HEADER HYDROLASE 26-AUG-16 5T3V TITLE A NOVEL DOMAIN IN HUMAN EXOG CONVERTS APOPTOTIC ENDONUCLEASE TO DNA- TITLE 2 REPAIR ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE EXOG, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 59-368; COMPND 5 SYNONYM: ENDONUCLEASE G-LIKE 1,ENDO G-LIKE 1; COMPND 6 EC: 3.1.30.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EXOG, ENDOGL1, ENDOGL2, ENGL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MITOCHONDRIA, EXONUCLEASE, DNA-REPAIR, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.R.SZYMANSKI,W.Y.YIN REVDAT 4 04-OCT-23 5T3V 1 LINK REVDAT 3 25-DEC-19 5T3V 1 REMARK REVDAT 2 27-SEP-17 5T3V 1 REMARK REVDAT 1 17-MAY-17 5T3V 0 JRNL AUTH M.R.SZYMANSKI,W.YU,A.M.GMYREK,M.A.WHITE,I.J.MOLINEUX, JRNL AUTH 2 J.C.LEE,Y.W.YIN JRNL TITL A DOMAIN IN HUMAN EXOG CONVERTS APOPTOTIC ENDONUCLEASE TO JRNL TITL 2 DNA-REPAIR EXONUCLEASE. JRNL REF NAT COMMUN V. 8 14959 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28466855 JRNL DOI 10.1038/NCOMMS14959 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 24211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7170 - 6.2623 0.98 1683 157 0.1873 0.2240 REMARK 3 2 6.2623 - 4.9720 0.98 1662 148 0.1511 0.1910 REMARK 3 3 4.9720 - 4.3440 0.97 1634 146 0.1215 0.1539 REMARK 3 4 4.3440 - 3.9470 0.97 1637 144 0.1362 0.1821 REMARK 3 5 3.9470 - 3.6642 0.97 1602 152 0.1505 0.1976 REMARK 3 6 3.6642 - 3.4482 0.96 1616 135 0.1744 0.2228 REMARK 3 7 3.4482 - 3.2755 0.96 1593 143 0.2043 0.2962 REMARK 3 8 3.2755 - 3.1330 0.95 1598 145 0.2066 0.2690 REMARK 3 9 3.1330 - 3.0124 0.95 1575 138 0.2142 0.2599 REMARK 3 10 3.0124 - 2.9084 0.94 1560 146 0.2221 0.2772 REMARK 3 11 2.9084 - 2.8175 0.93 1545 131 0.2485 0.2993 REMARK 3 12 2.8175 - 2.7370 0.92 1550 139 0.2558 0.3358 REMARK 3 13 2.7370 - 2.6649 0.91 1502 139 0.2417 0.3426 REMARK 3 14 2.6649 - 2.5999 0.88 1461 130 0.2507 0.3136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4941 REMARK 3 ANGLE : 0.483 6685 REMARK 3 CHIRALITY : 0.043 717 REMARK 3 PLANARITY : 0.003 869 REMARK 3 DIHEDRAL : 13.132 2993 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9391 28.2775 -10.8295 REMARK 3 T TENSOR REMARK 3 T11: 0.3580 T22: 0.2608 REMARK 3 T33: 0.3431 T12: -0.0049 REMARK 3 T13: 0.0360 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 5.9692 L22: 2.7624 REMARK 3 L33: 2.9859 L12: -0.4320 REMARK 3 L13: 2.0463 L23: 0.1609 REMARK 3 S TENSOR REMARK 3 S11: -0.2130 S12: 0.0245 S13: 0.2490 REMARK 3 S21: -0.2660 S22: 0.1605 S23: -0.0131 REMARK 3 S31: 0.0893 S32: -0.1971 