HEADER LIGASE 25-AUG-16 5T3E TITLE CRYSTAL STRUCTURE OF A NONRIBOSOMAL PEPTIDE SYNTHETASE TITLE 2 HETEROCYCLIZATION DOMAIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACILLAMIDE SYNTHETASE HETEROCYCLIZATION DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 844-1287; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOACTINOMYCES VULGARIS; SOURCE 3 ORGANISM_TAXID: 2026; SOURCE 4 GENE: ADL26_17380; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NONRIBOSOMAL PEPTIDE SYNTHETASE, HETEROCYCLIZATION DOMAIN, NATURAL KEYWDS 2 PRODUCTS, THIAZOLINE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.BLOUDOFF,T.M.SCHMEING REVDAT 4 04-OCT-23 5T3E 1 REMARK REVDAT 3 11-JAN-17 5T3E 1 JRNL REVDAT 2 04-JAN-17 5T3E 1 JRNL REVDAT 1 02-NOV-16 5T3E 0 JRNL AUTH K.BLOUDOFF,C.D.FAGE,M.A.MARAHIEL,T.M.SCHMEING JRNL TITL STRUCTURAL AND MUTATIONAL ANALYSIS OF THE NONRIBOSOMAL JRNL TITL 2 PEPTIDE SYNTHETASE HETEROCYCLIZATION DOMAIN PROVIDES INSIGHT JRNL TITL 3 INTO CATALYSIS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 95 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 27994138 JRNL DOI 10.1073/PNAS.1614191114 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 52042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8999 - 6.1214 0.98 2669 127 0.1714 0.1846 REMARK 3 2 6.1214 - 4.8615 0.99 2608 139 0.1792 0.2135 REMARK 3 3 4.8615 - 4.2478 0.99 2624 147 0.1605 0.1941 REMARK 3 4 4.2478 - 3.8597 1.00 2615 136 0.1799 0.2144 REMARK 3 5 3.8597 - 3.5833 1.00 2611 141 0.1868 0.2153 REMARK 3 6 3.5833 - 3.3721 1.00 2633 127 0.2045 0.2246 REMARK 3 7 3.3721 - 3.2033 1.00 2629 142 0.2216 0.2728 REMARK 3 8 3.2033 - 3.0639 1.00 2649 126 0.2298 0.2968 REMARK 3 9 3.0639 - 2.9460 1.00 2594 131 0.2326 0.2611 REMARK 3 10 2.9460 - 2.8444 1.00 2633 132 0.2267 0.2727 REMARK 3 11 2.8444 - 2.7555 1.00 2582 147 0.2424 0.3093 REMARK 3 12 2.7555 - 2.6767 1.00 2587 147 0.2463 0.3113 REMARK 3 13 2.6767 - 2.6063 1.00 2608 162 0.2468 0.2883 REMARK 3 14 2.6063 - 2.5427 1.00 2578 156 0.2580 0.3456 REMARK 3 15 2.5427 - 2.4849 1.00 2637 162 0.2609 0.3101 REMARK 3 16 2.4849 - 2.4320 1.00 2622 122 0.2658 0.3311 REMARK 3 17 2.4320 - 2.3834 1.00 2586 144 0.2755 0.2928 REMARK 3 18 2.3834 - 2.3384 1.00 2616 116 0.2840 0.3746 REMARK 3 19 2.3384 - 2.2967 0.91 2338 119 0.2912 0.3221 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7193 REMARK 3 ANGLE : 0.773 9786 REMARK 3 CHIRALITY : 0.050 1073 REMARK 3 PLANARITY : 0.005 1272 REMARK 3 DIHEDRAL : 17.943 4318 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52064 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 39.