data_5T3K # _entry.id 5T3K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5T3K pdb_00005t3k 10.2210/pdb5t3k/pdb WWPDB D_1000223514 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-07-05 2 'Structure model' 1 1 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_conn_angle 5 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.value' 19 2 'Structure model' '_struct_conn.conn_type_id' 20 2 'Structure model' '_struct_conn.id' 21 2 'Structure model' '_struct_conn.pdbx_dist_value' 22 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 2 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5T3K _pdbx_database_status.recvd_initial_deposition_date 2016-08-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hermann, T.' 1 'Boerneke, M.A.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Angew. Chem. Int. Ed. Engl.' _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 56 _citation.language ? _citation.page_first 2640 _citation.page_last 2644 _citation.title 'Structure of the Ribosomal RNA Decoding Site Containing a Selenium-Modified Responsive Fluorescent Ribonucleoside Probe.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201611700 _citation.pdbx_database_id_PubMed 28156044 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nuthanakanti, A.' 1 ? primary 'Boerneke, M.A.' 2 ? primary 'Hermann, T.' 3 ? primary 'Srivatsan, S.G.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*UP*GP*G)-3') ; 5555.333 2 ? ? ? ? 2 polymer syn ;RNA (5'-R(*CP*AP*GP*CP*GP*(75B)P*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3') ; 5144.098 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 10 ? ? ? ? 4 water nat water 18.015 60 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGUGGUGAAGUCGCUGG GGUGGUGAAGUCGCUGG A,C ? 2 polyribonucleotide no yes 'CAGCG(75B)CACACCACCC' CAGCGXCACACCACCC B,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 G n 1 5 G n 1 6 U n 1 7 G n 1 8 A n 1 9 A n 1 10 G n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 U n 1 16 G n 1 17 G n 2 1 C n 2 2 A n 2 3 G n 2 4 C n 2 5 G n 2 6 75B n 2 7 C n 2 8 A n 2 9 C n 2 10 A n 2 11 C n 2 12 C n 2 13 A n 2 14 C n 2 15 C n 2 16 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 17 'synthetic construct' ? 32630 ? 2 1 sample 1 16 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 75B 'RNA linking' n ;5-selenophen-2-yluridine 5'-(dihydrogen phosphate) ; ? 'C13 H15 N2 O9 P Se' 453.200 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 U 15 15 15 U U A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n B 2 1 C 1 20 20 C C B . n B 2 2 A 2 21 21 A A B . n B 2 3 G 3 22 22 G G B . n B 2 4 C 4 23 23 C C B . n B 2 5 G 5 24 24 G G B . n B 2 6 75B 6 25 25 75B U5S B . n B 2 7 C 7 26 26 C C B . n B 2 8 A 8 27 27 A A B . n B 2 9 C 9 28 28 C C B . n B 2 10 A 10 29 29 A A B . n B 2 11 C 11 30 30 C C B . n B 2 12 C 12 31 31 C C B . n B 2 13 A 13 32 32 A A B . n B 2 14 C 14 33 33 C C B . n B 2 15 C 15 34 34 C C B . n B 2 16 C 16 35 35 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 G 2 2 2 G G C . n C 1 3 U 3 3 3 U U C . n C 1 4 G 4 4 4 G G C . n C 1 5 G 5 5 5 G G C . n C 1 6 U 6 6 6 U U C . n C 1 7 G 7 7 7 G G C . n C 1 8 A 8 8 8 A A C . n C 1 9 A 9 9 9 A A C . n C 1 10 G 10 10 10 G G C . n C 1 11 U 11 11 11 U U C . n C 1 12 C 12 12 12 C C C . n C 1 13 G 13 13 13 G G C . n C 1 14 C 14 14 14 C C C . n C 1 15 U 15 15 15 U U C . n C 1 16 G 16 16 16 G G C . n C 1 17 G 17 17 17 G G C . n D 2 1 C 1 20 20 C C D . n D 2 2 A 2 21 21 A A D . n D 2 3 G 3 22 22 G G D . n D 2 4 C 4 23 23 C C D . n D 2 5 G 5 24 24 G G D . n D 2 6 75B 6 25 25 75B U5S D . n D 2 7 C 7 26 26 C C D . n D 2 8 A 8 27 27 A A D . n D 2 9 C 9 28 28 C C D . n D 2 10 A 10 29 29 A A D . n D 2 11 C 11 30 30 C C D . n D 2 12 C 12 31 31 C C D . n D 2 13 A 13 32 32 A A D . n D 2 14 C 14 33 33 C C D . n D 2 15 C 15 34 34 C C D . n D 2 16 C 16 35 35 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG 1 101 1 MG MG A . F 3 MG 1 102 2 MG MG A . G 3 MG 1 101 5 MG MG B . H 3 MG 1 102 10 MG MG B . I 3 MG 1 101 3 MG MG C . J 3 MG 1 102 6 MG MG C . K 3 MG 1 103 7 MG MG C . L 3 MG 1 104 8 MG MG C . M 3 MG 1 101 4 MG MG D . N 3 MG 1 102 9 MG MG D . O 4 HOH 1 201 21 HOH HOH A . O 4 HOH 2 202 45 HOH HOH A . O 4 HOH 3 203 27 HOH HOH A . O 4 HOH 4 204 14 HOH HOH A . O 4 HOH 5 205 32 HOH HOH A . O 4 HOH 6 206 52 HOH HOH A . O 4 HOH 7 207 17 HOH HOH A . O 4 HOH 8 208 