S33: 0.0008 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9263 18.0906 -21.8648 REMARK 3 T TENSOR REMARK 3 T11: 0.4796 T22: 0.5402 REMARK 3 T33: 0.2626 T12: 0.0070 REMARK 3 T13: 0.0572 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 3.9765 L22: 8.6637 REMARK 3 L33: 6.5706 L12: -0.3870 REMARK 3 L13: 1.5213 L23: -0.2966 REMARK 3 S TENSOR REMARK 3 S11: 0.1570 S12: 0.8613 S13: -0.1717 REMARK 3 S21: -0.7666 S22: -0.2171 S23: -0.0589 REMARK 3 S31: 0.0994 S32: 0.0961 S33: 0.0020 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0926 17.4372 -10.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.3955 T22: 0.4334 REMARK 3 T33: 0.3569 T12: -0.0613 REMARK 3 T13: -0.0099 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.2167 L22: 2.6043 REMARK 3 L33: 1.9643 L12: -0.9704 REMARK 3 L13: 0.9196 L23: -0.6844 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.0142 S13: -0.0928 REMARK 3 S21: -0.2248 S22: 0.0792 S23: 0.2403 REMARK 3 S31: 0.0637 S32: -0.4306 S33: -0.0779 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8419 21.5194 0.8341 REMARK 3 T TENSOR REMARK 3 T11: 0.4177 T22: 0.6812 REMARK 3 T33: 0.4138 T12: 0.0135 REMARK 3 T13: 0.0337 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 5.0003 L22: 2.6133 REMARK 3 L33: 2.9873 L12: -0.3134 REMARK 3 L13: 0.9817 L23: -0.7044 REMARK 3 S TENSOR REMARK 3 S11: -0.1466 S12: -1.0160 S13: 0.0624 REMARK 3 S21: 0.2362 S22: 0.1165 S23: 0.2693 REMARK 3 S31: -0.0625 S32: -0.5598 S33: 0.0375 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.8944 10.3010 -29.3493 REMARK 3 T TENSOR REMARK 3 T11: 0.5906 T22: 0.6389 REMARK 3 T33: 0.5162 T12: -0.0537 REMARK 3 T13: -0.0588 T23: -0.0932 REMARK 3 L TENSOR REMARK 3 L11: 5.9948 L22: 0.5604 REMARK 3 L33: 7.6951 L12: -1.1413 REMARK 3 L13: 1.6058 L23: -0.9638 REMARK 3 S TENSOR REMARK 3 S11: 0.3319 S12: 0.4029 S13: -0.7494 REMARK 3 S21: -0.0976 S22: -0.2269 S23: 0.2246 REMARK 3 S31: 0.2437 S32: -0.7089 S33: -0.1161 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1195 28.2820 4.5224 REMARK 3 T TENSOR REMARK 3 T11: 0.4106 T22: 0.3926 REMARK 3 T33: 0.5078 T12: 0.0502 REMARK 3 T13: -0.0360 T23: -0.1216 REMARK 3 L TENSOR REMARK 3 L11: 3.6819 L22: 1.6701 REMARK 3 L33: 1.3414 L12: -0.5063 REMARK 3 L13: 0.6072 L23: -0.1347 REMARK 3 S TENSOR REMARK 3 S11: -0.2600 S12: -0.6257 S13: 0.6465 REMARK 3 S21: 0.2974 S22: 0.0868 S23: -0.1852 REMARK 3 S31: -0.1681 S32: -0.1532 S33: 0.1557 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5117 18.7683 16.6265 REMARK 3 T TENSOR REMARK 3 T11: 0.5042 