HEADER TRANSFERASE 26-AUG-16 5T3O TITLE CRYSTAL STRUCTURE OF THE PHOSPHORYBOSYLPYROPHOSPHATE SYNTHETASE II TITLE 2 FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-PHOSPHATE PYROPHOSPHOKINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: RPPK,5-PHOSPHO-D-RIBOSYL ALPHA-1-DIPHOSPHATE,PHOSPHORIBOSYL COMPND 5 DIPHOSPHATE SYNTHASE,PHOSPHORIBOSYL PYROPHOSPHATE SYNTHASE; COMPND 6 EC: 2.7.6.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: PRS, TTHA1637; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, MODPIPE MODEL OF UP Q5SHU3 EXPDTA X-RAY DIFFRACTION AUTHOR V.I.TIMOFEEV,E.V.SINITSYNA,Y.A.ABRAMCHIK,M.A.KOSTROMINA,R.S.ESIPOV, AUTHOR 2 I.P.KURANOVA REVDAT 3 17-JAN-24 5T3O 1 REMARK REVDAT 2 21-JUN-17 5T3O 1 JRNL REVDAT 1 14-JUN-17 5T3O 0 JRNL AUTH V.I.TIMOFEEV,E.V.SINITSYNA,M.A.KOSTROMINA,T.I.MURAVIEVA, JRNL AUTH 2 D.A.MAKAROV,O.O.MIKHEEVA,I.P.KURANOVA,R.S.ESIPOV JRNL TITL CRYSTAL STRUCTURE OF RECOMBINANT PHOSPHORIBOSYLPYROPHOSPHATE JRNL TITL 2 SYNTHETASE 2 FROM THERMUS THERMOPHILUS HB27 COMPLEXED WITH JRNL TITL 3 ADP AND SULFATE IONS. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 73 369 2017 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 28580926 JRNL DOI 10.1107/S2053230X17007488 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 69040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3548 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5020 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 250 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6993 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.218 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.210 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7233 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7086 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9855 ; 1.453 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16272 ; 1.001 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 918 ; 6.836 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;36.259 ;23.085 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1182 ;17.682 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;16.232 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1176 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8010 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1539 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3681 ; 1.842 ; 4.643 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3680 ; 1.841 ; 4.642 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4596 ; 3.157 ; 6.954 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4597 ; 3.157 ; 6.955 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3551 ; 1.800 ; 4.817 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3528 ; 1.796 ; 4.823 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5224 ; 3.132 ; 7.148 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7739 ; 5.618 ;35.358 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7697 ; 5.605 ;35.392 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5T3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72677 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 77.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.43 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1075 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.55 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1DKR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M SA, LIQUID DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.99500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.98500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.98500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.99750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.98500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.98500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.99250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.98500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.98500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.99750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.98500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.98500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 155.99250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.99500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -314.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG C 111 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG C 111 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG C 124 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG C 124 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 60.97 -163.42 REMARK 500 SER A 82 37.42 72.47 REMARK 500 THR A 129 78.51 45.79 REMARK 500 ARG A 159 46.75 -154.05 REMARK 500 VAL A 160 -65.86 -135.38 REMARK 500 ASP A 161 67.19 63.18 REMARK 500 ASP A 193 101.92 -166.45 REMARK 500 SER A 198 40.85 -92.34 REMARK 500 THR A 200 -149.89 45.20 REMARK 500 GLU A 201 -135.06 -94.58 REMARK 500 ARG A 203 13.76 -157.58 REMARK 500 VAL A 204 108.16 38.53 REMARK 500 SER A 224 -81.40 -97.33 REMARK 500 GLN A 238 -40.21 -157.53 REMARK 500 ALA A 241 113.94 73.02 REMARK 500 TYR A 253 78.59 57.19 REMARK 500 ASP A 273 33.07 -97.70 REMARK 500 ASN B 13 63.60 -152.23 REMARK 500 ASN B 164 61.62 -119.34 REMARK 500 GLU B 212 -75.91 54.44 REMARK 500 SER B 224 -80.56 -104.90 REMARK 500 TYR