34 HOH HOH A . O 4 HOH 9 209 58 HOH HOH A . O 4 HOH 10 210 24 HOH HOH A . O 4 HOH 11 211 50 HOH HOH A . O 4 HOH 12 212 60 HOH HOH A . O 4 HOH 13 213 20 HOH HOH A . O 4 HOH 14 214 57 HOH HOH A . O 4 HOH 15 215 18 HOH HOH A . O 4 HOH 16 216 4 HOH HOH A . O 4 HOH 17 217 5 HOH HOH A . O 4 HOH 18 218 44 HOH HOH A . O 4 HOH 19 219 23 HOH HOH A . O 4 HOH 20 220 35 HOH HOH A . O 4 HOH 21 221 25 HOH HOH A . O 4 HOH 22 222 29 HOH HOH A . P 4 HOH 1 201 56 HOH HOH B . P 4 HOH 2 202 22 HOH HOH B . P 4 HOH 3 203 11 HOH HOH B . P 4 HOH 4 204 16 HOH HOH B . P 4 HOH 5 205 59 HOH HOH B . P 4 HOH 6 206 28 HOH HOH B . P 4 HOH 7 207 55 HOH HOH B . P 4 HOH 8 208 3 HOH HOH B . P 4 HOH 9 209 41 HOH HOH B . P 4 HOH 10 210 42 HOH HOH B . P 4 HOH 11 211 43 HOH HOH B . Q 4 HOH 1 201 1 HOH HOH C . Q 4 HOH 2 202 8 HOH HOH C . Q 4 HOH 3 203 6 HOH HOH C . Q 4 HOH 4 204 10 HOH HOH C . Q 4 HOH 5 205 7 HOH HOH C . Q 4 HOH 6 206 40 HOH HOH C . Q 4 HOH 7 207 26 HOH HOH C . Q 4 HOH 8 208 31 HOH HOH C . Q 4 HOH 9 209 46 HOH HOH C . Q 4 HOH 10 210 36 HOH HOH C . Q 4 HOH 11 211 48 HOH HOH C . Q 4 HOH 12 212 39 HOH HOH C . Q 4 HOH 13 213 38 HOH HOH C . R 4 HOH 1 201 37 HOH HOH D . R 4 HOH 2 202 12 HOH HOH D . R 4 HOH 3 203 13 HOH HOH D . R 4 HOH 4 204 30 HOH HOH D . R 4 HOH 5 205 54 HOH HOH D . R 4 HOH 6 206 33 HOH HOH D . R 4 HOH 7 207 19 HOH HOH D . R 4 HOH 8 208 9 HOH HOH D . R 4 HOH 9 209 2 HOH HOH D . R 4 HOH 10 210 51 HOH HOH D . R 4 HOH 11 211 53 HOH HOH D . R 4 HOH 12 212 47 HOH HOH D . R 4 HOH 13 213 49 HOH HOH D . R 4 HOH 14 214 15 HOH HOH D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_2313 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 94.14 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5T3K _cell.details ? _cell.formula_units_Z ? _cell.length_a 31.553 _cell.length_a_esd ? _cell.length_b 86.956 _cell.length_b_esd ? _cell.length_c 32.564 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5T3K _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2mM RNA, 2.40-2.55M ammonium sulfate, 10mM magnesium acetate, 40mM2-(N-morpholino)ethanesulfonic acid (MES) buffer, pH 5.6' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-02-12 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU FR-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5T3K _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.14 _reflns.d_resolution_low 26.02 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7483 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 77.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.32 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.14 _reflns_shell.d_res_low 2.22 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.25 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 46.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 1.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 32.6 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5T3K _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.142 _refine.ls_d_res_low 26.020 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7483 _refine.ls_number_reflns_R_free 726 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 77.41 _refine.ls_percent_reflns_R_free 9.70 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2028 _refine.ls_R_factor_R_free 0.2465 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1974 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.64 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.33 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1408 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 1478 _refine_hist.d_res_high 2.142 _refine_hist.d_res_low 26.020 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 1572 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.366 ? 2444 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 20.892 ? 816 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.049 ? 316 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 68 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.1424 2.3077 . . 85 816 47.00 . . . 0.4037 . 0.3191 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3077 2.5398 . . 149 1298 76.00 . . . 0.3035 . 0.2597 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5398 2.9069 . . 151 1538 86.00 . . . 0.3480 . 0.2642 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9069 3.6608 . . 163 1548 89.00 . . . 0.2659 . 