HEADER TRANSFERASE 19-AUG-16 5T1N TITLE SOLUTION-STATE NMR STRUCTURAL ENSEMBLE OF NPR (1-85) REFINED WITH RDCS TITLE 2 AND PCS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOCARRIER PROTEIN NPR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NITROGEN-RELATED HPR; COMPND 5 EC: 2.7.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: PTSO, Z4569, ECS4085; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETDUET1 KEYWDS PTSNTR, PHOSPHOTRANSFER, HPR-LIKE, BACTERIAL, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.STRICKLAND,G.WANG,A.PETERKOFSKY,N.TJANDRA REVDAT 7 01-MAY-24 5T1N 1 REMARK REVDAT 6 04-DEC-19 5T1N 1 REMARK REVDAT 5 01-NOV-17 5T1N 1 REMARK REVDAT 4 26-JUL-17 5T1N 1 COMPND REMARK REVDAT 3 21-DEC-16 5T1N 1 JRNL REVDAT 2 07-DEC-16 5T1N 1 JRNL REVDAT 1 16-NOV-16 5T1N 0 JRNL AUTH M.STRICKLAND,A.M.STANLEY,G.WANG,I.BOTOS,C.D.SCHWIETERS, JRNL AUTH 2 S.K.BUCHANAN,A.PETERKOFSKY,N.TJANDRA JRNL TITL STRUCTURE OF THE NPR:EIN(NTR) COMPLEX: MECHANISM FOR JRNL TITL 2 SPECIFICITY IN PARALOGOUS PHOSPHOTRANSFERASE SYSTEMS. JRNL REF STRUCTURE V. 24 2127 2016 JRNL REFN ISSN 1878-4186 JRNL PMID 27839951 JRNL DOI 10.1016/J.STR.2016.10.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.37.7, X-PLOR NIH 2.37.7 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE WAS REFINED USING PDB ID 5T17 REMARK 3 AS A STARTING STRUCTURE. REMARK 4 REMARK 4 5T1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223065. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308; 300 REMARK 210 PH : 7; 7.5 REMARK 210 IONIC STRENGTH : 25; 108 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] NPR, 25 MM REMARK 210 TRIS, 93% H2O/7% D2O; 0.6 MM [U- REMARK 210 13C; U-15N; U-2H] NPR, 10 MM REMARK 210 TRIS, 100 MM SODIUM CHLORIDE, REMARK 210 0.5 MM EDTA, 93% H2O/7% D2O; 0.6 REMARK 210 MM [U-13C; U-15N; U-2H] NPR, 10 REMARK 210 MM TRIS, 100 MM SODIUM CHLORIDE, REMARK 210 0.5 MM EDTA, 93% H2O/7% D2O; 0.6 REMARK 210 MM [U-15N; U-2H] NPR, 10 MM TRIS, REMARK 210 100 MM SODIUM CHLORIDE, 0.5 MM REMARK 210 EDTA, 93% H2O/7% D2O; 0.6 MM [U- REMARK 210 15N; U-2H] NPR, 10 MM TRIS, 100 REMARK 210 MM SODIUM CHLORIDE, 0.5 MM EDTA, REMARK 210 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 4D HNHC NOESY; 3D HNCACB; REMARK 210 2D IPAP; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANALYSIS 2.4.2, PIPP, VNMR, REMARK 210 TOPSPIN 3.0, NMRPIPE 8.2, TALOS- REMARK 210 N 4.12, GAUSSIAN 9 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER ACCORDING TO GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 84 HG SER A 85 1.39 REMARK 500 O ARG A 18 H LYS A 22 1.53 REMARK 500 O ARG A 37 H GLU A 64 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 12 96.56 -169.19 REMARK 500 1 HIS A 16 -137.06 57.53 