HEADER IMMUNE SYSTEM 23-AUG-16 5T29 TITLE CRYSTAL STRUCTURE OF 10E8 FAB LIGHT CHAIN MUTANT3, AGAINST THE MPER TITLE 2 REGION OF THE HIV-1 ENV, IN COMPLEX WITH THE MPER EPITOPE SCAFFOLD TITLE 3 T117V2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY 10E8 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY 10E8 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 10E8 EPITOPE SCAFFOLD T117V2; COMPND 11 CHAIN: O; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: IGHV3-15*05; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK 293S; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHCMV3; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: IGLV3-19*01; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293S; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PHCMV3; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 EXPRESSION_SYSTEM_STRAIN: BL-21 STAR; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 26 EXPRESSION_SYSTEM_PLASMID: PET29 KEYWDS HIV-1 GP41 MPER, 10E8 FAB, LIPID MEMBRANE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.IRIMIA,I.A.WILSON REVDAT 4 04-OCT-23 5T29 1 REMARK REVDAT 3 11-DEC-19 5T29 1 REMARK REVDAT 2 20-SEP-17 5T29 1 REMARK REVDAT 1 08-MAR-17 5T29 0 JRNL AUTH A.IRIMIA,A.M.SERRA,A.SARKAR,R.JACAK,O.KALYUZHNIY,D.SOK, JRNL AUTH 2 K.L.SAYE-FRANCISCO,T.SCHIFFNER,R.TINGLE,M.KUBITZ,Y.ADACHI, JRNL AUTH 3 R.L.STANFIELD,M.C.DELLER,D.R.BURTON,W.R.SCHIEF,I.A.WILSON JRNL TITL LIPID INTERACTIONS AND ANGLE OF APPROACH TO THE HIV-1 VIRAL JRNL TITL 2 MEMBRANE OF BROADLY NEUTRALIZING ANTIBODY 10E8: INSIGHTS FOR JRNL TITL 3 VACCINE AND THERAPEUTIC DESIGN. JRNL REF PLOS PATHOG. V. 13 06212 2017 JRNL REFN ESSN 1553-7374 JRNL PMID 28225819 JRNL DOI 10.1371/JOURNAL.PPAT.1006212 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 36187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5658 - 4.7578 0.91 2716 144 0.1490 0.1809 REMARK 3 2 4.7578 - 3.7776 0.90 2620 138 0.1333 0.1607 REMARK 3 3 3.7776 - 3.3005 0.94 2743 144 0.1644 0.1916 REMARK 3 4 3.3005 - 2.9989 0.95 2742 144 0.1770 0.2189 REMARK 3 5 2.9989 - 2.7840 0.91 2621 138 0.1935 0.2598 REMARK 3 6 2.7840 - 2.6199 0.94 2731 144 0.1960 0.2414 REMARK 3 7 2.6199 - 2.4887 0.95 2703 143 0.2041 0.2368 REMARK 3 8 2.4887 - 2.3804 0.95 2766 145 0.2178 0.2830 REMARK 3 9 2.3804 - 2.2888 0.92 2638 138 0.2229 0.2935 REMARK 3 10 2.2888 - 2.2098 0.91 2623 139 0.2304 0.2679 REMARK 3 11 2.2098 - 2.1407 0.91 2615 137 0.2276 0.2898 REMARK 3 12 2.1407 - 2.0796 0.90 2569 136 0.2383 0.3127 REMARK 3 13 2.0796 - 2.0248 0.81 2290 120 0.2478 0.3059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4663 REMARK 3 ANGLE : 1.007 6387 REMARK 3 CHIRALITY : 0.041 721 REMARK 3 PLANARITY : 0.005 831 REMARK 3 DIHEDRAL : 13.120 1618 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND ((RESSEQ 1:131)) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9046 10.2312 106.4093 REMARK 3 T TENSOR REMARK 3 T11: 0.4107 T22: 0.2972 REMARK 3 T33: 0.2908 T12: -0.0310 REMARK 3 T13: 0.0463 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 3.9235 L22: 2.4021 REMARK 3 L33: 2.9087 L12: 