0.1991 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6608 26.0223 . . 178 1557 89.00 . . . 0.1792 . 0.1455 . . . . . . . . . . # _struct.entry_id 5T3K _struct.title ;Fluorescence detection of RNA-ligand binding and crystal structure determination of ribosomal decoding site RNA using a heavy atom containing fluorescent ribonucleoside ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5T3K _struct_keywords.text 'bacterial decoding site RNA, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5T3K 5T3K ? 1 ? 1 2 PDB 5T3K 5T3K ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5T3K A 1 ? 17 ? 5T3K 1 ? 17 ? 1 17 2 2 5T3K B 1 ? 16 ? 5T3K 20 ? 35 ? 20 35 3 1 5T3K C 1 ? 17 ? 5T3K 1 ? 17 ? 1 17 4 2 5T3K D 1 ? 16 ? 5T3K 20 ? 35 ? 20 35 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2090 ? 1 MORE -37 ? 1 'SSA (A^2)' 6120 ? 2 'ABSA (A^2)' 2080 ? 2 MORE -41 ? 2 'SSA (A^2)' 6240 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,O,P 2 1 C,D,I,J,K,L,M,N,Q,R # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B G 5 "O3'" ? ? ? 1_555 B 75B 6 P ? ? B G 24 B 75B 25 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale one ? B 75B 6 "O3'" ? ? ? 1_555 B C 7 P ? ? B 75B 25 B C 26 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale3 covale both ? D G 5 "O3'" ? ? ? 1_555 D 75B 6 P ? ? D G 24 D 75B 25 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale4 covale one ? D 75B 6 "O3'" ? ? ? 1_555 D C 7 P ? ? D 75B 25 D C 26 1_555 ? ? ? ? ? ? ? 1.593 ? ? metalc1 metalc ? ? A U 11 "O2'" ? ? ? 1_555 L MG . MG ? ? A U 11 C MG 104 1_556 ? ? ? ? ? ? ? 2.993 ? ? metalc2 metalc ? ? F MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 102 A HOH 207 1_555 ? ? ? ? ? ? ? 2.965 ? ? metalc3 metalc ? ? B C 7 O2 ? ? ? 1_555 L MG . MG ? ? B C 26 C MG 104 1_556 ? ? ? ? ? ? ? 2.988 ? ? metalc4 metalc ? ? G MG . MG ? ? ? 1_555 P HOH . O ? ? B MG 101 B HOH 203 1_555 ? ? ? ? ? ? ? 2.892 ? ? metalc5 metalc ? ? H MG . MG ? ? ? 1_555 P HOH . O ? ? B MG 102 B HOH 205 1_555 ? ? ? ? ? ? ? 2.627 ? ? metalc6 metalc ? ? H MG . MG ? ? ? 1_555 P HOH . O ? ? B MG 102 B HOH 207 1_555 ? ? ? ? ? ? ? 2.785 ? ? metalc7 metalc ? ? C U 3 "O3'" ? ? ? 1_555 L MG . MG ? ? C U 3 C MG 104 1_555 ? ? ? ? ? ? ? 2.972 ? ? metalc8 metalc ? ? C G 4 OP1 ? ? ? 1_555 L MG . MG ? ? C G 4 C MG 104 1_555 ? ? ? ? ? ? ? 2.910 ? ? metalc9 metalc ? ? C C 12 OP2 ? ? ? 1_555 K MG . MG ? ? C C 12 C MG 103 1_555 ? ? ? ? ? ? ? 2.219 ? ? metalc10 metalc ? ? Q HOH . O ? ? ? 1_555 M MG . MG ? ? C HOH 213 D MG 101 1_555 ? ? ? ? ? ? ? 2.793 ? ? metalc11 metalc ? ? N MG . MG ? ? ? 1_555 R HOH . O ? ? D MG 102 D HOH 205 1_555 ? ? ? ? ? ? ? 2.656 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 1 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 1 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 1 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 2 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 2 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 2 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 13 N1 ? ? A U 3 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 13 N6 ? ? A U 3 B A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 4 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 4 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 4 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 5 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 5 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 5 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 6 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 6 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 7 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 7 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 7 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 8 N1 ? ? ? 1_555 B A 8 N6 ? ? A A 8 B A 27 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog21 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 10 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 10 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 10 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 12 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 12 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 12 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 13 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 13 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 13 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 15 N3 ? ? ? 