T22: 0.6671 REMARK 3 T33: 0.3128 T12: 0.0722 REMARK 3 T13: 0.0209 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 4.5042 L22: 3.4742 REMARK 3 L33: 2.8485 L12: -0.8724 REMARK 3 L13: 0.6395 L23: -0.2700 REMARK 3 S TENSOR REMARK 3 S11: -0.0771 S12: -1.3618 S13: 0.0604 REMARK 3 S21: 0.5443 S22: 0.0459 S23: 0.0314 REMARK 3 S31: -0.1264 S32: -0.3019 S33: 0.0524 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5396 17.3158 0.6113 REMARK 3 T TENSOR REMARK 3 T11: 0.3573 T22: 0.3152 REMARK 3 T33: 0.3604 T12: 0.0406 REMARK 3 T13: -0.0103 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 4.4382 L22: 2.0906 REMARK 3 L33: 1.3314 L12: 0.1170 REMARK 3 L13: 0.4247 L23: -0.2140 REMARK 3 S TENSOR REMARK 3 S11: -0.0834 S12: -0.0146 S13: 0.1108 REMARK 3 S21: -0.0244 S22: 0.0301 S23: -0.2668 REMARK 3 S31: -0.0103 S32: 0.2189 S33: 0.0370 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 304 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5433 9.6381 17.0469 REMARK 3 T TENSOR REMARK 3 T11: 0.6420 T22: 0.5030 REMARK 3 T33: 0.5272 T12: 0.0687 REMARK 3 T13: -0.0833 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 5.3644 L22: 5.4182 REMARK 3 L33: 3.2739 L12: 1.1546 REMARK 3 L13: -0.3647 L23: 4.0170 REMARK 3 S TENSOR REMARK 3 S11: 0.2450 S12: 0.0889 S13: -0.2617 REMARK 3 S21: -0.2518 S22: -0.1741 S23: 0.0428 REMARK 3 S31: -0.7233 S32: -0.4147 S33: 0.0888 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 319 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0107 8.6648 27.3788 REMARK 3 T TENSOR REMARK 3 T11: 0.6614 T22: 0.6779 REMARK 3 T33: 0.5407 T12: 0.0328 REMARK 3 T13: -0.0792 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 3.3104 L22: 6.0159 REMARK 3 L33: 3.3917 L12: 0.3489 REMARK 3 L13: -0.0690 L23: 4.4966 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.3522 S13: -0.1118 REMARK 3 S21: 0.2826 S22: 0.0775 S23: -0.1061 REMARK 3 S31: 0.6507 S32: -0.4579 S33: -0.2599 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.89 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24211 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.708 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3ISM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M (NH4)2SO4, 0.1M MGCL2, 0.1M TRIS REMARK 280 -HCL PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.71800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 58 REMARK 465 LYS A 59 REMARK 465 GLN A 359 REMARK 465 SER A 360 REMARK 465 GLY A 361 REMARK 465 THR A 362 REMARK 465 GLN A 363 REMARK 465 ILE A 364 REMARK 