0.8694 REMARK 3 L13: 2.4540 L23: 0.7288 REMARK 3 S TENSOR REMARK 3 S11: 0.1832 S12: -0.1439 S13: -0.2848 REMARK 3 S21: -0.3147 S22: 0.0204 S23: -0.1619 REMARK 3 S31: 0.5814 S32: 0.0773 S33: -0.1818 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND ((RESSEQ 132:233)) REMARK 3 ORIGIN FOR THE GROUP (A): -38.7072 17.7001 81.8405 REMARK 3 T TENSOR REMARK 3 T11: 0.3745 T22: 0.1790 REMARK 3 T33: 0.2765 T12: -0.0270 REMARK 3 T13: -0.0257 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 2.6406 L22: 4.1363 REMARK 3 L33: 3.1198 L12: -0.3749 REMARK 3 L13: -0.1350 L23: -0.0107 REMARK 3 S TENSOR REMARK 3 S11: 0.1787 S12: 0.2093 S13: 0.1694 REMARK 3 S21: -0.2234 S22: -0.1187 S23: 0.0234 REMARK 3 S31: -0.2106 S32: 0.0785 S33: -0.0140 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND ((RESSEQ 1:109)) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2126 29.9895 111.6710 REMARK 3 T TENSOR REMARK 3 T11: 0.1863 T22: 0.3679 REMARK 3 T33: 0.2548 T12: -0.0476 REMARK 3 T13: 0.0207 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 3.1876 L22: 4.4325 REMARK 3 L33: 4.7931 L12: -1.3885 REMARK 3 L13: 0.3252 L23: -1.9781 REMARK 3 S TENSOR REMARK 3 S11: -0.1527 S12: -0.0585 S13: 0.2997 REMARK 3 S21: -0.1342 S22: 0.2626 S23: -0.1236 REMARK 3 S31: -0.2718 S32: -0.2782 S33: -0.1224 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND ((RESSEQ 110:212)) REMARK 3 ORIGIN FOR THE GROUP (A): -49.8604 27.7922 88.4232 REMARK 3 T TENSOR REMARK 3 T11: 0.3469 T22: 0.1945 REMARK 3 T33: 0.2814 T12: 0.0037 REMARK 3 T13: -0.0048 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 3.1367 L22: 3.6329 REMARK 3 L33: 2.9855 L12: 0.3110 REMARK 3 L13: 0.4706 L23: 0.5849 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: -0.0463 S13: -0.0308 REMARK 3 S21: 0.1411 S22: -0.0793 S23: 0.2805 REMARK 3 S31: -0.0277 S32: -0.0494 S33: 0.1565 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'O' REMARK 3 ORIGIN FOR THE GROUP (A): 12.7115 18.3295 119.5666 REMARK 3 T TENSOR REMARK 3 T11: 0.4028 T22: 0.8160 REMARK 3 T33: 0.8346 T12: 0.1339 REMARK 3 T13: 0.0582 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 3.8362 L22: 2.8269 REMARK 3 L33: 2.6388 L12: 1.8666 REMARK 3 L13: -0.0344 L23: -0.2865 REMARK 3 S TENSOR REMARK 3 S11: -0.3598 S12: -0.0494 S13: -0.9714 REMARK 3 S21: -0.0310 S22: -0.0556 S23: -0.9438 REMARK 3 S31: 0.2424 S32: 0.8594 S33: 0.2169 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE LIGAND NAMED PEG IS A FRAGMENT OF REMARK 3 POLYETHYLENE GLYCOL 600 FROM THE CRYSTALLIZATION BUFFER REMARK 4 REMARK 4 5T29 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2.3.8 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2.3.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.025 REMARK 200 RESOLUTION RANGE LOW (A) : 36.