1_555 B A 2 N1 ? ? A U 15 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 15 O4 ? ? ? 1_555 B A 2 N6 ? ? A U 15 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 16 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 16 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 16 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 15 N3 ? ? C G 1 D C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 15 O2 ? ? C G 1 D C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 15 N4 ? ? C G 1 D C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 14 N3 ? ? C G 2 D C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 14 O2 ? ? C G 2 D C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 14 N4 ? ? C G 2 D C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C U 3 N3 ? ? ? 1_555 D A 13 N1 ? ? C U 3 D A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C U 3 O4 ? ? ? 1_555 D A 13 N6 ? ? C U 3 D A 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C G 4 N1 ? ? ? 1_555 D C 12 N3 ? ? C G 4 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C G 4 N2 ? ? ? 1_555 D C 12 O2 ? ? C G 4 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 4 O6 ? ? ? 1_555 D C 12 N4 ? ? C G 4 D C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C G 5 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 5 D C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C G 5 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 5 D C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C G 5 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 5 D C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C U 6 N3 ? ? ? 1_555 D A 10 N1 ? ? C U 6 D A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C U 6 O4 ? ? ? 1_555 D A 10 N6 ? ? C U 6 D A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C G 7 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 7 D C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C G 7 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 7 D C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C G 7 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 7 D C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 10 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 10 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 10 D C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C C 12 N3 ? ? ? 1_555 D G 5 N1 ? ? C C 12 D G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 5 O6 ? ? C C 12 D G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 5 N2 ? ? C C 12 D G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 13 N1 ? ? ? 1_555 D C 4 N3 ? ? C G 13 D C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 13 N2 ? ? ? 1_555 D C 4 O2 ? ? C G 13 D C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 13 O6 ? ? ? 1_555 D C 4 N4 ? ? C G 13 D C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C C 14 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 14 D G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C C 14 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 14 D G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C C 14 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 14 D G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C U 15 N3 ? ? ? 1_555 D A 2 N1 ? ? C U 15 D A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C U 15 O4 ? ? ? 1_555 D A 2 N6 ? ? C U 15 D A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C G 16 N1 ? ? ? 1_555 D C 1 N3 ? ? C G 16 D C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C G 16 N2 ? ? ? 1_555 D C 1 O2 ? ? C G 16 D C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C G 16 O6 ? ? ? 1_555 D C 1 N4 ? ? C G 16 D C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O2'" ? A U 11 ? A U 11 ? 1_555 MG ? L MG . ? C MG 104 ? 1_556 O2 ? B C 7 ? B C 26 ? 1_555 132.4 ? 2 "O2'" ? A U 11 ? A U 11 ? 1_555 MG ? L MG . ? C MG 104 ? 1_556 "O3'" ? C U 3 ? C U 3 ? 1_555 109.2 ? 3 O2 ? B C 7 ? B C 26 ? 1_555 MG ? L MG . ? C MG 104 ? 1_556 "O3'" ? C U 3 ? C U 3 ? 1_555 60.6 ? 4 "O2'" ? A U 11 ? A U 11 ? 1_555 MG ? L MG . ? C MG 104 ? 1_556 OP1 ? C G 4 ? C G 4 ? 1_555 112.8 ? 5 O2 ? B C 7 ? B C 26 ? 1_555 MG ? L MG . ? C MG 104 ? 1_556 OP1 ? C G 4 ? C G 4 ? 1_555 56.4 ? 6 "O3'" ? C U 3 ? C U 3 ? 1_555 MG ? L MG . ? C MG 104 ? 