B 253 73.62 51.11 REMARK 500 ASN C 13 62.50 -156.33 REMARK 500 GLU C 51 17.97 58.99 REMARK 500 THR C 129 67.00 37.83 REMARK 500 ASP C 161 100.31 94.09 REMARK 500 GLU C 195 -61.94 -160.30 REMARK 500 VAL C 197 85.53 -15.38 REMARK 500 SER C 198 59.70 -95.60 REMARK 500 ASP C 199 -51.57 -177.14 REMARK 500 THR C 200 -176.56 -68.39 REMARK 500 SER C 224 -73.44 -106.04 REMARK 500 TYR C 253 73.77 51.74 REMARK 500 PRO C 256 30.64 -93.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 403 DBREF 5T3O A 4 310 UNP Q5SHU3 Q5SHU3_THET8 4 310 DBREF 5T3O B 4 310 UNP Q5SHU3 Q5SHU3_THET8 4 310 DBREF 5T3O C 4 310 UNP Q5SHU3 Q5SHU3_THET8 4 310 SEQRES 1 A 307 PRO LEU LEU ILE PHE SER GLY GLN SER ASN ARG PRO LEU SEQRES 2 A 307 ALA GLN ALA ILE ALA GLU ALA LEU GLY LEU PRO LEU GLY SEQRES 3 A 307 LYS SER THR THR LEU ARG PHE ALA ASN ASP ASN LEU PHE SEQRES 4 A 307 VAL ARG TYR GLU GLU SER LEU ARG GLU GLY ASP VAL PHE SEQRES 5 A 307 ILE VAL GLN SER PHE VAL PRO PRO VAL GLN ASP HIS LEU SEQRES 6 A 307 MET GLU LEU LEU MET MET VAL ASP ALA ALA LYS GLY ALA SEQRES 7 A 307 SER ALA ALA ARG VAL THR ALA VAL ILE PRO TYR PHE SER SEQRES 8 A 307 TYR ALA ARG SER ASP LYS LYS ASP ALA PRO ARG ILE SER SEQRES 9 A 307 ILE THR ALA ARG LEU ILE ALA ASP LEU LEU GLN THR ALA SEQRES 10 A 307 GLY ALA ASP ARG VAL LEU THR MET THR LEU HIS SER PRO SEQRES 11 A 307 GLN VAL HIS GLY PHE PHE LYS ILE PRO VAL ASP HIS LEU SEQRES 12 A 307 SER ALA GLU PRO VAL ILE ALA ASN TYR PHE ALA THR ARG SEQRES 13 A 307 VAL ASP LEU GLU ASN ALA VAL VAL VAL ALA PRO ASP ALA SEQRES 14 A 307 GLY ASP LEU LYS ARG ALA SER ALA LEU ALA ARG ARG LEU SEQRES 15 A 307 GLY LEU PRO LEU ALA PHE ILE ASP LYS GLU ARG VAL SER SEQRES 16 A 307 ASP THR GLU VAL ARG VAL ARG MET LEU VAL GLY GLU VAL SEQRES 17 A 307 GLU GLY LYS THR ALA LEU ILE VAL ASP ASP GLU ILE SER SEQRES 18 A 307 THR ALA GLY SER LEU VAL GLU ALA VAL GLU ALA LEU MET SEQRES 19 A 307 GLN ALA GLY ALA LYS GLU VAL TYR ALA ALA ALA THR HIS SEQRES 20 A 307 GLY VAL TYR VAL GLY PRO ALA LEU ASP ARG ILE ALA LYS SEQRES 21 A 307 SER PRO VAL LYS GLU VAL ALA ALA THR ASP THR CYS PRO SEQRES 22 A 307 PRO LYS GLU GLY PRO LYS LEU ARG THR LEU THR VAL ALA SEQRES 23 A 307 PRO LEU PHE ALA GLU ALA ILE TRP ARG ILE HIS ARG GLY SEQRES 24 A 307 GLU SER VAL SER SER LEU PHE THR SEQRES 1 B 307 PRO LEU LEU ILE PHE SER GLY GLN SER ASN ARG PRO LEU SEQRES 2 B 307 ALA GLN ALA ILE ALA GLU ALA LEU GLY LEU PRO LEU GLY SEQRES 3 B 307 LYS SER THR THR LEU ARG PHE ALA ASN ASP ASN LEU PHE SEQRES 4 B 307 VAL ARG TYR GLU GLU SER LEU ARG GLU GLY ASP VAL PHE SEQRES 5 B 307 ILE VAL GLN SER PHE VAL PRO PRO VAL GLN ASP HIS LEU SEQRES 6 B 307 MET GLU LEU LEU MET MET VAL ASP ALA ALA LYS GLY ALA SEQRES 7 B 307 SER ALA ALA ARG VAL THR