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4G6F, 3LF6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PO4-CITRATE PH 4.2, 40% PEG 600, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.43950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.48600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.43950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.48600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 SER L 1 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 465 ASN O 7 REMARK 465 ALA O 8 REMARK 465 MET O 9 REMARK 465 GLN O 10 REMARK 465 GLU O 25 REMARK 465 PRO O 104 REMARK 465 ASP O 105 REMARK 465 SER O 160 REMARK 465 GLU O 161 REMARK 465 LEU O 162 REMARK 465 GLU O 163 REMARK 465 HIS O 164 REMARK 465 HIS O 165 REMARK 465 HIS O 166 REMARK 465 HIS O 167 REMARK 465 HIS O 168 REMARK 465 HIS O 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU H 1 CB CG CD OE1 OE2 REMARK 470 LYS H 201 CE NZ REMARK 470 ARG H 210 NE CZ NH1 NH2 REMARK 470 TYR L 2 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS L 93 CE NZ REMARK 470 LYS L 130 CD CE NZ REMARK 470 LYS L 150 CE NZ REMARK 470 LYS L 157 CD CE NZ REMARK 470 GLU L 184 CG CD OE1 OE2 REMARK 470 LYS L 187 CD CE NZ REMARK 470 ARG L 190 CG CD NE CZ NH1 NH2 REMARK 470 ARG O 15 CG CD NE CZ NH1 NH2 REMARK 470 ARG O 16 CG CD NE CZ NH1 NH2 REMARK 470 ARG O 20 CG CD NE CZ NH1 NH2 REMARK 470 LYS O 24 CD CE NZ REMARK 470 ASP O 30 CG OD1 OD2 REMARK 470 LEU O 39 CG CD1 CD2 REMARK 470 ARG O 56 CG CD NE CZ NH1 NH2 REMARK 470 GLU O 67 CG CD OE1 OE2 REMARK 470 ARG O 82 CG CD NE CZ NH1 NH2 REMARK 470 GLU O 93 CG CD OE1 OE2 REMARK 470 GLU O 98 CG CD OE1 OE2 REMARK 470 GLU O 103 CG CD OE1 OE2 REMARK 470 ARG O 110 CG CD NE CZ NH1 NH2 REMARK 470 GLN O 142 CG CD OE1 NE2 REMARK 470 ASP O 149 CG OD1 OD2 REMARK 470 GLN O 153 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO H 100G 45.91 -99.93 REMARK 500 ASP H 144 66.79 62.73 REMARK 500 THR H 191 -80.67 -89.94 REMARK 500 GLU L 3 83.89 73.39 REMARK 500 ASP L 52 45.30 -160.54 REMARK 500 SER L 90 -167.53 -165.45 REMARK 500 ASP L 152 -112.84 54.55 REMARK 500 PRO L 209 84.10 -60.12 REMARK 500 ILE O 12 -73.94 -127.48 REMARK 500 HIS O 13 112.97 63.31 REMARK 500 PHE O 14 85.61 -166.08 REMARK 500 ASP O 48 48.79 -101.68 REMARK 500 PRO O 65 88.40 -69.58 REMARK 500 ALA O 116 71.48 -115.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU L 3 LEU L 4 145.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG L 302 DBREF 5T29 H 1 218 PDB 5T29 5T29 1 218 DBREF 5T29 L 1 213 PDB 5T29 5T29 1 213 DBREF 5T29 O 7 169 PDB 5T29 5T29 7 169 SEQRES 1 H 236 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 236 PRO GLY GLY SER LEU ARG LEU SER CYS SER ALA SER GLY SEQRES 3 H 236 PHE ASP PHE ASP ASN ALA TRP MET THR TRP VAL ARG GLN SEQRES 4 H 236 PRO PRO GLY LYS GLY LEU GLU TRP VAL GLY ARG ILE THR SEQRES 5 H 236 GLY PRO GLY GLU GLY TRP SER VAL ASP TYR ALA ALA PRO SEQRES 6 H 236 VAL GLU GLY ARG PHE THR ILE SER ARG LEU ASN SER ILE SEQRES 7 H 236 ASN PHE LEU TYR LEU GLU MET ASN ASN LEU ARG MET GLU SEQRES 8 H 236 ASP SER GLY LEU TYR PHE CYS ALA ARG THR GLY LYS TYR SEQRES 9 H 236 TYR ASP PHE TRP SER GLY TYR PRO PRO GLY GLU GLU TYR SEQRES 10 H 236 PHE GLN ASP TRP GLY ARG GLY THR LEU VAL THR VAL SER SEQRES 11 H 236 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 12 H 236 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 13 H 236 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 