HEADER CELL CYCLE 24-AUG-16 5T2S TITLE STRUCTURE OF THE FHA1 DOMAIN OF RAD53 BOUND SIMULTANEOUSLY TO THE BRCT TITLE 2 DOMAIN OF DBF4 AND A PHOSPHOPEPTIDE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DDK KINASE REGULATORY SUBUNIT DBF4,SERINE/THREONINE-PROTEIN COMPND 3 KINASE RAD53; COMPND 4 CHAIN: A, C; COMPND 5 FRAGMENT: UNP P32325 RESIDUES 105-220 LINKED TO UNP P22216 RESIDUES COMPND 6 22-162 VIA LINKER RESIDUES VDGS; COMPND 7 SYNONYM: DUMBBELL FORMING PROTEIN 4,CHEK2 HOMOLOG,SERINE-PROTEIN COMPND 8 KINASE 1; COMPND 9 EC: 2.7.12.1; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: ASP-GLY-GLU-SER-TPO-ASP-GLU-ASP-ASP; COMPND 13 CHAIN: B, D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: DBF4, DNA52, YDR052C, D4205, YD9609.07C, RAD53, MEC2, SAD1, SOURCE 7 SPK1, YPL153C, P2588; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET15B; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 15 ORGANISM_TAXID: 4932; SOURCE 16 OTHER_DETAILS: SHORT PHOSPHORYLATED PEPTIDE DERIVED FROM CDC7 KEYWDS FHA; BRCT; PHOSPHOPEPTIDE; PROTEIN CHIMERA, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR A.GUARNE,A.ALMAWI,L.MATTHEWS REVDAT 5 13-NOV-24 5T2S 1 REMARK REVDAT 4 04-OCT-23 5T2S 1 REMARK REVDAT 3 08-JAN-20 5T2S 1 REMARK REVDAT 2 19-OCT-16 5T2S 1 COMPND REVDAT 1 12-OCT-16 5T2S 0 JRNL AUTH A.W.ALMAWI,L.A.MATTHEWS,P.MYROX,S.BOULTON,C.LAI,T.MORAES, JRNL AUTH 2 G.MELACINI,R.GHIRLANDO,B.P.DUNCKER,A.GUARNE JRNL TITL 'AND' LOGIC GATES AT WORK: CRYSTAL STRUCTURE OF RAD53 BOUND JRNL TITL 2 TO DBF4 AND CDC7. JRNL REF SCI REP V. 6 34237 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27681475 JRNL DOI 10.1038/SREP34237 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 28179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.440 REMARK 3 FREE R VALUE TEST SET COUNT : 1534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6790 - 5.3337 0.95 2406 146 0.1876 0.1954 REMARK 3 2 5.3337 - 4.2351 0.97 2437 127 0.1579 0.1821 REMARK 3 3 4.2351 - 3.7002 0.98 2405 131 0.1789 0.2001 REMARK 3 4 3.7002 - 3.3620 0.97 2407 148 0.2030 0.2054 REMARK 3 5 3.3620 - 3.1212 0.98 2424 128 0.2169 0.2504 REMARK 3 6 3.1212 - 2.9372 0.99 2424 153 0.2250 0.2693 REMARK 3 7 2.9372 - 2.7902 0.99 2433 130 0.2458 0.2667 REMARK 3 8 2.7902 - 2.6687 0.99 2438 140 0.2603 0.2612 REMARK 3 9 2.6687 - 2.5660 0.99 2426 140 0.2670 0.3147 REMARK 3 10 2.5660 - 2.4775 0.99 2404 144 0.2841 0.2934 REMARK 3 11 2.4775 - 2.4000 0.99 2441 147 0.2925 0.3347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4237 REMARK 3 ANGLE : 0.733 5701 REMARK 