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4JN3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BMDB-CY2 WAS CRYSTALLIZED BY MIXING REMARK 280 WITH 0.88% TWEEN 20, 1.62 M AMMONIUM SULFATE, 0.1 M HEPES PH 7.5, REMARK 280 2.67% PEG 400, AND 3% 6-AMINOHEXANOIC ACID, AND EQUILIBRATED REMARK 280 0.88% TWEEN 20, 1.62 M AMMONIUM SULFATE, 0.1 M HEPES PH 7.5, REMARK 280 2.67% PEG 400, AND 3% 6-AMINOHEXANOIC ACID. CRYSTALS WERE REMARK 280 TRANSFERRED INTO A SOLUTION OF MOTHER LIQUOR PLUS 20% (V/V) REMARK 280 ETHYLENE GLYCOL, AND FLASH-COOLED IN LIQUID NITROGEN., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.84650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.46850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.84650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 62.46850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 843 REMARK 465 ALA A 844 REMARK 465 ASP A 845 REMARK 465 LEU A 846 REMARK 465 GLN A 1279 REMARK 465 LYS A 1280 REMARK 465 ASP A 1281 REMARK 465 TYR A 1282 REMARK 465 ALA A 1283 REMARK 465 LEU A 1284 REMARK 465 ILE A 1285 REMARK 465 ASP A 1286 REMARK 465 GLN A 1287 REMARK 465 GLY B 843 REMARK 465 ALA B 844 REMARK 465 LEU B 1275 REMARK 465 ARG B 1276 REMARK 465 ILE B 1277 REMARK 465 SER B 1278 REMARK 465 GLN B 1279 REMARK 465 LYS B 1280 REMARK 465 ASP B 1281 REMARK 465 TYR B 1282 REMARK 465 ALA B 1283 REMARK 465 LEU B 1284 REMARK 465 ILE B 1285 REMARK 465 ASP B 1286 REMARK 465 GLN B 1287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A1145 CG OD1 OD2 REMARK 470 LYS A1147 CG CD CE NZ REMARK 470 ARG A1181 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1186 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1188 CG CD CE NZ REMARK 470 ARG A1276 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 970 CG CD OE1 OE2 REMARK 470 ARG B1026 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1031 CG CD OE1 OE2 REMARK 470 LYS B1147 CG CD CE NZ REMARK 470 ARG B1181 CG CD NE CZ NH1 NH2 REMARK 470 MET B1185 CG SD CE REMARK 470 ARG B1186 CG CD NE CZ NH1 NH2 REMARK 470 LYS B1188 CG CD CE NZ REMARK 470 GLU B1261 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B1268 CD GLU B1268 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B1137 CB - CG - CD1 ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 870 -160.32 -125.93 REMARK 500 LEU A 960 34.45 -97.04 REMARK 500 ASP A1145 86.62 -61.75 REMARK 500 ARG A1186 -167.71 53.98 REMARK 500 MET A1198 56.19 -116.81 REMARK 500 SER B 870 -160.34 -126.30 REMARK 500 ARG B1026 60.88 -115.38 REMARK 500 LYS B1147 19.31 57.59 REMARK 500 MET B1198 56.25 -118.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 1185 ARG A 1186 149.