465 ARG A 365 REMARK 465 LYS A 366 REMARK 465 PRO A 367 REMARK 465 SER A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 MET B 58 REMARK 465 GLN B 359 REMARK 465 SER B 360 REMARK 465 GLY B 361 REMARK 465 THR B 362 REMARK 465 GLN B 363 REMARK 465 ILE B 364 REMARK 465 ARG B 365 REMARK 465 LYS B 366 REMARK 465 PRO B 367 REMARK 465 SER B 368 REMARK 465 HIS B 369 REMARK 465 HIS B 370 REMARK 465 HIS B 371 REMARK 465 HIS B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 285 HG1 THR B 287 1.56 REMARK 500 OH TYR B 77 OD2 ASP B 117 2.18 REMARK 500 O HOH A 533 O HOH A 535 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 79 19.24 -144.44 REMARK 500 SER A 345 -71.71 -59.71 REMARK 500 LYS A 357 -144.43 -118.64 REMARK 500 ASN B 79 26.47 -140.59 REMARK 500 ASP B 297 -164.83 -115.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 541 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 171 OD1 REMARK 620 2 HOH A 505 O 74.4 REMARK 620 3 HOH A 506 O 147.5 85.1 REMARK 620 4 HOH A 507 O 108.8 99.8 99.2 REMARK 620 5 HOH A 510 O 68.0 80.7 84.2 176.5 REMARK 620 6 HOH A 522 O 97.0 155.0 91.1 105.2 74.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 171 OD1 REMARK 620 2 HOH B 508 O 75.2 REMARK 620 3 HOH B 511 O 161.6 88.3 REMARK 620 4 HOH B 512 O 98.1 167.7 99.5 REMARK 620 5 HOH B 518 O 85.2 97.8 89.2 91.9 REMARK 620 6 HOH B 536 O 103.3 79.1 81.0 92.6 169.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T40 RELATED DB: PDB REMARK 900 RELATED ID: 5T4I RELATED DB: PDB REMARK 900 RELATED ID: 5T5C RELATED DB: PDB DBREF 5T3V A 59 368 UNP Q9Y2C4 EXOG_HUMAN 59 368 DBREF 5T3V B 59 368 UNP Q9Y2C4 EXOG_HUMAN 59 368 SEQADV 5T3V MET A 58 UNP Q9Y2C4 INITIATING METHIONINE SEQADV 5T3V HIS A 369 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5T3V HIS A 370 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5T3V HIS A 371 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5T3V HIS A 372 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5T3V HIS A 373 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5T3V HIS A 374 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5T3V MET B 58 UNP Q9Y2C4 INITIATING METHIONINE SEQADV 5T3V HIS B 369 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5T3V HIS B 370 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5T3V HIS B 371 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5T3V HIS B 372 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5T3V HIS B 373 UNP Q9Y2C4 EXPRESSION TAG SEQADV 5T3V HIS B 374 UNP Q9Y2C4 EXPRESSION TAG