ALA VAL ILE PRO TYR PHE SER SEQRES 8 B 307 TYR ALA ARG SER ASP LYS LYS ASP ALA PRO ARG ILE SER SEQRES 9 B 307 ILE THR ALA ARG LEU ILE ALA ASP LEU LEU GLN THR ALA SEQRES 10 B 307 GLY ALA ASP ARG VAL LEU THR MET THR LEU HIS SER PRO SEQRES 11 B 307 GLN VAL HIS GLY PHE PHE LYS ILE PRO VAL ASP HIS LEU SEQRES 12 B 307 SER ALA GLU PRO VAL ILE ALA ASN TYR PHE ALA THR ARG SEQRES 13 B 307 VAL ASP LEU GLU ASN ALA VAL VAL VAL ALA PRO ASP ALA SEQRES 14 B 307 GLY ASP LEU LYS ARG ALA SER ALA LEU ALA ARG ARG LEU SEQRES 15 B 307 GLY LEU PRO LEU ALA PHE ILE ASP LYS GLU ARG VAL SER SEQRES 16 B 307 ASP THR GLU VAL ARG VAL ARG MET LEU VAL GLY GLU VAL SEQRES 17 B 307 GLU GLY LYS THR ALA LEU ILE VAL ASP ASP GLU ILE SER SEQRES 18 B 307 THR ALA GLY SER LEU VAL GLU ALA VAL GLU ALA LEU MET SEQRES 19 B 307 GLN ALA GLY ALA LYS GLU VAL TYR ALA ALA ALA THR HIS SEQRES 20 B 307 GLY VAL TYR VAL GLY PRO ALA LEU ASP ARG ILE ALA LYS SEQRES 21 B 307 SER PRO VAL LYS GLU VAL ALA ALA THR ASP THR CYS PRO SEQRES 22 B 307 PRO LYS GLU GLY PRO LYS LEU ARG THR LEU THR VAL ALA SEQRES 23 B 307 PRO LEU PHE ALA GLU ALA ILE TRP ARG ILE HIS ARG GLY SEQRES 24 B 307 GLU SER VAL SER SER LEU PHE THR SEQRES 1 C 307 PRO LEU LEU ILE PHE SER GLY GLN SER ASN ARG PRO LEU SEQRES 2 C 307 ALA GLN ALA ILE ALA GLU ALA LEU GLY LEU PRO LEU GLY SEQRES 3 C 307 LYS SER THR THR LEU ARG PHE ALA ASN ASP ASN LEU PHE SEQRES 4 C 307 VAL ARG TYR GLU GLU SER LEU ARG GLU GLY ASP VAL PHE SEQRES 5 C 307 ILE VAL GLN SER PHE VAL PRO PRO VAL GLN ASP HIS LEU SEQRES 6 C 307 MET GLU LEU LEU MET MET VAL ASP ALA ALA LYS GLY ALA SEQRES 7 C 307 SER ALA ALA ARG VAL THR ALA VAL ILE PRO TYR PHE SER SEQRES 8 C 307 TYR ALA ARG SER ASP LYS LYS ASP ALA PRO ARG ILE SER SEQRES 9 C 307 ILE THR ALA ARG LEU ILE ALA ASP LEU LEU GLN THR ALA SEQRES 10 C 307 GLY ALA ASP ARG VAL LEU THR MET THR LEU HIS SER PRO SEQRES 11 C 307 GLN VAL HIS GLY PHE PHE LYS ILE PRO VAL ASP HIS LEU SEQRES 12 C 307 SER ALA GLU PRO VAL ILE ALA ASN TYR PHE ALA THR ARG SEQRES 13 C 307 VAL ASP LEU GLU ASN ALA VAL VAL VAL ALA PRO ASP ALA SEQRES 14 C 307 GLY ASP LEU LYS ARG ALA SER ALA LEU ALA ARG ARG LEU SEQRES 15 C 307 GLY LEU PRO LEU ALA PHE ILE ASP LYS GLU ARG VAL SER SEQRES 16 C 307 ASP THR GLU VAL ARG VAL ARG MET LEU VAL GLY GLU VAL SEQRES 17 C 307 GLU GLY LYS THR ALA LEU ILE VAL ASP ASP GLU ILE SER SEQRES 18 C 307 THR ALA GLY SER LEU VAL GLU ALA VAL GLU ALA LEU MET SEQRES 19 C 307 GLN ALA GLY ALA LYS GLU VAL TYR ALA ALA ALA THR HIS SEQRES 20 C 307 GLY VAL TYR VAL GLY PRO ALA LEU ASP ARG ILE ALA LYS SEQRES 21 C 307 SER PRO VAL LYS GLU VAL ALA ALA THR ASP THR CYS PRO SEQRES 22 C 307 PRO LYS GLU GLY PRO LYS LEU ARG THR LEU THR VAL ALA SEQRES 23 C 307 PRO LEU PHE