1_556 OP1 ? C G 4 ? C G 4 ? 1_555 4.4 ? 7 O ? P HOH . ? B HOH 205 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 O ? P HOH . ? B HOH 207 ? 1_555 127.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 1 'binding site for residue MG A 101' AC2 Software A MG 102 ? 3 'binding site for residue MG A 102' AC3 Software B MG 101 ? 3 'binding site for residue MG B 101' AC4 Software B MG 102 ? 4 'binding site for residue MG B 102' AC5 Software C MG 101 ? 2 'binding site for residue MG C 101' AC6 Software C MG 102 ? 1 'binding site for residue MG C 102' AC7 Software C MG 103 ? 1 'binding site for residue MG C 103' AC8 Software C MG 104 ? 4 'binding site for residue MG C 104' AC9 Software D MG 101 ? 2 'binding site for residue MG D 101' AD1 Software D MG 102 ? 4 'binding site for residue MG D 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 G A 4 ? G A 4 . ? 1_555 ? 2 AC2 3 U A 3 ? U A 3 . ? 1_555 ? 3 AC2 3 G A 4 ? G A 4 . ? 1_555 ? 4 AC2 3 HOH O . ? HOH A 207 . ? 1_555 ? 5 AC3 3 C B 4 ? C B 23 . ? 1_555 ? 6 AC3 3 G B 5 ? G B 24 . ? 1_555 ? 7 AC3 3 HOH P . ? HOH B 203 . ? 1_555 ? 8 AC4 4 C B 7 ? C B 26 . ? 1_555 ? 9 AC4 4 A B 8 ? A B 27 . ? 1_555 ? 10 AC4 4 HOH P . ? HOH B 205 . ? 1_555 ? 11 AC4 4 HOH P . ? HOH B 207 . ? 1_555 ? 12 AC5 2 U C 3 ? U C 3 . ? 1_555 ? 13 AC5 2 G C 4 ? G C 4 . ? 1_555 ? 14 AC6 1 G C 1 ? G C 1 . ? 1_555 ? 15 AC7 1 C C 12 ? C C 12 . ? 1_555 ? 16 AC8 4 U A 11 ? U A 11 . ? 1_554 ? 17 AC8 4 C B 7 ? C B 26 . ? 1_554 ? 18 AC8 4 U C 3 ? U C 3 . ? 1_555 ? 19 AC8 4 G C 4 ? G C 4 . ? 1_555 ? 20 AC9 2 HOH Q . ? HOH C 213 . ? 1_555 ? 21 AC9 2 G D 5 ? G D 24 . ? 1_555 ? 22 AD1 4 C D 7 ? C D 26 . ? 1_555 ? 23 AD1 4 A D 8 ? A D 27 . ? 1_555 ? 24 AD1 4 C D 9 ? C D 28 . ? 1_555 ? 25 AD1 4 HOH R . ? HOH D 205 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A G 2 ? ? C6 A G 2 ? ? O6 A G 2 ? ? 116.00 119.90 -3.90 0.60 N 2 1 "O5'" C G 10 ? ? P C G 10 ? ? OP1 C G 10 ? ? 99.07 105.70 -6.63 0.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 75B P P N N 1 75B "C5'" C N N 2 75B "O5'" O N N 3 75B "C4'" C N R 4 75B "O4'" O N N 5 75B "C3'" C N S 6 75B "O3'" O N N 7 75B "C2'" C N R 8 75B "O2'" O N N 9 75B "C1'" C N R 10 75B N1 N N N 11 75B C2 C N N 12 75B O2 O N N 13 75B N3 N N N 14 75B C4 C N N 15 75B O4 O N N 16 75B C5 C N N 17 75B C6 C N N 18 75B C22 C Y N 19 75B C33 C Y N 20 75B C44 C Y N 21 75B C55 C Y N 22 75B OP1 O N N 23 75B OP2 O N N 24 75B SE1 SE Y N 25 75B H1 H N N 26 75B H2 H N N 27 75B H3 H N N 28 75B H4 H N N 29 75B H5 H N N 30 75B H6 H N N 31 75B H7 H N N 32 75B H8 H N N 33 75B H9 H N N 34 75B H10 H N N 35 75B H11 H N N 36 75B H12 H N N 37 75B H13 H N N 38 75B H14 H N N 39 75B OP3 O N N 40 75B HOP3 H N N 41 A OP3 O N N 42 A P P N N 43 A OP1 O N N 44 A OP2 O N N 45 A "O5'" O N N 46 A "C5'" C N N 47 A "C4'" C N R 48 A "O4'" O N N 49 A "C3'" C N S 50 A "O3'" O N N 51 A "C2'" C N R 52 A "O2'" O N N 53 A "C1'" C N R 54 A N9 N Y N 55 A C8 C Y N 56 A N7 N Y N 57 A C5 C Y N 58 A C6 C Y N 59 A N6 N N N 60 A N1 N Y N 61 A C2 C Y N 62 A N3 N Y N 63 A C4 C Y N 64 A HOP3 H N N 65 A HOP2 H N N 66 A "H5'" H N N 67 A "H5''" H N N 68 A "H4'" H N N 69 A "H3'" H N N 70 A "HO3'" H N N 71 A "H2'" H N N 72 A "HO2'" H N N 73 A "H1'" H N N 74 A H8 H N N 75 A H61 H N N 76 A H62 H N N 77 A H2 H N N 78 C OP3 O N N 79 C P P N N 80 C OP1 O N N 81 C OP2 O N N 82 C "O5'" O N N 83 C "C5'" C N N 84 C "C4'" C N R 85 C "O4'" O N N 86 C "C3'" C N S 87 C "O3'" O N N 88 C "C2'" C N R 89 C "O2'" O N N 90 C "C1'" C N R 91 C N1 N N N 92 C C2 C N N 93 C O2 O N N 94 C N3 N N N 95 C C4 C N N 96 C N4 N N N 97 C C5 C N N 98 C C6 C N N 99 C HOP3 H N N 100 C HOP2 H N N 101 C "H5'" H N N 102 C "H5''" H N N 103 C "H4'" H N N 104 C "H3'" H N N 105 C "HO3'" H N N 106 C "H2'" H N N 107 C "HO2'" H N N 108 C "H1'" H N N 109 C H41 H N N 110 C H42 H N N 111 C H5 H N N 112 C H6 H N N 113 G OP3 O N N 114 G P P N N 115 G OP1 O N N 116 G OP2 O N N 117 G "O5'" O N N 118 G "C5'" C N N 119 G "C4'" C N R 120 G "O4'" O N N 121 G "C3'" C N S 122 G "O3'" O N N 123 G "C2'" C N R 124 G "O2'" O N N 125 G "C1'" C N R 126 G N9 N Y N 127 G C8 C Y N 128 G N7 N Y N 129 G C5 C Y N 130 G C6 C N N 131 G O6 O N N 132 G N1 N N N 133 G C2 C N N 134 G N2 N N N 135 G N3 N N N 136 G C4 C Y N 137 G HOP3 H N N 138 G HOP2 H N N 139 G "H5'" H N N 140 G "H5''" H N N 141 G "H4'" H N N 142 G "H3'" H N N 143 G "HO3'" H N N 144 G "H2'" H N N 145 G "HO2'" H