SEQRES 1 A 317 MET LYS ALA VAL LEU GLU GLN PHE GLY PHE PRO LEU THR SEQRES 2 A 317 GLY THR GLU ALA ARG CYS TYR THR ASN HIS ALA LEU SER SEQRES 3 A 317 TYR ASP GLN ALA LYS ARG VAL PRO ARG TRP VAL LEU GLU SEQRES 4 A 317 HIS ILE SER LYS SER LYS ILE MET GLY ASP ALA ASP ARG SEQRES 5 A 317 LYS HIS CYS LYS PHE LYS PRO ASP PRO ASN ILE PRO PRO SEQRES 6 A 317 THR PHE SER ALA PHE ASN GLU ASP TYR VAL GLY SER GLY SEQRES 7 A 317 TRP SER ARG GLY HIS MET ALA PRO ALA GLY ASN ASN LYS SEQRES 8 A 317 PHE SER SER LYS ALA MET ALA GLU THR PHE TYR LEU SER SEQRES 9 A 317 ASN ILE VAL PRO GLN ASP PHE ASP ASN ASN SER GLY TYR SEQRES 10 A 317 TRP ASN ARG ILE GLU MET TYR CYS ARG GLU LEU THR GLU SEQRES 11 A 317 ARG PHE GLU ASP VAL TRP VAL VAL SER GLY PRO LEU THR SEQRES 12 A 317 LEU PRO GLN THR ARG GLY ASP GLY LYS LYS ILE VAL SER SEQRES 13 A 317 TYR GLN VAL ILE GLY GLU ASP ASN VAL ALA VAL PRO SER SEQRES 14 A 317 HIS LEU TYR LYS VAL ILE LEU ALA ARG ARG SER SER VAL SEQRES 15 A 317 SER THR GLU PRO LEU ALA LEU GLY ALA PHE VAL VAL PRO SEQRES 16 A 317 ASN GLU ALA ILE GLY PHE GLN PRO GLN LEU THR GLU PHE SEQRES 17 A 317 GLN VAL SER LEU GLN ASP LEU GLU LYS LEU SER GLY LEU SEQRES 18 A 317 VAL PHE PHE PRO HIS LEU ASP ARG THR SER ASP ILE ARG SEQRES 19 A 317 ASN ILE CYS SER VAL ASP THR CYS LYS LEU LEU ASP PHE SEQRES 20 A 317 GLN GLU PHE THR LEU TYR LEU SER THR ARG LYS ILE GLU SEQRES 21 A 317 GLY ALA ARG SER VAL LEU ARG LEU GLU LYS ILE MET GLU SEQRES 22 A 317 ASN LEU LYS ASN ALA GLU ILE GLU PRO ASP ASP TYR PHE SEQRES 23 A 317 MET SER ARG TYR GLU LYS LYS LEU GLU GLU LEU LYS ALA SEQRES 24 A 317 LYS GLU GLN SER GLY THR GLN ILE ARG LYS PRO SER HIS SEQRES 25 A 317 HIS HIS HIS HIS HIS SEQRES 1 B 317 MET LYS ALA VAL LEU GLU GLN PHE GLY PHE PRO LEU THR SEQRES 2 B 317 GLY THR GLU ALA ARG CYS TYR THR ASN HIS ALA LEU SER SEQRES 3 B 317 TYR ASP GLN ALA LYS ARG VAL PRO ARG TRP VAL LEU GLU SEQRES 4 B 317 HIS ILE SER LYS SER LYS ILE MET GLY ASP ALA ASP ARG SEQRES 5 B 317 LYS HIS CYS LYS PHE LYS PRO ASP PRO ASN ILE PRO PRO SEQRES 6 B 317 THR PHE SER ALA PHE ASN GLU ASP TYR VAL GLY SER GLY SEQRES 7 B 317 TRP SER ARG GLY HIS MET ALA PRO ALA GLY ASN ASN LYS SEQRES 8 B 317 PHE SER SER LYS ALA MET ALA GLU THR PHE TYR LEU SER SEQRES 9 B 317 ASN ILE VAL PRO GLN ASP PHE ASP ASN ASN SER GLY TYR SEQRES 10 B 317 TRP ASN ARG ILE GLU MET TYR CYS ARG GLU LEU THR GLU SEQRES 11 B 317 ARG PHE GLU ASP VAL TRP VAL VAL SER GLY PRO LEU THR SEQRES 12 B 317 LEU PRO GLN THR ARG GLY ASP GLY LYS LYS ILE VAL SER SEQRES 13 B 317 TYR GLN VAL ILE GLY GLU ASP ASN VAL ALA