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1529 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A1530 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A1531 DISTANCE = 9.23 ANGSTROMS REMARK 525 HOH A1532 DISTANCE = 9.59 ANGSTROMS REMARK 525 HOH B1485 DISTANCE = 6.97 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1301 DBREF1 5T3E A 844 1287 UNP A0A0N0Y601_THEVU DBREF2 5T3E A A0A0N0Y601 844 1287 DBREF1 5T3E B 844 1287 UNP A0A0N0Y601_THEVU DBREF2 5T3E B A0A0N0Y601 844 1287 SEQADV 5T3E GLY A 843 UNP A0A0N0Y60 EXPRESSION TAG SEQADV 5T3E GLY B 843 UNP A0A0N0Y60 EXPRESSION TAG SEQRES 1 A 445 GLY ALA ASP LEU SER GLU PRO PHE SER LEU THR GLU VAL SEQRES 2 A 445 GLN THR ALA TYR MET LEU GLY ARG ASN PRO GLN PHE GLU SEQRES 3 A 445 LEU SER GLY ILE SER PRO GLN THR TYR PHE GLU TYR GLU SEQRES 4 A 445 THR GLU LEU ASP ILE ALA ARG LEU SER ARG SER PHE GLN SEQRES 5 A 445 LYS VAL ILE GLN ARG HIS PRO MET LEU ARG ALA VAL ILE SEQRES 6 A 445 LEU PRO GLU GLY LYS GLN GLN ILE LEU ARG ASP VAL PRO SEQRES 7 A 445 GLU TYR GLU ILE GLU VAL GLU SER LEU VAL SER MET PRO SEQRES 8 A 445 PRO GLU LYS GLN ALA ALA ARG LEU ARG GLU GLU ARG SER SEQRES 9 A 445 ARG MET ILE ASP HIS VAL PHE PRO LEU GLY GLN TRP PRO SEQRES 10 A 445 LEU PHE GLU LEU LYS ALA PHE GLN LEU GLN GLU HIS THR SEQRES 11 A 445 TYR LEU LEU CYS PHE ARG TYR ASP ALA LEU LEU MET ASP SEQRES 12 A 445 GLY ALA SER MET ASN LEU VAL GLY GLN ASP LEU MET HIS SEQRES 13 A 445 TYR TYR HIS GLN PRO ASP ALA GLN LEU PRO PRO LEU SER SEQRES 14 A 445 PHE THR PHE GLN ASP TYR MET HIS ILE TYR ASP ASP MET SEQRES 15 A 445 LYS ARG GLY THR GLU TYR GLU THR ALA LYS ALA TYR TRP SEQRES 16 A 445 THR ASN LYS LEU PRO ASP PHE PRO PRO ALA PRO SER LEU SEQRES 17 A 445 LEU LEU ALA LYS ASP PRO ALA GLU ILE GLY THR PRO ASN SEQRES 18 A 445 PHE GLN SER LEU THR THR ILE ILE THR LYS ASP LYS TRP SEQRES 19 A 445 LEU LYS LEU ARG ARG LEU ALA GLN ASP LYS GLN VAL THR SEQRES 20 A 445 PRO SER ALA LEU LEU CYS THR VAL TYR GLY GLU VAL LEU SEQRES 21 A 445 ALA PHE TRP SER ASN GLN ARG ARG LEU ALA ILE ASN LEU SEQRES 22 A 445 THR VAL PHE ASN ARG TYR PRO VAL HIS ASP GLU VAL GLU SEQRES 23 A 445 GLN ILE VAL GLY ASP PHE THR SER LEU ILE LEU LEU ASP SEQRES 24 A 445 MET ASP MET ASP GLN LYS GLN PRO PHE PHE THR LYS VAL SEQRES 25 A 445 GLU GLN THR GLN SER THR LEU LEU ASP GLY LEU GLU HIS SEQRES 26 A 445 ARG HIS TYR ASP GLY VAL GLU PHE ILE ARG ASP TYR THR SEQRES 27 A 445 ARG TYR HIS GLN MET ARG PRO LYS ALA VAL MET PRO ILE SEQRES 28 A 445 VAL PHE THR SER MET LEU ALA GLY ALA GLY ALA PHE ALA SEQRES 29 A 445 TRP GLU GLU ILE GLY SER LEU ARG HIS ILE HIS ALA ARG SEQRES 30 A 445 THR PRO GLN VAL TYR LEU ASP ASN VAL VAL ILE GLU LYS SEQRES 31 A 445 ASN GLY GLU LEU LEU VAL SER TRP ASN TYR VAL GLU GLU SEQRES 32 A 445 LEU PHE ASP ALA GLU VAL MET GLU SER MET PHE THR GLN SEQRES 33 A 445 PHE VAL GLU LEU LEU ASP GLN LEU VAL GLU GLN GLY ASP SEQRES 34 A 445 ILE ASN PRO LEU ARG ILE SER GLN LYS ASP TYR ALA LEU SEQRES 35 A 445 ILE ASP GLN SEQRES 1 B 445 GLY ALA ASP LEU SER GLU PRO PHE SER LEU THR GLU VAL SEQRES 