REMARK 500 1 ALA A 32 158.09 170.97 REMARK 500 1 LYS A 59 97.27 -69.37 REMARK 500 1 GLU A 72 -35.80 -38.25 REMARK 500 2 LYS A 12 -179.36 99.77 REMARK 500 2 LEU A 13 -1.43 -54.98 REMARK 500 2 ALA A 32 153.34 172.53 REMARK 500 2 ALA A 44 77.20 -100.40 REMARK 500 2 ALA A 46 3.78 -66.58 REMARK 500 2 ALA A 58 29.29 -74.52 REMARK 500 3 ASN A 11 26.67 85.36 REMARK 500 3 LYS A 12 -161.77 86.94 REMARK 500 3 HIS A 16 -80.31 53.19 REMARK 500 3 ALA A 17 3.80 -170.94 REMARK 500 3 ALA A 32 151.77 171.75 REMARK 500 3 GLU A 45 121.03 -37.14 REMARK 500 3 ALA A 58 31.03 -88.08 REMARK 500 4 ASN A 11 37.47 79.78 REMARK 500 4 LYS A 12 -174.15 80.80 REMARK 500 4 ALA A 32 152.57 170.75 REMARK 500 4 GLU A 40 0.47 -68.07 REMARK 500 4 ASN A 47 1.12 -64.34 REMARK 500 4 ALA A 58 29.68 -79.88 REMARK 500 5 THR A 2 129.96 62.87 REMARK 500 5 ASN A 11 12.14 85.45 REMARK 500 5 LYS A 12 179.29 101.49 REMARK 500 5 LEU A 13 -4.70 -53.00 REMARK 500 5 MET A 15 -73.82 -56.49 REMARK 500 5 ALA A 17 -4.28 72.48 REMARK 500 5 ALA A 32 153.26 169.96 REMARK 500 5 ALA A 46 -1.81 -58.98 REMARK 500 5 ALA A 58 30.19 -89.32 REMARK 500 6 ASN A 11 26.88 85.76 REMARK 500 6 LYS A 12 -154.75 85.13 REMARK 500 6 HIS A 16 -77.53 176.21 REMARK 500 6 ALA A 17 -10.01 -147.27 REMARK 500 6 ALA A 32 155.16 172.99 REMARK 500 6 ALA A 46 0.72 -69.79 REMARK 500 6 LYS A 59 101.51 -53.37 REMARK 500 7 ASN A 11 32.24 84.05 REMARK 500 7 LYS A 12 -178.53 88.66 REMARK 500 7 LEU A 13 22.56 -68.66 REMARK 500 7 HIS A 16 -112.50 47.07 REMARK 500 7 ALA A 32 155.73 163.03 REMARK 500 7 ALA A 44 47.33 -84.31 REMARK 500 7 GLU A 45 119.91 -39.52 REMARK 500 7 ASN A 47 33.95 -74.53 REMARK 500 8 THR A 10 34.83 -142.14 REMARK 500 8 ASN A 11 11.36 109.54 REMARK 500 REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30158 RELATED DB: BMRB REMARK 900 SOLUTION-STATE NMR STRUCTURAL ENSEMBLE OF NPR (1-85) REFINED WITH REMARK 900 RDCS AND PCS DBREF 5T1N A 1 85 UNP P0A9N2 PTSO_ECO57 1 85 SEQRES 1 A 85 MET THR VAL LYS GLN THR VAL GLU ILE THR ASN LYS LEU SEQRES 2 A 85 GLY MET HIS ALA ARG PRO ALA MET LYS LEU PHE GLU LEU SEQRES 3 A 85 MET GLN GLY PHE ASP ALA GLU VAL LEU LEU ARG ASN ASP SEQRES 4 A 85 GLU GLY THR GLU ALA GLU ALA ASN SER VAL ILE ALA LEU SEQRES 5 A 85 LEU MET LEU ASP SER ALA LYS GLY ARG GLN ILE GLU VAL SEQRES 6 A 85 GLU ALA THR GLY PRO GLN GLU GLU GLU ALA LEU ALA ALA SEQRES 7 A 85 VAL ILE ALA LEU PHE ASN SER HELIX 1 AA1 ALA A 17 PHE A 30 1 14 HELIX 2 AA2 SER A 48 SER A 57 1 10 HELIX 3 AA3 GLN A 71 ASN A 84 1 14 SHEET 1 AA1 4 VAL A 3 GLU A 8 0 SHEET 2 AA1 4 GLN A 62 THR A 68 -1 O ALA A 67 N VAL A 3 SHEET 3 AA1 4 GLU A 33 ARG A 37 -1 N LEU A 35 O GLU A 66 SHEET 4 AA1 4 GLU A 43 GLU A 45 -1 O ALA A 44 N LEU A 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1