14 H 236 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 15 H 236 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 16 H 236 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 17 H 236 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 18 H 236 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 19 H 236 ASP LYS SEQRES 1 L 215 SER TYR GLU LEU THR GLN GLU THR GLY VAL SER VAL ALA SEQRES 2 L 215 LEU GLY ASP THR VAL THR ILE THR CYS GLU GLY ASP SER SEQRES 3 L 215 LEU GLU SER HIS TYR ALA SER TRP TYR GLN LYS LYS PRO SEQRES 4 L 215 GLY GLN ALA PRO ILE LEU LEU PHE TYR GLY ASP ASP ASN SEQRES 5 L 215 ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY ASP ALA SEQRES 6 L 215 ASP GLY ASN GLU ALA SER LEU THR ILE ASP GLY ALA GLN SEQRES 7 L 215 ALA GLU ASP ASP ALA GLU TYR TYR CYS SER SER ARG ASP SEQRES 8 L 215 LYS SER GLY SER ARG LEU SER VAL PHE GLY GLY GLY THR SEQRES 9 L 215 LYS LEU THR VAL LEU SER GLN PRO LYS ALA ALA PRO SER SEQRES 10 L 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA SEQRES 11 L 215 ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR SEQRES 12 L 215 PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER SEQRES 13 L 215 PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS SEQRES 14 L 215 GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER SEQRES 15 L 215 LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER SEQRES 16 L 215 CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR SEQRES 17 L 215 VAL ALA PRO THR GLU CYS SER SEQRES 1 O 163 ASN ALA MET GLN GLY ILE HIS PHE ARG ARG HIS TYR VAL SEQRES 2 O 163 ARG HIS LEU PRO LYS GLU VAL SER GLN ASN ASP ILE ILE SEQRES 3 O 163 LYS ALA LEU ALA SER PRO LEU ILE ASN ASP GLY MET VAL SEQRES 4 O 163 VAL SER ASP PHE ALA ASP HIS VAL ILE THR ARG GLU GLN SEQRES 5 O 163 ASN PHE PRO THR GLY LEU PRO VAL GLU PRO VAL GLY VAL SEQRES 6 O 163 ALA ILE PRO HIS THR ASP SER LYS TYR VAL ARG GLN ASN SEQRES 7 O 163 ALA ILE SER VAL GLY ILE LEU ALA GLU PRO VAL ASN PHE SEQRES 8 O 163 GLU ASP ALA GLY GLY GLU PRO ASP PRO VAL PRO VAL ARG SEQRES 9 O 163 VAL VAL PHE MET LEU ALA LEU GLY ASN TRP PHE ASP ILE SEQRES 10 O 163 THR ASN VAL LEU TRP TRP ILE LYS ALA VAL ILE GLN ASP SEQRES 11 O 163 GLU ASP PHE MET GLN GLN LEU LEU VAL MET ASN ASP ASP SEQRES 12 O 163 GLU ILE TYR GLN SER ILE TYR THR ARG ILE SER GLU LEU SEQRES 13 O 163 GLU HIS HIS HIS HIS HIS HIS HET PO4 L 301 5 HET PEG L 302 7 HETNAM PO4 PHOSPHATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 4 PO4 O4 P 3- FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *144(H2 O) HELIX 1 AA1 ASP H 28 ALA H 32 5 5 HELIX 2 AA2 GLY H 52A GLY H 54 5 5 HELIX 3 AA3 ASN H 73 ILE H 75 5 3 HELIX 4 AA4 ARG H 83 SER H 87 5 5 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 SER H 187 LEU H 189 5 3 HELIX 7 AA7 LYS H 201 ASN H 204 5 4 HELIX 8 AA8 ASP L 26 SER L 30 5 5 HELIX 9 AA9 GLN L 79 ASP L 83 5 5 HELIX 10 AB1 SER L 122 ALA L 128 1 7 HELIX 11 AB2 THR L 182 SER L 188 1 7 HELIX 12 AB3 ARG O 15 HIS O 17 5 3 HELIX 13 AB4 SER O 27 ASN O 41 1 15 HELIX 14 AB5 ASP O 48 PHE O 60 1 13 HELIX 15 AB6 ASP O 77 VAL O 81 5 5 HELIX 16 