3 CHIRALITY : 0.030 652 REMARK 3 PLANARITY : 0.002 716 REMARK 3 DIHEDRAL : 15.043 1568 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36580 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 39.674 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1G6G; 3QBZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 8.5 12.5 % PEG 3350 REMARK 280 (V/V), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.63000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 102 REMARK 465 LEU A 218 REMARK 465 ASP A 219 REMARK 465 HIS A 220 REMARK 465 VAL A 221 REMARK 465 ASP A 222 REMARK 465 GLY A 223 REMARK 465 SER A 224 REMARK 465 LYS A 225 REMARK 465 PHE A 226 REMARK 465 SER A 227 REMARK 465 GLN A 228 REMARK 465 GLU A 229 REMARK 465 GLN A 230 REMARK 465 VAL A 363 REMARK 465 ASP A 364 REMARK 465 ARG A 365 REMARK 465 VAL B 10 REMARK 465 VAL B 11 REMARK 465 SER B 12 REMARK 465 SER C 102 REMARK 465 VAL C 221 REMARK 465 ASP C 222 REMARK 465 GLY C 223 REMARK 465 SER C 224 REMARK 465 LYS C 225 REMARK 465 PHE C 226 REMARK 465 SER C 227 REMARK 465 GLN C 228 REMARK 465 GLU C 229 REMARK 465 GLN C 230 REMARK 465 ILE C 231 REMARK 465 ASN C 361 REMARK 465 LYS C 362 REMARK 465 VAL C 363 REMARK 465 ASP C 364 REMARK 465 ARG C 365 REMARK 465 VAL D 10 REMARK 465 VAL D 11 REMARK 465 SER D 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 VAL A 134 CB CG1 CG2 REMARK 470 MET A 136 CB CG SD CE REMARK 470 ASN A 137 CB CG OD1 ND2 REMARK 470 THR A 138 CB OG1 CG2 REMARK 470 TYR A 139 CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 142 OG REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 SER A 256 OG REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 SER A 285 OG REMARK 470 GLU A 359 CG CD OE1 OE2 REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 ASP B 1 CB CG OD1 OD2 REMARK 470 SER B 4 OG REMARK 470 ASP B 6 CG OD1 OD2 REMARK 470 ASP B 9 CG OD1 OD2 REMARK 470 HIS C 103 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 141 CG CD CE NZ REMARK 470 ARG C 153 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 164 CG CD OE1 NE2 REMARK 470 PHE C 165 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 218 CG CD1 CD2 REMARK 470 ASP C 219 OD1 OD2 REMARK 470 LYS C 260 CG CD CE NZ REMARK 470 LYS C 262 CG CD CE NZ REMARK 470 ASP C 299 CG OD1 OD2 REMARK 470 LYS C 353 CG CD CE NZ REMARK 470 GLN C 356 CG CD OE1 NE2 REMARK 470 LEU C 358 CD1 CD2 REMARK 470 GLU C 359 CB CG CD OE1 OE2 REMARK 470 GLN C 360 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 528 O HOH A 562 1.93 REMARK 500 O HOH C 587 O HOH C 590 2.08 REMARK 500 O HOH C 595 O HOH C 596 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 167 -174.99 -175.11 REMARK 500 ASN C 283 59.46 -99.