N N 146 G "H1'" H N N 147 G H8 H N N 148 G H1 H N N 149 G H21 H N N 150 G H22 H N N 151 HOH O O N N 152 HOH H1 H N N 153 HOH H2 H N N 154 MG MG MG N N 155 U OP3 O N N 156 U P P N N 157 U OP1 O N N 158 U OP2 O N N 159 U "O5'" O N N 160 U "C5'" C N N 161 U "C4'" C N R 162 U "O4'" O N N 163 U "C3'" C N S 164 U "O3'" O N N 165 U "C2'" C N R 166 U "O2'" O N N 167 U "C1'" C N R 168 U N1 N N N 169 U C2 C N N 170 U O2 O N N 171 U N3 N N N 172 U C4 C N N 173 U O4 O N N 174 U C5 C N N 175 U C6 C N N 176 U HOP3 H N N 177 U HOP2 H N N 178 U "H5'" H N N 179 U "H5''" H N N 180 U "H4'" H N N 181 U "H3'" H N N 182 U "HO3'" H N N 183 U "H2'" H N N 184 U "HO2'" H N N 185 U "H1'" H N N 186 U H3 H N N 187 U H5 H N N 188 U H6 H N N 189 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 75B OP1 P sing N N 1 75B OP2 P doub N N 2 75B P "O5'" sing N N 3 75B C33 C22 doub Y N 4 75B C33 C44 sing Y N 5 75B C22 SE1 sing Y N 6 75B C44 C55 doub Y N 7 75B "O5'" "C5'" sing N N 8 75B "C5'" "C4'" sing N N 9 75B SE1 C55 sing Y N 10 75B C55 C5 sing N N 11 75B "C4'" "O4'" sing N N 12 75B "C4'" "C3'" sing N N 13 75B "O4'" "C1'" sing N N 14 75B C5 C6 doub N N 15 75B C5 C4 sing N N 16 75B C6 N1 sing N N 17 75B "C3'" "O3'" sing N N 18 75B "C3'" "C2'" sing N N 19 75B N1 "C1'" sing N N 20 75B N1 C2 sing N N 21 75B "C1'" "C2'" sing N N 22 75B C4 O4 doub N N 23 75B C4 N3 sing N N 24 75B "C2'" "O2'" sing N N 25 75B C2 N3 sing N N 26 75B C2 O2 doub N N 27 75B "C5'" H1 sing N N 28 75B "C5'" H2 sing N N 29 75B "C4'" H3 sing N N 30 75B "C3'" H4 sing N N 31 75B "O3'" H5 sing N N 32 75B "C2'" H6 sing N N 33 75B "O2'" H7 sing N N 34 75B "C1'" H8 sing N N 35 75B N3 H9 sing N N 36 75B C6 H10 sing N N 37 75B C22 H11 sing N N 38 75B C33 H12 sing N N 39 75B C44 H13 sing N N 40 75B OP1 H14 sing N N 41 75B P OP3 sing N N 42 75B OP3 HOP3 sing N N 43 A OP3 P sing N N 44 A OP3 HOP3 sing N N 45 A P OP1 doub N N 46 A P OP2 sing N N 47 A P "O5'" sing N N 48 A OP2 HOP2 sing N N 49 A "O5'" "C5'" sing N N 50 A "C5'" "C4'" sing N N 51 A "C5'" "H5'" sing N N 52 A "C5'" "H5''" sing N N 53 A "C4'" "O4'" sing N N 54 A "C4'" "C3'" sing N N 55 A "C4'" "H4'" sing N N 56 A "O4'" "C1'" sing N N 57 A "C3'" "O3'" sing N N 58 A "C3'" "C2'" sing N N 59 A "C3'" "H3'" sing N N 60 A "O3'" "HO3'" sing N N 61 A "C2'" "O2'" sing N N 62 A "C2'" "C1'" sing N N 63 A "C2'" "H2'" sing N N 64 A "O2'" "HO2'" sing N N 65 A "C1'" N9 sing N N 66 A "C1'" "H1'" sing N N 67 A N9 C8 sing Y N 68 A N9 C4 sing Y N 69 A C8 N7 doub Y N 70 A C8 H8 sing N N 71 A N7 C5 sing Y N 72 A C5 C6 sing Y N 73 A C5 C4 doub Y N 74 A C6 N6 sing N N 75 A C6 N1 doub Y N 76 A N6 H61 sing N N 77 A N6 H62 sing N N 78 A N1 C2 sing Y N 79 A C2 N3 doub Y N 80 A C2 H2 sing N N 81 A N3 C4 sing Y N 82 C OP3 P sing N N 83 C OP3 HOP3 sing N N 84 C P OP1 doub N N 85 C P OP2 sing N N 86 C P "O5'" sing N N 87 C OP2 HOP2 sing N N 88 C "O5'" "C5'" sing N N 89 C "C5'" "C4'" sing N N 90 C "C5'" "H5'" sing N N 91 C "C5'" "H5''" sing N N 92 C "C4'" "O4'" sing N N 93 C "C4'" "C3'" sing N N 94 C "C4'" "H4'" sing N N 95 C "O4'" "C1'" sing N N 96 C "C3'" "O3'" sing N N 97 C "C3'" "C2'" sing N N 98 C "C3'" "H3'" sing N N 99 C "O3'" "HO3'" sing N N 100 C "C2'" "O2'" sing N N 101 C "C2'" "C1'" sing N N 102 C "C2'" "H2'" sing N N 103 C "O2'" "HO2'" sing N N 104 C "C1'" N1 sing N N 105 C "C1'" "H1'" sing N N 106 C N1 C2 sing N N 107 C N1 C6 sing N N 108 C C2 O2 doub N N 109 C C2 N3 sing N N 110 C N3 C4 doub N N 111 C C4 N4 sing N N 112 C C4 C5 sing N N 113 C N4 H41 sing N N 114 C N4 H42 sing N N 115 C C5 C6 doub N N 116 C C5 H5 sing N N 117 C C6 H6 sing N N 118 G OP3 P sing N N 119 G OP3 HOP3 sing N N 120 G P OP1 doub N N 121 G P OP2 sing N N 122 G P "O5'" sing N N 123 G OP2 HOP2 sing N N 124 G "O5'" "C5'" sing N N 125 G "C5'" "C4'" sing N N 126 G "C5'" "H5'" sing N N 127 G "C5'" "H5''" sing N N 128 G "C4'" "O4'" sing N N 129 G "C4'" "C3'" sing N N 130 G "C4'" "H4'" sing N N 131 G "O4'" "C1'" sing N N 132 G "C3'" "O3'" sing N N 133 G "C3'" "C2'" sing N N 134 G "C3'" "H3'" sing N N 135 G "O3'" "HO3'" sing N N 136 G "C2'" "O2'" sing N N 137 G "C2'" "C1'" sing N N 138 G "C2'" "H2'" sing N N 139 G "O2'" "HO2'" sing N N 140 G "C1'" N9 sing N N 141 G "C1'" "H1'" sing N N 142 G N9 C8 sing Y N 143 G N9 C4 sing Y N 144 G C8 N7 doub Y N 145 G C8 H8 sing N N 146 G N7 C5 sing Y N 147 G C5 C6 sing N N 148 G C5 C4 doub Y N 149 G C6 O6 doub