VAL PRO SER SEQRES 14 B 317 HIS LEU TYR LYS VAL ILE LEU ALA ARG ARG SER SER VAL SEQRES 15 B 317 SER THR GLU PRO LEU ALA LEU GLY ALA PHE VAL VAL PRO SEQRES 16 B 317 ASN GLU ALA ILE GLY PHE GLN PRO GLN LEU THR GLU PHE SEQRES 17 B 317 GLN VAL SER LEU GLN ASP LEU GLU LYS LEU SER GLY LEU SEQRES 18 B 317 VAL PHE PHE PRO HIS LEU ASP ARG THR SER ASP ILE ARG SEQRES 19 B 317 ASN ILE CYS SER VAL ASP THR CYS LYS LEU LEU ASP PHE SEQRES 20 B 317 GLN GLU PHE THR LEU TYR LEU SER THR ARG LYS ILE GLU SEQRES 21 B 317 GLY ALA ARG SER VAL LEU ARG LEU GLU LYS ILE MET GLU SEQRES 22 B 317 ASN LEU LYS ASN ALA GLU ILE GLU PRO ASP ASP TYR PHE SEQRES 23 B 317 MET SER ARG TYR GLU LYS LYS LEU GLU GLU LEU LYS ALA SEQRES 24 B 317 LYS GLU GLN SER GLY THR GLN ILE ARG LYS PRO SER HIS SEQRES 25 B 317 HIS HIS HIS HIS HIS HET MN A 401 1 HET SO4 A 402 5 HET MN B 401 1 HET SO4 B 402 5 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION FORMUL 3 MN 2(MN 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *81(H2 O) HELIX 1 AA1 VAL A 61 GLY A 66 5 6 HELIX 2 AA2 ASP A 108 CYS A 112 5 5 HELIX 3 AA3 PRO A 121 SER A 125 5 5 HELIX 4 AA4 PHE A 127 VAL A 132 1 6 HELIX 5 AA5 PRO A 143 ASN A 147 5 5 HELIX 6 AA6 SER A 150 PHE A 158 1 9 HELIX 7 AA7 TYR A 159 SER A 161 5 3 HELIX 8 AA8 ASP A 167 GLY A 173 1 7 HELIX 9 AA9 GLY A 173 THR A 186 1 14 HELIX 10 AB1 GLN A 261 GLU A 264 5 4 HELIX 11 AB2 SER A 268 GLY A 277 1 10 HELIX 12 AB3 ILE A 293 ASP A 297 1 5 HELIX 13 AB4 ASP A 303 GLU A 317 1 15 HELIX 14 AB5 SER A 321 ALA A 335 1 15 HELIX 15 AB6 ASP A 340 ALA A 356 1 17 HELIX 16 AB7 VAL B 61 GLY B 66 5 6 HELIX 17 AB8 ASP B 108 CYS B 112 5 5 HELIX 18 AB9 PRO B 121 SER B 125 5 5 HELIX 19 AC1 PHE B 127 VAL B 132 1 6 HELIX 20 AC2 PRO B 143 ASN B 147 5 5 HELIX 21 AC3 SER B 150 THR B 157 1 8 HELIX 22 AC4 PHE B 158 SER B 161 5 4 HELIX 23 AC5 ASP B 167 GLY B 173 1 7 HELIX 24 AC6 GLY B 173 LEU B 185 1 13 HELIX 25 AC7 THR B 186 ARG B 188 5 3 HELIX 26 AC8 GLN B 261 GLU B 264 5 4 HELIX 27 AC9 SER B 268 GLY B 277 1 10 HELIX 28 AD1 ILE B 293 ASP B 297 1 5 HELIX 29 AD2 ASP B 303 ALA B 319 1 17 HELIX 30 AD3 SER B 321 ALA B 335 1 15 HELIX 31 AD4 ASP B 340 ALA B 356 1 17 SHEET 1 AA1 7 ARG A 75 CYS A 76 0 SHEET 2 AA1 7 HIS A 80 ASP A 85 -1 O LEU A 82 N ARG A 75 SHEET 3 AA1 7 VAL A 90 ILE A 98 -1 O ARG A 92 N SER A 83 SHEET 4 AA1 7 ASP A 191 LEU A 199 -1 O VAL A 192 N ILE A 98 SHEET 5 AA1 7 HIS A 227 ARG A 235 -1 O LEU A 233 N TRP A 193 SHEET 6 AA1 7 LEU A 244 PRO A 252 -1 O VAL A 251 N LEU A 228 SHEET 7 AA1 7 GLN A 266 VAL A 267 -1 O VAL A 267 N ALA