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T2F RELATED DB: PDB REMARK 900 TWO STRUCTURES WERE SOLVED ON THIS WORK. THE BINARY COMPLEX IS REMARK 900 ENTRY 5T2F AND THE TERNARY COMPLEX (WITH A PHOSPHOPEPTIDE) IS THIS REMARK 900 ENTRY. DBREF 5T2S A 105 220 UNP P32325 DBF4_YEAST 105 220 DBREF 5T2S A 225 365 UNP P22216 RAD53_YEAST 22 162 DBREF 5T2S B 1 12 PDB 5T2S 5T2S 1 12 DBREF 5T2S C 105 220 UNP P32325 DBF4_YEAST 105 220 DBREF 5T2S C 225 365 UNP P22216 RAD53_YEAST 22 162 DBREF 5T2S D 1 12 PDB 5T2S 5T2S 1 12 SEQADV 5T2S SER A 102 UNP P32325 EXPRESSION TAG SEQADV 5T2S HIS A 103 UNP P32325 EXPRESSION TAG SEQADV 5T2S MET A 104 UNP P32325 EXPRESSION TAG SEQADV 5T2S VAL A 221 UNP P32325 LINKER SEQADV 5T2S ASP A 222 UNP P32325 LINKER SEQADV 5T2S GLY A 223 UNP P32325 LINKER SEQADV 5T2S SER A 224 UNP P32325 LINKER SEQADV 5T2S SER C 102 UNP P32325 EXPRESSION TAG SEQADV 5T2S HIS C 103 UNP P32325 EXPRESSION TAG SEQADV 5T2S MET C 104 UNP P32325 EXPRESSION TAG SEQADV 5T2S VAL C 221 UNP P32325 LINKER SEQADV 5T2S ASP C 222 UNP P32325 LINKER SEQADV 5T2S GLY C 223 UNP P32325 LINKER SEQADV 5T2S SER C 224 UNP P32325 LINKER SEQRES 1 A 264 SER HIS MET THR PRO LYS GLU LEU LEU GLU TRP GLN THR SEQRES 2 A 264 ASN TRP LYS LYS ILE MET LYS ARG ASP SER ARG ILE TYR SEQRES 3 A 264 PHE ASP ILE THR ASP ASP VAL GLU MET ASN THR TYR ASN SEQRES 4 A 264 LYS SER LYS MET ASP LYS ARG ARG ASP LEU LEU LYS ARG SEQRES 5 A 264 GLY PHE LEU THR LEU GLY ALA GLN ILE THR GLN PHE PHE SEQRES 6 A 264 ASP THR THR VAL THR ILE VAL ILE THR ARG ARG SER VAL SEQRES 7 A 264 GLU ASN ILE TYR LEU LEU LYS ASP THR ASP ILE LEU SER SEQRES 8 A 264 ARG ALA LYS LYS ASN TYR MET LYS VAL TRP SER TYR GLU SEQRES 9 A 264 LYS ALA ALA ARG PHE LEU LYS ASN LEU ASP VAL ASP LEU SEQRES 10 A 264 ASP HIS VAL ASP GLY SER LYS PHE SER GLN GLU GLN ILE SEQRES 11 A 264 GLY GLU ASN ILE VAL CYS ARG VAL ILE CYS THR THR GLY SEQRES 12 A 264 GLN ILE PRO ILE ARG ASP LEU SER ALA ASP ILE SER GLN SEQRES 13 A 264 VAL LEU LYS GLU LYS ARG SER ILE LYS LYS VAL TRP THR SEQRES 14 A 264 PHE GLY ARG ASN PRO ALA CYS ASP TYR HIS LEU GLY ASN SEQRES 15 A 264 ILE SER ARG LEU SER ASN LYS HIS PHE GLN ILE LEU LEU SEQRES 16 A 264 GLY GLU ASP GLY ASN LEU LEU LEU ASN ASP ILE SER THR SEQRES 17 A 264 ASN GLY THR TRP LEU ASN GLY GLN LYS VAL GLU LYS ASN SEQRES 18 A 264 SER ASN GLN LEU LEU SER GLN GLY ASP GLU ILE THR VAL SEQRES 19 A 264 GLY VAL GLY VAL GLU SER ASP ILE LEU SER