N N 150 G C6 N1 sing N N 151 G N1 C2 sing N N 152 G N1 H1 sing N N 153 G C2 N2 sing N N 154 G C2 N3 doub N N 155 G N2 H21 sing N N 156 G N2 H22 sing N N 157 G N3 C4 sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 U OP3 P sing N N 161 U OP3 HOP3 sing N N 162 U P OP1 doub N N 163 U P OP2 sing N N 164 U P "O5'" sing N N 165 U OP2 HOP2 sing N N 166 U "O5'" "C5'" sing N N 167 U "C5'" "C4'" sing N N 168 U "C5'" "H5'" sing N N 169 U "C5'" "H5''" sing N N 170 U "C4'" "O4'" sing N N 171 U "C4'" "C3'" sing N N 172 U "C4'" "H4'" sing N N 173 U "O4'" "C1'" sing N N 174 U "C3'" "O3'" sing N N 175 U "C3'" "C2'" sing N N 176 U "C3'" "H3'" sing N N 177 U "O3'" "HO3'" sing N N 178 U "C2'" "O2'" sing N N 179 U "C2'" "C1'" sing N N 180 U "C2'" "H2'" sing N N 181 U "O2'" "HO2'" sing N N 182 U "C1'" N1 sing N N 183 U "C1'" "H1'" sing N N 184 U N1 C2 sing N N 185 U N1 C6 sing N N 186 U C2 O2 doub N N 187 U C2 N3 sing N N 188 U N3 C4 sing N N 189 U N3 H3 sing N N 190 U C4 O4 doub N N 191 U C4 C5 sing N N 192 U C5 C6 doub N N 193 U C5 H5 sing N N 194 U C6 H6 sing N N 195 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5T3K 'double helix' 5T3K 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 15 1_555 -0.035 0.050 0.012 -2.287 -11.077 -1.026 1 A_G1:C34_B A 1 ? B 34 ? 19 1 1 A G 2 1_555 B C 14 1_555 -0.378 -0.427 -0.024 -4.280 -12.507 0.349 2 A_G2:C33_B A 2 ? B 33 ? 19 1 1 A U 3 1_555 B A 13 1_555 -0.163 -0.096 0.164 -3.433 -8.158 -3.003 3 A_U3:A32_B A 3 ? B 32 ? 20 1 1 A G 4 1_555 B C 12 1_555 -0.097 -0.046 0.051 -3.595 -11.658 -1.244 4 A_G4:C31_B A 4 ? B 31 ? 19 1 1 A G 5 1_555 B C 11 1_555 -0.482 0.080 0.358 -2.743 -16.801 3.008 5 A_G5:C30_B A 5 ? B 30 ? 19 1 1 A U 6 1_555 B A 10 1_555 0.112 -0.084 -0.069 -5.302 -19.757 8.108 6 A_U6:A29_B A 6 ? B 29 ? 20 1 1 A G 7 1_555 B C 9 1_555 -0.707 -0.114 0.247 -7.398 -12.940 0.606 7 A_G7:C28_B A 7 ? B 28 ? 19 1 1 A A 8 1_555 B A 8 1_555 2.214 1.579 0.365 0.972 -12.962 4.148 8 A_A8:A27_B A 8 ? B 27 ? ? 1 1 A G 10 1_555 B C 7 1_555 -0.111 -0.136 0.015 -7.775 -15.055 3.966 9 A_G10:C26_B A 10 ? B 26 ? 19 1 1 A C 12 1_555 B G 5 1_555 0.487 0.113 -0.480 19.982 -3.526 3.918 10 A_C12:G24_B A 12 ? B 24 ? 19 1 1 A G 13 1_555 B C 4 1_555 -0.157 -0.222 -0.121 -1.951 -9.478 1.573 11 A_G13:C23_B A 13 ? B 23 ? 19 1 1 A C 14 1_555 B G 3 1_555 0.353 -0.190 0.076 -1.134 -16.080 4.841 12 A_C14:G22_B A 14 ? B 22 ? 19 1 1 A U 15 1_555 B A 2 1_555 0.128 -0.166 0.174 -4.844 -6.742 1.286 13 A_U15:A21_B A 15 ? B 21 ? 20 1 1 A G 16 1_555 B C 1 1_555 -0.364 -0.032 0.023 -3.930 -13.343 1.806 14 A_G16:C20_B A 16 ? B 20 ? 19 1 1 C G 1 1_555 D C 15 1_555 -0.225 -0.288 -0.262 2.219 -14.029 0.889 15 C_G1:C34_D C 1 ? D 34 ? 19 1 1 C G 2 1_555 D C 14 1_555 -0.604 -0.131 0.025 -9.068 -16.059 4.234 16 C_G2:C33_D C 2 ? D 33 ? 19 1 1 C U 3 1_555 D A 13 1_555 -0.481 0.097 -0.199 -2.660 -11.869 -0.638 17 C_U3:A32_D C 3 ? D 32 ? 20 1 1 C G 4 1_555 D C 12 1_555 0.038 -0.121 -0.151 -5.510 -10.582 -1.573 18 C_G4:C31_D C 4 ? D 31 ? 19 1 1 C G 5 1_555 D C 11 1_555 -0.257 -0.109 -0.198 -10.746 -16.382 -0.296 19 C_G5:C30_D C 5 ? D 30 ? 19 1 1 C U 6 1_555 D A 10 1_555 0.032 -0.085 -0.268 -8.713 -19.180 1.290 20 C_U6:A29_D C 6 ? D 29 ? 20 1 1 C G 7 1_555 D C 9 1_555 0.019 -0.120 0.236 4.769 -4.342 -4.935 21 C_G7:C28_D C 7 ? D 28 ? 19 1 1 C G 10 1_555 D C 7 1_555 -0.504 -0.146 -0.054 -1.220 -13.326 5.769 22 C_G10:C26_D C 10 ? D 26 ? 19 1 1 C C 12 1_555 D G 5 1_555 0.311 -0.069 -0.265 7.846 -9.662 5.303 23 C_C12:G24_D C 12 ? D 24 ? 19 1 1 C G 13 1_555 D C 4 1_555 0.013 -0.191 -0.232 -3.362 -9.018 -2.684 24 C_G13:C23_D C 13 ? D 23 ? 19 1 1 C C 14 1_555 D G 3 1_555 0.091 0.005 0.123 4.948 -17.351 1.399 25 C_C14:G22_D C 14 ? D 22 ? 19 1 1 C U 15 1_555 D A 2 1_555 0.365 -0.020 0.098 -2.308 -11.942 -0.020 26 C_U15:A21_D C 15 ? D 21 ? 20 1 1 C G 16 1_555 D C 1 1_555 0.497 0.018 0.105 -8.005 -14.253 5.504 27 C_G16:C20_D C 16 ? D 20 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 15 1_555 A G 2 1_555 B C 14 1_555 0.410 -2.067 3.121 1.360 10.687 30.777 -5.279 -0.528 2.309 19.405 -2.469 32.565 1 AA_G1G2:C33C34_BB A 1 ? B 34 ? A 2 ? B 33 ? 1 A G 2 1_555 B C 14 1_555 A U 3 1_555 B A 13 1_555 -0.535 -1.414 3.219 -3.088 4.293 31.590 -3.310 0.432 3.043 7.816 5.622 32.018 2 AA_G2U3:A32C33_BB A 2 ? B 33 ? A 3 ? B 32 ? 1 A U 3 1_555 B A 13 1_555 A G 4 1_555 B C 12 1_555 0.252 -1.359 3.181 1.192 8.557 33.114 -3.559 -0.255 2.761 14.704 -2.049 34.192 3 AA_U3G4:C31A32_BB A 3 ? B 32 ? A 4 ? B 31 ? 