HEADER TRANSFERASE 25-AUG-16 5T38 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF EVDMO1 WITH SAH BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: EVDMO1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: METHYLTRANSFERASE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROMONOSPORA CARBONACEA; SOURCE 3 ORGANISM_TAXID: 47853; SOURCE 4 GENE: EVDMO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS METHYLTRANSFERASE, ROSSMANN-LIKE FOLD, SAM-DEPENDENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.MCCULLOCH,S.BERNDT,I.YAMAKAWA,Q.CHEN,L.V.LOUKACHEVITCH, AUTHOR 2 C.STARBIRD,N.A.PERRY,T.M.IVERSON REVDAT 4 04-OCT-23 5T38 1 REMARK REVDAT 3 04-DEC-19 5T38 1 REMARK REVDAT 2 20-MAR-19 5T38 1 JRNL REVDAT 1 06-SEP-17 5T38 0 JRNL AUTH C.A.STARBIRD,N.A.PERRY,Q.CHEN,S.BERNDT,I.YAMAKAWA, JRNL AUTH 2 L.V.LOUKACHEVITCH,E.M.LIMBRICK,B.O.BACHMANN,T.M.IVERSON, JRNL AUTH 3 K.M.MCCULLOCH JRNL TITL THE STRUCTURE OF THE BIFUNCTIONAL EVERNINOMICIN BIOSYNTHETIC JRNL TITL 2 ENZYME EVDMO1 SUGGESTS INDEPENDENT ACTIVITY OF THE FUSED JRNL TITL 3 METHYLTRANSFERASE-OXIDASE DOMAINS. JRNL REF BIOCHEMISTRY V. 57 6827 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 30525509 JRNL DOI 10.1021/ACS.BIOCHEM.8B00836 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 79826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0140 - 3.4912 0.94 2744 156 0.1481 0.1670 REMARK 3 2 3.4912 - 2.7716 1.00 2862 149 0.1510 0.1774 REMARK 3 3 2.7716 - 2.4213 1.00 2854 134 0.1464 0.1794 REMARK 3 4 2.4213 - 2.2000 1.00 2818 160 0.1355 0.1414 REMARK 3 5 2.2000 - 2.0424 1.00 2838 156 0.1354 0.1370 REMARK 3 6 2.0424 - 1.9220 1.00 2833 139 0.1413 0.1511 REMARK 3 7 1.9220 - 1.8257 1.00 2810 154 0.1412 0.1498 REMARK 3 8 1.8257 - 1.7463 0.99 2833 124 0.1450 0.1669 REMARK 3 9 1.7463 - 1.6790 1.00 2805 141 0.1462 0.1525 REMARK 3 10 1.6790 - 1.6211 1.00 2796 136 0.1372 0.1637 REMARK 3 11 1.6211 - 1.5704 0.99 2804 139 0.1398 0.1491 REMARK 3 12 1.5704 - 1.5255 0.99 2777 150 0.1415 0.1518 REMARK 3 13 1.5255 - 1.4854 0.99 2790 146 0.1530 0.1598 REMARK 3 14 1.4854 - 1.4491 0.99 2786 132 0.1562 0.1776 REMARK 3 15 1.4491 - 1.4162 0.99 2799 136 0.1609 0.1811 REMARK 3 16 1.4162 - 1.3860 0.99 2786 139 0.1616 0.1806 REMARK 3 17 1.3860 - 1.3583 0.98 2772 132 0.1670 0.1871 REMARK 3 18 1.3583 - 1.3327 0.98 2715 146 0.1746 0.1884 REMARK 3 19 1.3327 - 1.3089 0.98 2787 144 0.1710 0.1636 REMARK 3 20 1.3089 - 1.2867 0.98 2727 130 0.1781 0.1707 REMARK 3 21 1.2867 - 1.2659 0.97 2728 149 0.1884 0.1964 REMARK 3 22 1.2659 - 1.2465 0.97 2713 144 0.1907 0.2229 REMARK 3 23 1.2465 - 1.2281 0.96 2697 137 0.2080 0.2406 REMARK 3 24 1.2281 - 1.2108 0.95 2689 144 0.2154 0.2382 REMARK 3 25 1.2108 - 1.1945 0.94 2640 121 0.2071 0.2278 REMARK 3 26 1.1945 - 1.1789 0.89 2465 121 0.2252 0.2415 REMARK 3 27 1.1789 - 1.1642 0.78 2218 127 0.2262 0.2360 REMARK 3 28 1.1642 - 1.1502 0.66 1844 110 0.2251 0.2090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2002 REMARK 3 ANGLE : 0.984 2728 REMARK 3 CHIRALITY : 0.072 295 REMARK 3 PLANARITY : 0.006 363 REMARK 3 DIHEDRAL : 21.399 757 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.2169 9.9948 60.7066 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.1297 REMARK 3 T33: 0.0897 T12: 0.0116 REMARK 3 T13: 0.0019 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.8815 L22: 6.0127 REMARK 3 L33: 1.0117 L12: 3.0519 REMARK 3 L13: -0.8105 L23: -0.9650 REMARK 3 S TENSOR REMARK 3 S11: 0.0423 S12: -0.0588 S13: -0.0289 REMARK 3 S21: 0.2430 S22: -0.0607 S23: -0.1856 REMARK 3 S31: -0.0012 S32: 0.1442 S33: 0.0095 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.0415 3.9521 55.8335 REMARK 3 T TENSOR REMARK 3 T11: 0.1612 T22: 0.1773 REMARK 3 T33: 0.1745 T12: 0.0158 REMARK 3 T13: 0.0381 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.3317 L22: 0.2913 REMARK 3 L33: 0.4054 L12: -0.3581 REMARK 3 L13: 0.4467 L23: 0.0968 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: 0.1885 S13: -0.1933 REMARK 3 S21: 0.0996 S22: 0.0476 S23: 0.0887 REMARK 3 S31: -0.0467 S32: -0.2076 S33: 0.0216 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.1570 15.5866 68.7056 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.0694 REMARK 3 T33: 0.0842 T12: -0.0028 REMARK 3 T13: 0.0094 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.7011 L22: 2.5862 REMARK 3 L33: 1.4560 L12: -1.3187 REMARK 3 L13: -0.7078 L23: 0.5883 REMARK 3 S TENSOR REMARK 3 S11: 0.0974 S12: 0.0962 S13: 0.1524 REMARK 3 S21: -0.1899 S22: -0.0659 S23: -0.1833 REMARK 3 S31: -0.1072 S32: 0.0370 S33: -0.0168 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.8687 9.9464 72.0532 REMARK 3 T TENSOR REMARK 3 T11: 0.0496 T22: 0.1056 REMARK 3 T33: 0.0946 T12: 0.0096 REMARK 3 T13: -0.0120 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.4878 L22: 2.3525 REMARK 3 L33: 2.9203 L12: 1.0954 REMARK 3 L13: -1.5563 L23: 0.9367 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: -0.1133 S13: 0.0622 REMARK 3 S21: -0.0278 S22: -0.0058 S23: -0.0887 REMARK 3 S31: -0.0307 S32: 0.1381 S33: -0.0019 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2308 4.0310 76.5395 REMARK 3 T TENSOR REMARK 3 T11: 0.0604 T22: 0.0835 REMARK 3 T33: 0.0605 T12: 0.0025 REMARK 3 T13: -0.0014 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.6800 L22: 1.9213 REMARK 3 L33: 0.9279 L12: 0.2154 REMARK 3 L13: -0.0778 L23: 0.2677 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.0556 S13: -0.0019 REMARK 3 S21: 0.0175 S22: 0.0018 S23: -0.0269 REMARK 3 S31: 0.0794 S32: -0.0018 S33: 0.0106 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5270 -1.2075 69.5303 REMARK 3 T TENSOR REMARK 3 T11: 0.1180 T22: 0.1030 REMARK 3 T33: 0.0687 T12: -0.0115 REMARK 3 T13: -0.0190 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.7691 L22: 1.2773 REMARK 3 L33: 0.3385 L12: 0.3315 REMARK 3 L13: -0.1824 L23: -0.1823 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: 0.0360 S13: -0.0703 REMARK 3 S21: -0.1860 S22: 0.0440 S23: 0.0897 REMARK 3 S31: 0.0555 S32: -0.0797 S33: 0.0179 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000222301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79855 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% TACSIMATE, PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.63600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 470 PRO A 76 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 26 O HOH A 402 1.23 REMARK 500 HD22 ASN A 18 O HOH A 403 1.32 REMARK 500 HH21 ARG A 233 O HOH A 404 1.57 REMARK 500 OE2 GLU A 166 O HOH A 401 1.85 REMARK 500 O HOH A 631 O HOH A 711 1.88 REMARK 500 O HOH A 444 O HOH A 649 1.88 REMARK 500 O HOH A 671 O HOH A 698 1.99 REMARK 500 NH1 ARG A 26 O HOH A 402 2.06 REMARK 500 O HOH A 589 O HOH A 708 2.06 REMARK 500 O HOH A 405 O HOH A 555 2.08 REMARK 500 O HOH A 406 O HOH A 529 2.12 REMARK 500 ND2 ASN A 18 O HOH A 403 2.13 REMARK 500 O HOH A 402 O HOH A 561 2.14 REMARK 500 NH2 ARG A 233 O HOH A 404 2.15 REMARK 500 O HOH A 689 O HOH A 720 2.17 REMARK 500 O HOH A 406 O HOH A 621 2.18 REMARK 500 O LEU A 115 O HOH A 405 2.18 REMARK 500 O GLU A 14 O HOH A 406 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 471 O HOH A 554 1655 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 64 -114.47 55.78 REMARK 500 GLU A 222 -95.77 -114.