ALA GLU ALA ILE TRP ARG ILE HIS ARG GLY SEQRES 24 C 307 GLU SER VAL SER SER LEU PHE THR HET ADP A 401 27 HET SO4 A 402 5 HET SO4 A 403 5 HET ADP B 401 27 HET SO4 B 402 5 HET SO4 B 403 5 HET ADP C 401 27 HET SO4 C 402 5 HET SO4 C 403 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 4 ADP 3(C10 H15 N5 O10 P2) FORMUL 5 SO4 6(O4 S 2-) FORMUL 13 HOH *190(H2 O) HELIX 1 AA1 ASN A 13 ALA A 23 1 11 HELIX 2 AA2 PRO A 63 ALA A 81 1 19 HELIX 3 AA3 PHE A 93 SER A 98 5 6 HELIX 4 AA4 ILE A 108 GLY A 121 1 14 HELIX 5 AA5 SER A 132 PHE A 139 5 8 HELIX 6 AA6 ALA A 148 VAL A 160 1 13 HELIX 7 AA7 ASP A 174 SER A 179 1 6 HELIX 8 AA8 ALA A 180 LEU A 185 1 6 HELIX 9 AA9 ALA A 226 MET A 237 1 12 HELIX 10 AB1 PRO A 256 SER A 264 1 9 HELIX 11 AB2 VAL A 288 GLY A 302 1 15 HELIX 12 AB3 VAL A 305 PHE A 309 5 5 HELIX 13 AB4 ASN B 13 LEU B 24 1 12 HELIX 14 AB5 PRO B 63 ALA B 81 1 19 HELIX 15 AB6 PHE B 93 SER B 98 5 6 HELIX 16 AB7 ILE B 108 GLY B 121 1 14 HELIX 17 AB8 GLN B 134 PHE B 139 5 6 HELIX 18 AB9 ALA B 148 VAL B 160 1 13 HELIX 19 AC1 ASP B 171 GLY B 173 5 3 HELIX 20 AC2 ASP B 174 GLY B 186 1 13 HELIX 21 AC3 ALA B 226 GLN B 238 1 13 HELIX 22 AC4 PRO B 256 SER B 264 1 9 HELIX 23 AC5 VAL B 288 GLY B 302 1 15 HELIX 24 AC6 VAL B 305 THR B 310 5 6 HELIX 25 AC7 ASN C 13 LEU C 24 1 12 HELIX 26 AC8 PRO C 63 ALA C 81 1 19 HELIX 27 AC9 PHE C 93 SER C 98 5 6 HELIX 28 AD1 ILE C 108 GLY C 121 1 14 HELIX 29 AD2 SER C 132 PHE C 139 5 8 HELIX 30 AD3 ALA C 148 VAL C 160 1 13 HELIX 31 AD4 ASP C 174 GLY C 186 1 13 HELIX 32 AD5 ALA C 226 ALA C 239 1 14 HELIX 33 AD6 PRO C 256 SER C 264 1 9 HELIX 34 AD7 VAL C 288 GLY C 302 1 15 HELIX 35 AD8 VAL C 305 PHE C 309 5 5 SHEET 1 AA1 5 LEU A 5 SER A 9 0 SHEET 2 AA1 5 ASP A 53 VAL A 57 1 O VAL A 57 N PHE A 8 SHEET 3 AA1 5 ARG A 85 ILE A 90 1 O VAL A 89 N ILE A 56 SHEET 4 AA1 5 ARG A 124 MET A 128 1 O ARG A 124 N ALA A 88 SHEET 5 AA1 5 VAL A 143 LEU A 146 1 O LEU A 146 N THR A 127 SHEET 1 AA2 2 SER A 31 ARG A 35 0 SHEET 2 AA2 2 LEU A 41 TYR A 45 -1 O PHE A 42 N LEU A 34 SHEET 1 AA3 7 LEU A 207 VAL A 208 0 SHEET 2 AA3 7 LEU A 189 ILE A 192 -1 N PHE A 191 O VAL A 208 SHEET 3 AA3 7 ALA A 165 ALA A 169 1 N ALA A 169 O ALA A 190 SHEET 4 AA3 7 THR A 215 ILE A 223 1 O LEU A 217 N VAL A 168 SHEET 5 AA3 7 VAL A 244 GLY A 251 1 O TYR A 245 N ALA A 216 SHEET 6 AA3 7 VAL A 269 THR A 272 1 O ALA A 270 N ALA A 248 SHEET 7 AA3 7 LEU A 283 LEU A 286 1 O LEU A 286 N ALA A 271 SHEET 1 AA4 5 LEU B 5 SER B 9 0 SHEET 2 AA4 5 ASP B 53 VAL B 57 1 O PHE B 55 N LEU B 6 SHEET 3 AA4 5 ARG B 85 ILE B 90 1 O ARG B 85 N VAL B 54 SHEET 4 AA4 5 ARG B 124 MET B 128 1 O LEU B 126 N ILE B 90 SHEET 5 AA4 5 VAL B 143 LEU B 146 1 O LEU B 146 N THR B 127 SHEET 1 AA5 2 SER