2 B 445 GLN THR ALA TYR MET LEU GLY ARG ASN PRO GLN PHE GLU SEQRES 3 B 445 LEU SER GLY ILE SER PRO GLN THR TYR PHE GLU TYR GLU SEQRES 4 B 445 THR GLU LEU ASP ILE ALA ARG LEU SER ARG SER PHE GLN SEQRES 5 B 445 LYS VAL ILE GLN ARG HIS PRO MET LEU ARG ALA VAL ILE SEQRES 6 B 445 LEU PRO GLU GLY LYS GLN GLN ILE LEU ARG ASP VAL PRO SEQRES 7 B 445 GLU TYR GLU ILE GLU VAL GLU SER LEU VAL SER MET PRO SEQRES 8 B 445 PRO GLU LYS GLN ALA ALA ARG LEU ARG GLU GLU ARG SER SEQRES 9 B 445 ARG MET ILE ASP HIS VAL PHE PRO LEU GLY GLN TRP PRO SEQRES 10 B 445 LEU PHE GLU LEU LYS ALA PHE GLN LEU GLN GLU HIS THR SEQRES 11 B 445 TYR LEU LEU CYS PHE ARG TYR ASP ALA LEU LEU MET ASP SEQRES 12 B 445 GLY ALA SER MET ASN LEU VAL GLY GLN ASP LEU MET HIS SEQRES 13 B 445 TYR TYR HIS GLN PRO ASP ALA GLN LEU PRO PRO LEU SER SEQRES 14 B 445 PHE THR PHE GLN ASP TYR MET HIS ILE TYR ASP ASP MET SEQRES 15 B 445 LYS ARG GLY THR GLU TYR GLU THR ALA LYS ALA TYR TRP SEQRES 16 B 445 THR ASN LYS LEU PRO ASP PHE PRO PRO ALA PRO SER LEU SEQRES 17 B 445 LEU LEU ALA LYS ASP PRO ALA GLU ILE GLY THR PRO ASN SEQRES 18 B 445 PHE GLN SER LEU THR THR ILE ILE THR LYS ASP LYS TRP SEQRES 19 B 445 LEU LYS LEU ARG ARG LEU ALA GLN ASP LYS GLN VAL THR SEQRES 20 B 445 PRO SER ALA LEU LEU CYS THR VAL TYR GLY GLU VAL LEU SEQRES 21 B 445 ALA PHE TRP SER ASN GLN ARG ARG LEU ALA ILE ASN LEU SEQRES 22 B 445 THR VAL PHE ASN ARG TYR PRO VAL HIS ASP GLU VAL GLU SEQRES 23 B 445 GLN ILE VAL GLY ASP PHE THR SER LEU ILE LEU LEU ASP SEQRES 24 B 445 MET ASP MET ASP GLN LYS GLN PRO PHE PHE THR LYS VAL SEQRES 25 B 445 GLU GLN THR GLN SER THR LEU LEU ASP GLY LEU GLU HIS SEQRES 26 B 445 ARG HIS TYR ASP GLY VAL GLU PHE ILE ARG ASP TYR THR SEQRES 27 B 445 ARG TYR HIS GLN MET ARG PRO LYS ALA VAL MET PRO ILE SEQRES 28 B 445 VAL PHE THR SER MET LEU ALA GLY ALA GLY ALA PHE ALA SEQRES 29 B 445 TRP GLU GLU ILE GLY SER LEU ARG HIS ILE HIS ALA ARG SEQRES 30 B 445 THR PRO GLN VAL TYR LEU ASP ASN VAL VAL ILE GLU LYS SEQRES 31 B 445 ASN GLY GLU LEU LEU VAL SER TRP ASN TYR VAL GLU GLU SEQRES 32 B 445 LEU PHE ASP ALA GLU VAL MET GLU SER MET PHE THR GLN SEQRES 33 B 445 PHE VAL GLU LEU LEU ASP GLN LEU VAL GLU GLN GLY ASP SEQRES 34 B 445 ILE ASN PRO LEU ARG ILE SER GLN LYS ASP TYR ALA LEU SEQRES 35 B 445 ILE ASP GLN HET SO4 A1301 5 HET SO4 B1301 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *217(H2 O) HELIX 1 AA1 THR A 853 GLY A 862 1 10 HELIX 2 AA2 ASP A 885 HIS A 900 1 16 HELIX 3 AA3 PRO A 901 LEU A 903 5 3 HELIX 4 AA4 PRO A 933 HIS A 951 1 19 HELIX 5 AA5 ASP A 985 GLN A 1002 1 18 HELIX 6 AA6 THR A 1013 LYS A 1025 1 13 HELIX 7 AA7 GLY A 1027 LEU A 1041 1 15 HELIX 8 AA8 ASP A 1055 ILE A 1059 5 5 HELIX 9 AA9 THR A 1072 LYS A 1086 1 15 HELIX 10 AB1 THR A 1089 ASN A 1107 1 19 HELIX 11 AB2 GLU A 