LEU VAL ILE SEQRES 20 A 264 PHE ILE ASN ASP LYS PHE LYS GLN CYS LEU GLU GLN ASN SEQRES 21 A 264 LYS VAL ASP ARG SEQRES 1 B 12 ASP GLY GLU SER TPO ASP GLU ASP ASP VAL VAL SER SEQRES 1 C 264 SER HIS MET THR PRO LYS GLU LEU LEU GLU TRP GLN THR SEQRES 2 C 264 ASN TRP LYS LYS ILE MET LYS ARG ASP SER ARG ILE TYR SEQRES 3 C 264 PHE ASP ILE THR ASP ASP VAL GLU MET ASN THR TYR ASN SEQRES 4 C 264 LYS SER LYS MET ASP LYS ARG ARG ASP LEU LEU LYS ARG SEQRES 5 C 264 GLY PHE LEU THR LEU GLY ALA GLN ILE THR GLN PHE PHE SEQRES 6 C 264 ASP THR THR VAL THR ILE VAL ILE THR ARG ARG SER VAL SEQRES 7 C 264 GLU ASN ILE TYR LEU LEU LYS ASP THR ASP ILE LEU SER SEQRES 8 C 264 ARG ALA LYS LYS ASN TYR MET LYS VAL TRP SER TYR GLU SEQRES 9 C 264 LYS ALA ALA ARG PHE LEU LYS ASN LEU ASP VAL ASP LEU SEQRES 10 C 264 ASP HIS VAL ASP GLY SER LYS PHE SER GLN GLU GLN ILE SEQRES 11 C 264 GLY GLU ASN ILE VAL CYS ARG VAL ILE CYS THR THR GLY SEQRES 12 C 264 GLN ILE PRO ILE ARG ASP LEU SER ALA ASP ILE SER GLN SEQRES 13 C 264 VAL LEU LYS GLU LYS ARG SER ILE LYS LYS VAL TRP THR SEQRES 14 C 264 PHE GLY ARG ASN PRO ALA CYS ASP TYR HIS LEU GLY ASN SEQRES 15 C 264 ILE SER ARG LEU SER ASN LYS HIS PHE GLN ILE LEU LEU SEQRES 16 C 264 GLY GLU ASP GLY ASN LEU LEU LEU ASN ASP ILE SER THR SEQRES 17 C 264 ASN GLY THR TRP LEU ASN GLY GLN LYS VAL GLU LYS ASN SEQRES 18 C 264 SER ASN GLN LEU LEU SER GLN GLY ASP GLU ILE THR VAL SEQRES 19 C 264 GLY VAL GLY VAL GLU SER ASP ILE LEU SER LEU VAL ILE SEQRES 20 C 264 PHE ILE ASN ASP LYS PHE LYS GLN CYS LEU GLU GLN ASN SEQRES 21 C 264 LYS VAL ASP ARG SEQRES 1 D 12 ASP GLY GLU SER TPO ASP GLU ASP ASP VAL VAL SER HET TPO B 5 11 HET TPO D 5 11 HET GOL A 401 6 HET GOL A 402 6 HET GOL C 401 6 HET GOL C 402 6 HET GOL C 403 6 HET GOL C 404 6 HET GOL C 405 6 HET GOL C 406 6 HET GOL C 407 6 HET GOL C 408 6 HET GOL D 101 6 HETNAM TPO PHOSPHOTHREONINE HETNAM GOL GLYCEROL HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 TPO 2(C4 H10 N O6 P) FORMUL 5 GOL 11(C3 H8 O3) FORMUL 16 HOH *177(H2 O) HELIX 1 AA1 THR A 105 ASP A 123 1 19 HELIX 2 AA2 ASN A 137 LEU A 158 1 22 HELIX 3 AA3 ASN A 181 LEU A 185 5 5 HELIX 4 AA4 ASP A 189 ASN A 197 1 9 HELIX 5 AA5 SER A 203 LEU A 214 1 12 HELIX 6 AA6 ASP A 254 GLU A 261 1 8 HELIX 7 AA7 ASN A 351 ASN A 361 1 11 HELIX 8 AA8 THR C 105 ASP C 123 1 19 HELIX 9 AA9 ASN C 137 LEU C 158 1 22 HELIX 10 AB1 ASN C 181 LEU C 185 5 5 HELIX 11 AB2 ASP C 189 ASN C 197 1 9 HELIX 12 AB3 TYR C 204 LEU C 214 1 11 HELIX 13 AB4 ASP C 254 GLU C 261 1 8 HELIX 14 AB5 ASN C 351 LEU C 358 1 8 SHEET 1 AA1 4 GLN A 161 ILE A 