72 REMARK 500 4 ASP A 2 179.06 68.10 REMARK 500 4 ASP A 22 -19.84 -144.58 REMARK 500 4 ASN A 42 -47.41 -167.95 REMARK 500 4 ASP A 56 96.10 -67.49 REMARK 500 4 LYS A 75 62.07 -107.41 REMARK 500 4 ASP A 80 -66.24 -165.68 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 20 OD2 52.2 REMARK 620 3 ASP A 22 OD1 131.2 82.1 REMARK 620 4 ASP A 22 OD2 92.5 74.0 54.7 REMARK 620 5 ASP A 24 OD2 101.6 75.9 79.7 127.6 REMARK 620 6 THR A 26 O 75.7 111.3 146.3 157.3 74.4 REMARK 620 7 GLU A 31 OE1 113.7 159.5 104.4 93.7 124.1 74.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 58 OD1 80.9 REMARK 620 3 ASP A 58 OD2 131.8 53.4 REMARK 620 4 ASN A 60 OD1 73.5 70.8 100.9 REMARK 620 5 THR A 62 O 77.2 135.5 145.4 66.0 REMARK 620 6 ASP A 64 OD2 155.0 117.8 71.8 96.2 77.8 REMARK 620 7 GLU A 67 OE1 94.1 144.3 113.6 141.7 76.0 79.9 REMARK 620 8 GLU A 67 OE2 86.5 89.2 79.3 153.5 127.1 108.8 55.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 O REMARK 620 2 ASP A 93 OD1 67.0 REMARK 620 3 ASP A 95 OD2 68.7 102.8 REMARK 620 4 ASN A 97 OD1 127.8 79.3 82.3 REMARK 620 5 TYR A 99 O 149.5 101.2 141.5 73.2 REMARK 620 6 GLU A 104 OE1 88.6 143.6 91.9 136.3 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 129 OD1 REMARK 620 2 ASP A 131 OD2 86.3 REMARK 620 3 ASP A 133 OD1 80.8 109.7 REMARK 620 4 ASP A 133 OD2 101.4 71.5 45.2 REMARK 620 5 GLN A 135 O 100.3 171.8 76.5 111.6 REMARK 620 6 GLU A 140 OE1 131.3 90.2 144.3 123.2 81.8 REMARK 620 7 GLU A 140 OE2 77.3 80.5 155.1 152.0 96.0 54.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30156 RELATED DB: BMRB REMARK 900 SOLUTION NMR-DERIVED STRUCTURE OF CALMODULIN BOUND WITH ER ALPHA REMARK 900 PEPTIDES DBREF 5T0X A 1 148 UNP P62155 CALM_XENLA 2 149 DBREF 5T0X B 287 305 UNP P03372 ESR1_HUMAN 287 305 DBREF 5T0X C 287 305 UNP P03372 ESR1_HUMAN 287 305 SEQRES 1 A 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 A 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 A 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 A 148 ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE SEQRES 6 A 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 A 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 8 A 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 9 A 148 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 10 A 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 11 A 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 12 A 148 MET MET THR ALA LYS SEQRES 1 B 19 ARG ALA ALA ASN LEU TRP PRO SER PRO LEU MET ILE LYS SEQRES 2 B 19 ARG SER LYS LYS ASN SER SEQRES 1 C 19 ARG ALA ALA ASN LEU TRP PRO SER PRO LEU MET ILE LYS SEQRES 2 C 19 ARG SER LYS LYS ASN SER HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HETNAM CA CALCIUM ION FORMUL 4 CA 4(CA 2+) HELIX 1 AA1 GLN A 8 PHE A 16 5 9 HELIX 2 AA2 THR A 28 LEU A 39 1 12 HELIX 3 AA3 THR A 44 GLU A 54 1 11 HELIX 4 AA4 ASP A 64 MET A 72 1 9 HELIX 5 AA5 GLU A 82 LYS A 94 1 13 HELIX 6 AA6 GLU A 104 MET A 109 1 6 HELIX 7 AA7 GLU A 119 ASP A 129 1 11 HELIX 8 AA8 ASN A 137 GLN A 143 1 7 HELIX 9 AA9 ALA B 288 TRP B 292 1 5 HELIX 10 AB1 TRP B 292 SER B 305 1 14 HELIX 11 AB2 ARG C 287 LEU C 291 5 5 HELIX 12 AB3 TRP C 292 SER C 305 1 14 LINK OD1 ASP A 20 CA CA A 201 1555 1555 2.24 LINK OD2 ASP A 20 CA CA A 201 1555 1555 2.64 LINK OD1 ASP A 22 CA CA A 201 1555 1555 2.44 LINK OD2 ASP A 22 CA CA A 201 1555 1555 2.27 LINK OD2 ASP A 24 CA CA A 201 1555 1555 2.20 LINK O THR A 26 CA CA A 201 1555 1555 2.46 LINK OE1 GLU A 31 CA CA A 201 1555 1555 2.22 LINK OD1 ASP A 56 CA CA A 202 1555 1555 2.23 LINK OD1 ASP A 58 CA CA A 202 1555 1555 2.41 LINK OD2 ASP A 58 CA CA A 202 1555 1555 2.41 LINK OD1 ASN A 60 CA CA A 202 1555 1555 2.53 LINK O THR A 62 CA CA A 202 1555 1555 2.46 LINK OD2 ASP A 64 CA CA A 202 1555 1555 2.28 LINK OE1 GLU A 67 CA CA A 202 1555 1555 2.35 LINK OE2 GLU A 67 CA CA A 202 1555 1555 2.36 LINK O ASP A 93 CA CA A 203 1555 1555 2.76 LINK OD1 ASP A 93 CA CA A 203 1555 1555 2.23 LINK OD2 ASP A 95 CA CA A 203 1555 1555 2.23 LINK OD1 ASN A 97 CA CA A 203 1555 1555 2.33 LINK O TYR A 99 CA CA A 203 1555 1555 2.39 LINK OE1 GLU A 104 CA CA A 203 1555 1555 2.22 LINK OD1 ASP A 129 CA CA A 204 1555 1555 2.25 LINK OD2 ASP A 131 CA CA A 204 1555 1555 2.24 LINK OD1 ASP A 133 CA CA A 204 1555 1555 2.37 LINK OD2 ASP A 133 CA CA A 204 1555 1555 3.06 LINK O GLN A 135 CA CA A 204 1555 1555 2.34 LINK OE1 GLU A 140 CA CA A 204 1555 1555 2.36 LINK OE2 GLU A 140 CA CA A 204 1555 1555 2.40 SITE 1 AC1 5 ASP A 20 ASP A 22 ASP A 24 THR A 26 SITE 2 AC1 5 GLU A 31 SITE 1 AC2 6 ASP A 56 ASP A 58 ASN A 60 THR A 62 SITE 2 AC2 6 ASP A 64 GLU A 67 SITE 1 AC3 5 ASP A 93 ASP A 95 ASN A 97 TYR A 99 SITE 2 AC3 5 GLU A 104 SITE 1 AC4 5 ASP A 129 ASP A 131 ASP A 133 GLN A 135 SITE 2 AC4 5 GLU A 140 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1