1126 ILE A 1130 5 5 HELIX 12 AB3 PRO A 1149 GLU A 1166 1 18 HELIX 13 AB4 ASP A 1171 HIS A 1183 1 13 HELIX 14 AB5 PHE A 1205 GLU A 1209 5 5 HELIX 15 AB6 GLU A 1245 PHE A 1247 5 3 HELIX 16 AB7 ASP A 1248 GLY A 1270 1 23 HELIX 17 AB8 THR B 853 GLY B 862 1 10 HELIX 18 AB9 ASP B 885 HIS B 900 1 16 HELIX 19 AC1 PRO B 901 LEU B 903 5 3 HELIX 20 AC2 PRO B 933 HIS B 951 1 19 HELIX 21 AC3 ASP B 985 GLN B 1002 1 18 HELIX 22 AC4 THR B 1013 LYS B 1025 1 13 HELIX 23 AC5 GLY B 1027 LYS B 1040 1 14 HELIX 24 AC6 ASP B 1055 ILE B 1059 5 5 HELIX 25 AC7 THR B 1072 LYS B 1086 1 15 HELIX 26 AC8 THR B 1089 ASN B 1107 1 19 HELIX 27 AC9 GLU B 1126 ILE B 1130 5 5 HELIX 28 AD1 PRO B 1149 GLU B 1166 1 18 HELIX 29 AD2 ASP B 1171 GLN B 1184 1 14 HELIX 30 AD3 PHE B 1205 GLU B 1209 5 5 HELIX 31 AD4 GLU B 1245 PHE B 1247 5 3 HELIX 32 AD5 ASP B 1248 GLY B 1270 1 23 SHEET 1 AA1 3 PHE A 850 SER A 851 0 SHEET 2 AA1 3 LYS A 912 ILE A 915 -1 O GLN A 913 N PHE A 850 SHEET 3 AA1 3 ALA A 905 LEU A 908 -1 N LEU A 908 O LYS A 912 SHEET 1 AA2 5 GLU A 925 SER A 928 0 SHEET 2 AA2 5 PHE A 961 GLN A 969 1 O ALA A 965 N GLU A 925 SHEET 3 AA2 5 THR A 972 ASP A 980 -1 O CYS A 976 N LYS A 964 SHEET 4 AA2 5 GLN A 875 THR A 882 -1 N TYR A 880 O LEU A 975 SHEET 5 AA2 5 GLY A1211 ARG A1219 -1 O ARG A1214 N GLU A 879 SHEET 1 AA3 6 PHE A1064 ILE A1071 0 SHEET 2 AA3 6 GLU A1235 VAL A1243 -1 O LEU A1236 N ILE A1071 SHEET 3 AA3 6 LEU A1225 LYS A1232 -1 N LYS A1232 O GLU A1235 SHEET 4 AA3 6 ILE A1193 MET A1198 1 N THR A1196 O ASN A1227 SHEET 5 AA3 6 ARG A1110 VAL A1117 1 N ASN A1114 O ILE A1193 SHEET 6 AA3 6 SER A1136 ASP A1143 -1 O LEU A1140 N ILE A1113 SHEET 1 AA4 3 PHE B 850 SER B 851 0 SHEET 2 AA4 3 LYS B 912 ILE B 915 -1 O GLN B 913 N PHE B 850 SHEET 3 AA4 3 ALA B 905 LEU B 908 -1 N LEU B 908 O LYS B 912 SHEET 1 AA5 5 GLU B 925 SER B 928 0 SHEET 2 AA5 5 PHE B 961 GLN B 969 1 O ALA B 965 N GLU B 925 SHEET 3 AA5 5 THR B 972 ASP B 980 -1 O CYS B 976 N LYS B 964 SHEET 4 AA5 5 GLN B 875 THR B 882 -1 N TYR B 880 O LEU B 975 SHEET 5 AA5 5 GLY B1211 ARG B1219 -1 O HIS B1217 N TYR B 877 SHEET 1 AA6 6 PHE B1064 ILE B1071 0 SHEET 2 AA6 6 GLU B1235 VAL B1243 -1 O LEU B1236 N ILE B1071 SHEET 3 AA6 6 LEU B1225 LYS B1232 -1 N ILE B1230 O LEU B1237 SHEET 4 AA6 6 ILE B1193 MET B1198 1 N THR B1196 O ASN B1227 SHEET 5 AA6 6 ARG B1110 VAL B1117 1 N ASN B1114 O ILE B1193 SHEET 6 AA6 6 SER B1136 ASP B1143 -1 O LEU B1140 N ILE B1113 CISPEP 1 TRP A 958 PRO A 959 0 1.06 CISPEP 2 TRP B 958 PRO B 959 0 0.42 SITE 1 AC1 2 ARG A 888 HIS A1001 SITE 1 AC2 2 ARG B 888 HIS B1001 CRYST1 139.693 124.937 68.925 90.00 95.66 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007159 0.000000 0.000709 0.00000 SCALE2 0.000000 0.008004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014580 0.00000