162 0 SHEET 2 AA1 4 ARG A 125 PHE A 128 1 N ILE A 126 O GLN A 161 SHEET 3 AA1 4 ILE A 172 ILE A 174 1 O ILE A 172 N TYR A 127 SHEET 4 AA1 4 LYS A 200 TRP A 202 1 O LYS A 200 N VAL A 173 SHEET 1 AA2 6 ARG A 249 ALA A 253 0 SHEET 2 AA2 6 ASN A 234 CYS A 241 -1 N VAL A 236 O LEU A 251 SHEET 3 AA2 6 LEU A 344 ILE A 350 -1 O VAL A 347 N ILE A 240 SHEET 4 AA2 6 ASP A 331 VAL A 335 -1 N ILE A 333 O LEU A 346 SHEET 5 AA2 6 TRP A 313 LEU A 314 -1 N TRP A 313 O THR A 334 SHEET 6 AA2 6 GLN A 317 LYS A 318 -1 O GLN A 317 N LEU A 314 SHEET 1 AA3 5 TYR A 279 HIS A 280 0 SHEET 2 AA3 5 LYS A 267 GLY A 272 1 N GLY A 272 O TYR A 279 SHEET 3 AA3 5 PHE A 292 LEU A 296 -1 O PHE A 292 N PHE A 271 SHEET 4 AA3 5 LEU A 302 ASP A 306 -1 O ASN A 305 N GLN A 293 SHEET 5 AA3 5 GLN A 325 LEU A 326 -1 O GLN A 325 N LEU A 304 SHEET 1 AA4 4 GLN C 161 THR C 163 0 SHEET 2 AA4 4 ARG C 125 PHE C 128 1 N ILE C 126 O GLN C 161 SHEET 3 AA4 4 ILE C 172 THR C 175 1 O ILE C 172 N TYR C 127 SHEET 4 AA4 4 LYS C 200 SER C 203 1 O TRP C 202 N VAL C 173 SHEET 1 AA5 6 ARG C 249 ALA C 253 0 SHEET 2 AA5 6 ASN C 234 CYS C 241 -1 N VAL C 239 O ARG C 249 SHEET 3 AA5 6 LEU C 344 ILE C 350 -1 O PHE C 349 N ARG C 238 SHEET 4 AA5 6 ILE C 333 VAL C 335 -1 N ILE C 333 O LEU C 346 SHEET 5 AA5 6 THR C 312 LEU C 314 -1 N TRP C 313 O THR C 334 SHEET 6 AA5 6 GLN C 317 LYS C 318 -1 O GLN C 317 N LEU C 314 SHEET 1 AA6 5 TYR C 279 HIS C 280 0 SHEET 2 AA6 5 ILE C 265 GLY C 272 1 N GLY C 272 O TYR C 279 SHEET 3 AA6 5 PHE C 292 GLY C 297 -1 O PHE C 292 N PHE C 271 SHEET 4 AA6 5 LEU C 302 ASP C 306 -1 O LEU C 303 N LEU C 295 SHEET 5 AA6 5 GLN C 325 LEU C 326 -1 O GLN C 325 N LEU C 304 LINK C SER B 4 N TPO B 5 1555 1555 1.33 LINK C TPO B 5 N ASP B 6 1555 1555 1.33 LINK C SER D 4 N TPO D 5 1555 1555 1.33 LINK C TPO D 5 N ASP D 6 1555 1555 1.33 SITE 1 AC1 3 LEU A 109 HOH A 519 THR C 242 SITE 1 AC2 1 ARG A 238 SITE 1 AC3 5 TRP A 202 LYS A 206 ASN C 315 GLU C 332 SITE 2 AC3 5 HOH C 535 SITE 1 AC4 5 ASN A 315 GLU A 332 LYS C 200 TRP C 202 SITE 2 AC4 5 LYS C 206 SITE 1 AC5 3 TRP C 112 HOH C 502 HOH C 546 SITE 1 AC6 4 GLN C 245 ARG C 249 HIS C 280 GLY C 282 SITE 1 AC7 5 ARG C 238 PHE C 349 ILE C 350 ASN C 351 SITE 2 AC7 5 HOH C 563 SITE 1 AC8 3 ASN C 289 LYS C 290 GOL D 101 SITE 1 AC9 2 VAL C 337 GLY C 338 SITE 1 AD1 2 ILE C 248 ARG C 249 SITE 1 AD2 2 GOL C 406 HOH D 205 CRYST1 64.520 87.260 66.150 90.00 94.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015499 0.000000 0.001087 0.00000 SCALE2 0.000000 0.011460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015154 0.00000