AB7 ASN O 119 GLN O 135 1 17 HELIX 17 AB8 ASP O 138 MET O 146 1 9 HELIX 18 AB9 ASN O 147 ARG O 158 1 12 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 PHE H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 LEU H 72 -1 N THR H 68 O GLU H 81 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 GLY H 88 TYR H 98 -1 N GLY H 88 O VAL H 109 SHEET 4 AA2 6 TRP H 33 GLN H 39 -1 N VAL H 37 O PHE H 91 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O GLY H 49 N TRP H 36 SHEET 6 AA2 6 VAL H 57 TYR H 59 -1 O ASP H 58 N ARG H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 GLY H 88 TYR H 98 -1 N GLY H 88 O VAL H 109 SHEET 4 AA3 4 GLU H 100I TRP H 103 -1 O TYR H 100K N GLY H 96 SHEET 1 AA4 4 SER H 120 SER H 127 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 SER H 127 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 5 GLY L 9 ALA L 14 0 SHEET 2 AA7 5 THR L 102 LEU L 107 1 O LYS L 103 N VAL L 11 SHEET 3 AA7 5 ALA L 84 ARG L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA7 5 SER L 34 LYS L 38 -1 N LYS L 38 O GLU L 85 SHEET 5 AA7 5 ILE L 45 PHE L 48 -1 O LEU L 47 N TRP L 35 SHEET 1 AA8 4 GLY L 9 ALA L 14 0 SHEET 2 AA8 4 THR L 102 LEU L 107 1 O LYS L 103 N VAL L 11 SHEET 3 AA8 4 ALA L 84 ARG L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 4 SER L 96 PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AA9 3 THR L 18 GLU L 24 0 SHEET 2 AA9 3 GLU L 70 ASP L 76 -1 O LEU L 73 N ILE L 21 SHEET 3 AA9 3 PHE L 62 ASP L 67 -1 N SER L 63 O THR L 74 SHEET 1 AB1 4 SER L 115 PHE L 119 0 SHEET 2 AB1 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AB1 4 TYR L 173 LEU L 181 -1 O LEU L 181 N ALA L 131 SHEET 4 AB1 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AB2 4 SER L 115 PHE L 119 0 SHEET 2 AB2 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AB2 4 TYR L 173 LEU L 181 -1 O LEU L 181 N ALA L 131 SHEET 4 AB2 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AB3 4 SER L 154 VAL L 156 0 SHEET 2 AB3 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 AB3 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 AB3 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SHEET 1 AB4 5 VAL O 19 LEU O 22 0 SHEET 2 AB4 5 ALA O 85 GLU O 98 1 O ALA O 92 N LEU O 22 SHEET 3 AB4 5 VAL O 107 ALA O 116 -1 O VAL O 107 N PHE O 97 SHEET 4 AB4 5 GLY O 70 ALA O 72 1 N ALA O 72 O PHE O 113 SHEET 5 AB4 5 GLY O 63 LEU O 64 -1 N LEU O 64 O VAL O 71 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 4 CYS L 135 CYS L 194 1555 1555 2.06 CISPEP 1 PRO H 100F PRO H 100G 0 3.03 CISPEP 2 PHE H 146 PRO H 147 0 -5.84 CISPEP 3 GLU H 148 PRO H 149 0 1.35 CISPEP 4 PRO H 213 LYS H 214 0 8.75 CISPEP 5 TYR L 141 PRO L 142 0 -0.21 CISPEP 6 GLU O 67 PRO O 68 0 2.68 SITE 1 AC1 5 SER H 100C LEU L 28 GLU L 29 SER L 30 SITE 2 AC1 5 TYR L 32 SITE 1 AC2 7 GLN L 37 GLY L 57 PRO L 59 PHE L 62 SITE 2 AC2 7 GLU L 81 ASP L 82 HOH L 424 CRYST1 110.879 66.972 84.259 90.00 101.46 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009019 0.000000 0.001829 0.00000 SCALE2 0.000000 0.014932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012110 0.00000