1 A G 4 1_555 B C 12 1_555 A G 5 1_555 B C 11 1_555 0.181 -1.667 3.084 -2.718 9.286 31.049 -4.395 -0.737 2.471 16.841 4.929 32.486 4 AA_G4G5:C30C31_BB A 4 ? B 31 ? A 5 ? B 30 ? 1 A G 5 1_555 B C 11 1_555 A U 6 1_555 B A 10 1_555 0.630 -1.212 3.352 6.297 7.596 34.830 -3.029 -0.124 3.092 12.385 -10.267 36.159 5 AA_G5U6:A29C30_BB A 5 ? B 30 ? A 6 ? B 29 ? 1 A U 6 1_555 B A 10 1_555 A G 7 1_555 B C 9 1_555 -0.060 -1.691 3.134 -2.493 12.073 30.025 -4.867 -0.271 2.299 22.165 4.576 32.403 6 AA_U6G7:C28A29_BB A 6 ? B 29 ? A 7 ? B 28 ? 1 A G 7 1_555 B C 9 1_555 A A 8 1_555 B A 8 1_555 -0.242 -0.703 3.162 1.361 3.476 40.052 -1.399 0.499 3.084 5.062 -1.982 40.218 7 AA_G7A8:A27C28_BB A 7 ? B 28 ? A 8 ? B 27 ? 1 A A 8 1_555 B A 8 1_555 A G 10 1_555 B C 7 1_555 -2.173 -2.153 3.051 -0.726 11.644 32.779 -5.088 3.547 2.226 19.866 1.239 34.740 8 AA_A8G10:C26A27_BB A 8 ? B 27 ? A 10 ? B 26 ? 1 A G 10 1_555 B C 7 1_555 A C 12 1_555 B G 5 1_555 0.645 -2.256 5.705 6.357 22.130 65.897 -3.325 -0.181 4.867 19.732 -5.669 69.373 9 AA_G10C12:G24C26_BB A 10 ? B 26 ? A 12 ? B 24 ? 1 A C 12 1_555 B G 5 1_555 A G 13 1_555 B C 4 1_555 -1.081 -1.569 3.659 -7.536 8.613 30.337 -4.479 0.482 3.272 15.771 13.798 32.376 10 AA_C12G13:C23G24_BB A 12 ? B 24 ? A 13 ? B 23 ? 1 A G 13 1_555 B C 4 1_555 A C 14 1_555 B G 3 1_555 -0.365 -1.331 3.231 -2.257 3.732 34.604 -2.771 0.276 3.092 6.243 3.776 34.870 11 AA_G13C14:G22C23_BB A 13 ? B 23 ? A 14 ? B 22 ? 1 A C 14 1_555 B G 3 1_555 A U 15 1_555 B A 2 1_555 0.220 -1.283 3.237 -0.311 8.840 32.214 -3.611 -0.432 2.794 15.568 0.548 33.376 12 AA_C14U15:A21G22_BB A 14 ? B 22 ? A 15 ? B 21 ? 1 A U 15 1_555 B A 2 1_555 A G 16 1_555 B C 1 1_555 0.518 -1.488 3.078 3.370 10.282 28.063 -4.715 -0.395 2.437 20.276 -6.646 30.038 13 AA_U15G16:C20A21_BB A 15 ? B 21 ? A 16 ? B 20 ? 1 C G 1 1_555 D C 15 1_555 C G 2 1_555 D C 14 1_555 0.564 -1.987 3.376 -3.228 10.133 32.708 -4.850 -1.428 2.597 17.429 5.551 34.348 14 CC_G1G2:C33C34_DD C 1 ? D 34 ? C 2 ? D 33 ? 1 C G 2 1_555 D C 14 1_555 C U 3 1_555 D A 13 1_555 -0.782 -1.641 3.044 0.844 3.632 30.300 -3.766 1.637 2.810 6.916 -1.607 30.524 15 CC_G2U3:A32C33_DD C 2 ? D 33 ? C 3 ? D 32 ? 1 C U 3 1_555 D A 13 1_555 C G 4 1_555 D C 12 1_555 0.272 -1.329 3.316 -0.027 11.862 33.746 -3.794 -0.448 2.710 19.693 0.045 35.713 16 CC_U3G4:C31A32_DD C 3 ? D 32 ? C 4 ? D 31 ? 1 C G 4 1_555 D C 12 1_555 C G 5 1_555 D C 11 1_555 0.590 -1.874 3.372 1.443 9.780 29.886 -5.193 -0.833 2.666 18.343 -2.706 31.443 17 CC_G4G5:C30C31_DD C 4 ? D 31 ? C 5 ? D 30 ? 1 C G 5 1_555 D C 11 1_555 C U 6 1_555 D A 10 1_555 -0.062 -1.298 3.193 2.258 7.962 32.724 -3.441 0.449 2.798 13.856 -3.930 33.727 18 CC_G5U6:A29C30_DD C 5 ? D 30 ? C 6 ? D 29 ? 1 C U 6 1_555 D A 10 1_555 C G 7 1_555 D C 9 1_555 0.186 -1.334 2.906 -2.527 15.175 27.462 -4.708 -0.718 1.902 29.237 4.868 31.404 19 CC_U6G7:C28A29_DD C 6 ? D 29 ? C 7 ? D 28 ? 1 C G 7 1_555 D C 9 1_555 C G 10 1_555 D C 7 1_555 -2.150 -2.458 6.302 -7.439 11.766 84.678 -2.321 1.258 6.124 8.684 5.490 85.601 20 CC_G7G10:C26C28_DD C 7 ? D 28 ? C 10 ? D 26 ? 1 C G 10 1_555 D C 7 1_555 C C 12 1_555 D G 5 1_555 0.279 -2.468 6.145 5.861 15.917 69.557 -3.105 0.124 5.550 13.747 -5.062 71.341 21 CC_G10C12:G24C26_DD C 10 ? D 26 ? C 12 ? D 24 ? 1 C C 12 1_555 D G 5 1_555 C G 13 1_555 D C 4 1_555 -0.853 -1.683 3.530 -1.889 11.948 27.402 -5.701 1.267 2.634 23.805 3.763 29.906 22 CC_C12G13:C23G24_DD C 12 ? D 24 ? C 13 ? D 23 ? 1 C G 13 1_555 D C 4 1_555 C C 14 1_555 D G 3 1_555 0.171 -1.623 3.017 -0.691 3.953 32.731 -3.460 -0.406 2.803 6.982 1.221 32.969 23 CC_G13C14:G22C23_DD C 13 ? D 23 ? C 14 ? D 22 ? 1 C C 14 1_555 D G 3 1_555 C U 15 1_555 D A 2 1_555 0.085 -1.533 3.387 2.096 7.460 32.882 -3.832 0.188 2.978 12.955 -3.641 33.758 24 CC_C14U15:A21G22_DD C 14 ? D 22 ? C 15 ? D 21 ? 1 C U 15 1_555 D A 2 1_555 C G 16 1_555 D C 1 1_555 0.633 -1.397 3.238 1.687 10.400 36.406 -3.407 -0.773 2.775 16.232 -2.633 37.850 25 CC_U15G16:C20A21_DD C 15 ? D 21 ? C 16 ? D 20 ? # _atom_sites.entry_id 5T3K _atom_sites.fract_transf_matrix[1][1] 0.031693 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002295 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011500 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030789 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P SE # loop_