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T39 RELATED DB: PDB DBREF 5T38 A -20 233 PDB 5T38 5T38 -20 233 SEQRES 1 A 254 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 254 LEU VAL PRO ARG GLY SER HIS MET MET ASP ARG ARG GLU SEQRES 3 A 254 ILE GLN ARG ARG ALA LYS GLU LEU GLU PRO TRP VAL ASN SEQRES 4 A 254 GLY PHE GLU PHE GLU GLY ILE ARG TYR ALA GLU GLY SER SEQRES 5 A 254 ASP HIS GLY TYR LEU LEU SER GLN ASP PRO ALA ASP ARG SEQRES 6 A 254 ALA ARG ALA PHE TYR GLU ALA PHE PRO GLY ALA THR ARG SEQRES 7 A 254 ILE LEU GLU LEU GLY ALA LEU GLU GLY ALA ASP THR LEU SEQRES 8 A 254 ALA LEU ALA ARG GLN PRO GLY THR SER ILE LEU GLY LEU SEQRES 9 A 254 GLU GLY ARG GLU GLU ASN LEU ARG ARG ALA GLU PHE VAL SEQRES 10 A 254 MET GLU VAL HIS GLY ALA THR ASN VAL GLU LEU ARG ILE SEQRES 11 A 254 ALA ASP VAL GLU THR LEU ASP PHE ALA THR LEU GLY ARG SEQRES 12 A 254 PHE ASP ALA VAL LEU CYS ALA GLY LEU LEU TYR HIS VAL SEQRES 13 A 254 ARG GLU PRO TRP ALA LEU LEU LYS ASP ALA ALA ARG VAL SEQRES 14 A 254 SER ALA GLY ILE TYR LEU SER THR HIS TYR TRP GLY SER SEQRES 15 A 254 SER ASP GLY LEU GLU THR LEU ASP GLY TYR SER VAL LYS SEQRES 16 A 254 HIS VAL ARG GLU GLU HIS PRO GLU PRO GLN ALA ARG GLY SEQRES 17 A 254 LEU SER VAL ASP VAL ARG TRP LEU ASP ARG ALA SER LEU SEQRES 18 A 254 PHE ALA ALA LEU GLU ASN ALA GLY PHE VAL GLU ILE GLU SEQRES 19 A 254 VAL LEU HIS GLU ARG THR SER ALA GLU VAL CYS ASP ILE SEQRES 20 A 254 VAL VAL VAL GLY ARG ALA ARG HET SAH A 301 45 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 HOH *322(H2 O) HELIX 1 AA1 ASP A 2 LEU A 13 1 12 HELIX 2 AA2 HIS A 33 LEU A 37 5 5 HELIX 3 AA3 ASP A 40 PHE A 52 1 13 HELIX 4 AA4 GLY A 66 ARG A 74 1 9 HELIX 5 AA5 ARG A 86 GLY A 101 1 16 HELIX 6 AA6 ASP A 116 LEU A 120 5 5 HELIX 7 AA7 LEU A 131 VAL A 135 5 5 HELIX 8 AA8 GLU A 137 SER A 149 1 13 HELIX 9 AA9 GLU A 182 ARG A 186 5 5 HELIX 10 AB1 ASP A 196 GLY A 208 1 13 SHEET 1 AA1 2 PHE A 20 PHE A 22 0 SHEET 2 AA1 2 ILE A 25 ALA A 28 -1 O ALA A 28 N PHE A 20 SHEET 1 AA2 7 VAL A 105 ILE A 109 0 SHEET 2 AA2 7 SER A 79 GLU A 84 1 N GLY A 82 O GLU A 106 SHEET 3 AA2 7 ARG A 57 LEU A 61 1 N GLU A 60 O LEU A 81 SHEET 4 AA2 7 ALA A 125 ALA A 129 1 O LEU A 127 N LEU A 59 SHEET 5 AA2 7 GLY A 151 TRP A 159 1 O TYR A 153 N CYS A 128 SHEET 6 AA2 7 VAL A 223 ARG A 231 -1 O VAL A 228 N LEU A 154 SHEET 7 AA2 7 GLU A 211 ARG A 218 -1 N GLU A 213 O VAL A 229 SHEET 1 AA3 3 GLU A 166 LEU A 168 0 SHEET 2 AA3 3 TYR A 171 ARG A 177 -1 O TYR A 171 N LEU A 168 SHEET 3 AA3 3 ASP A 191 LEU A 195 -1 O TRP A 194 N LYS A 174 CISPEP 1 GLU A 14 PRO A 15 0 5.33 SITE 1 AC1 23 LEU A 37 SER A 38 ARG A 44 GLY A 62 SITE 2 AC1 23 LEU A 64 GLU A 84 GLY A 85 ARG A 86 SITE 3 AC1 23 ASN A 89 ALA A 110 ASP A 111 VAL A 112 SITE 4 AC1 23 ALA A 129 GLY A 130 LEU A 131 GLN A 184 SITE 5 AC1 23 ALA A 185 ARG A 186 GLY A 187 HOH A 445 SITE 6 AC1 23 HOH A 456 HOH A 474 HOH A 504 CRYST1 51.427 41.272 56.465 90.00 99.80 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019445 0.000000 0.003359 0.00000 SCALE2 0.000000 0.024230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017972 0.00000