B 31 ARG B 35 0 SHEET 2 AA5 2 LEU B 41 TYR B 45 -1 O ARG B 44 N THR B 32 SHEET 1 AA6 7 VAL B 202 VAL B 208 0 SHEET 2 AA6 7 LEU B 189 ARG B 196 -1 N ASP B 193 O ARG B 205 SHEET 3 AA6 7 ALA B 165 ALA B 169 1 N ALA B 169 O ILE B 192 SHEET 4 AA6 7 THR B 215 ILE B 223 1 O LEU B 217 N VAL B 166 SHEET 5 AA6 7 GLU B 243 GLY B 251 1 O GLU B 243 N ALA B 216 SHEET 6 AA6 7 GLU B 268 THR B 272 1 O GLU B 268 N ALA B 246 SHEET 7 AA6 7 LEU B 283 LEU B 286 1 O ARG B 284 N VAL B 269 SHEET 1 AA7 5 LEU C 5 SER C 9 0 SHEET 2 AA7 5 ASP C 53 VAL C 57 1 O VAL C 57 N PHE C 8 SHEET 3 AA7 5 ARG C 85 ILE C 90 1 O VAL C 89 N ILE C 56 SHEET 4 AA7 5 ARG C 124 MET C 128 1 O ARG C 124 N ALA C 88 SHEET 5 AA7 5 VAL C 143 LEU C 146 1 O LEU C 146 N THR C 127 SHEET 1 AA8 2 SER C 31 ARG C 35 0 SHEET 2 AA8 2 LEU C 41 TYR C 45 -1 O ARG C 44 N THR C 32 SHEET 1 AA9 7 LEU C 207 VAL C 208 0 SHEET 2 AA9 7 LEU C 189 ILE C 192 -1 N PHE C 191 O VAL C 208 SHEET 3 AA9 7 ALA C 165 ALA C 169 1 N VAL C 167 O ALA C 190 SHEET 4 AA9 7 THR C 215 ILE C 223 1 O LEU C 217 N VAL C 168 SHEET 5 AA9 7 GLU C 243 GLY C 251 1 O GLU C 243 N ALA C 216 SHEET 6 AA9 7 GLU C 268 THR C 272 1 O GLU C 268 N ALA C 246 SHEET 7 AA9 7 LEU C 283 LEU C 286 1 O LEU C 286 N ALA C 271 CISPEP 1 PRO A 62 PRO A 63 0 -3.89 CISPEP 2 LEU A 181 ALA A 182 0 13.92 CISPEP 3 ALA A 182 ARG A 183 0 25.89 CISPEP 4 GLU A 195 ARG A 196 0 10.75 CISPEP 5 VAL A 202 ARG A 203 0 -16.69 CISPEP 6 PRO B 62 PRO B 63 0 -7.23 CISPEP 7 PRO C 62 PRO C 63 0 -5.70 CISPEP 8 GLU C 195 ARG C 196 0 -12.65 SITE 1 AC1 11 SER A 94 ARG A 97 SER A 98 LYS A 100 SITE 2 AC1 11 ASP A 102 HIS A 131 ASP A 171 ARG A 196 SITE 3 AC1 11 PHE C 36 ASN C 38 ASN C 40 SITE 1 AC2 7 ARG A 105 SER A 304 VAL A 305 SER A 306 SITE 2 AC2 7 SER C 48 ARG C 50 HOH C 519 SITE 1 AC3 5 SER A 224 THR A 225 ALA A 226 GLY A 227 SITE 2 AC3 5 SER A 228 SITE 1 AC4 12 PHE B 36 ASN B 38 ASN B 40 ARG B 97 SITE 2 AC4 12 SER B 98 LYS B 100 ASP B 102 HIS B 131 SITE 3 AC4 12 ASP B 171 ARG B 196 HOH B 552 HOH B 585 SITE 1 AC5 8 SER A 48 ARG A 50 SER B 304 VAL B 305 SITE 2 AC5 8 SER B 306 HOH B 529 HOH B 575 ARG C 105 SITE 1 AC6 9 ARG B 196 SER B 224 THR B 225 ALA B 226 SITE 2 AC6 9 GLY B 227 SER B 228 HOH B 515 HOH B 556 SITE 3 AC6 9 HOH B 567 SITE 1 AC7 8 PHE A 36 ASN A 38 ASN A 40 ARG C 97 SITE 2 AC7 8 SER C 98 LYS C 100 ASP C 102 HIS C 131 SITE 1 AC8 8 SER B 48 ARG B 50 ARG B 105 HOH B 524 SITE 2 AC8 8 SER C 304 VAL C 305 SER C 306 HOH C 540 SITE 1 AC9 7 SER C 224 THR C 225 ALA C 226 GLY C 227 SITE 2 AC9 7 SER C 228 HOH C 520 HOH C 529 CRYST1 115.970 115.970 207.990 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008623 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004808 0.00000