A 248 SHEET 1 AA2 7 ARG A 75 CYS A 76 0 SHEET 2 AA2 7 HIS A 80 ASP A 85 -1 O LEU A 82 N ARG A 75 SHEET 3 AA2 7 VAL A 90 ILE A 98 -1 O ARG A 92 N SER A 83 SHEET 4 AA2 7 ASP A 191 LEU A 199 -1 O VAL A 192 N ILE A 98 SHEET 5 AA2 7 HIS A 227 ARG A 235 -1 O LEU A 233 N TRP A 193 SHEET 6 AA2 7 LEU A 244 PRO A 252 -1 O VAL A 251 N LEU A 228 SHEET 7 AA2 7 ILE A 290 ASN A 292 1 O ARG A 291 N LEU A 244 SHEET 1 AA3 2 SER A 137 HIS A 140 0 SHEET 2 AA3 2 ILE A 163 GLN A 166 -1 O GLN A 166 N SER A 137 SHEET 1 AA4 4 GLN A 203 THR A 204 0 SHEET 2 AA4 4 LYS A 210 ILE A 217 -1 O ILE A 211 N GLN A 203 SHEET 3 AA4 4 LYS B 210 ILE B 217 -1 O VAL B 212 N TYR A 214 SHEET 4 AA4 4 PRO B 202 THR B 204 -1 N GLN B 203 O ILE B 211 SHEET 1 AA5 4 VAL A 222 ALA A 223 0 SHEET 2 AA5 4 LYS A 210 ILE A 217 -1 N ILE A 217 O VAL A 222 SHEET 3 AA5 4 LYS B 210 ILE B 217 -1 O VAL B 212 N TYR A 214 SHEET 4 AA5 4 VAL B 222 ALA B 223 -1 O VAL B 222 N ILE B 217 SHEET 1 AA6 7 ARG B 75 CYS B 76 0 SHEET 2 AA6 7 HIS B 80 ASP B 85 -1 O LEU B 82 N ARG B 75 SHEET 3 AA6 7 VAL B 90 ILE B 98 -1 O ARG B 92 N SER B 83 SHEET 4 AA6 7 ASP B 191 LEU B 199 -1 O VAL B 192 N ILE B 98 SHEET 5 AA6 7 HIS B 227 ARG B 235 -1 O LEU B 233 N TRP B 193 SHEET 6 AA6 7 ALA B 245 PRO B 252 -1 O GLY B 247 N ILE B 232 SHEET 7 AA6 7 GLN B 266 VAL B 267 -1 O VAL B 267 N ALA B 248 SHEET 1 AA7 7 ARG B 75 CYS B 76 0 SHEET 2 AA7 7 HIS B 80 ASP B 85 -1 O LEU B 82 N ARG B 75 SHEET 3 AA7 7 VAL B 90 ILE B 98 -1 O ARG B 92 N SER B 83 SHEET 4 AA7 7 ASP B 191 LEU B 199 -1 O VAL B 192 N ILE B 98 SHEET 5 AA7 7 HIS B 227 ARG B 235 -1 O LEU B 233 N TRP B 193 SHEET 6 AA7 7 ALA B 245 PRO B 252 -1 O GLY B 247 N ILE B 232 SHEET 7 AA7 7 ARG B 291 ASN B 292 1 O ARG B 291 N LEU B 246 SHEET 1 AA8 2 SER B 137 HIS B 140 0 SHEET 2 AA8 2 ILE B 163 GLN B 166 -1 O GLN B 166 N SER B 137 SSBOND 1 CYS A 294 CYS A 299 1555 1555 2.03 SSBOND 2 CYS B 294 CYS B 299 1555 1555 2.03 LINK OD1 ASN A 171 MN MN A 401 1555 1555 2.10 LINK MN MN A 401 O HOH A 505 1555 1555 2.10 LINK MN MN A 401 O HOH A 506 1555 1555 2.34 LINK MN MN A 401 O HOH A 507 1555 1555 2.18 LINK MN MN A 401 O HOH A 510 1555 1555 2.54 LINK MN MN A 401 O HOH A 522 1555 1555 1.85 LINK OD1 ASN B 171 MN MN B 401 1555 1555 1.98 LINK MN MN B 401 O HOH B 508 1555 1555 2.34 LINK MN MN B 401 O HOH B 511 1555 1555 2.29 LINK MN MN B 401 O HOH B 512 1555 1555 2.39 LINK MN MN B 401 O HOH B 518 1555 1555 2.27 LINK MN MN B 401 O HOH B 536 1555 1555 2.36 SITE 1 AC1 6 ASN A 171 HOH A 505 HOH A 506 HOH A 507 SITE 2 AC1 6 HOH A 510 HOH A 522 SITE 1 AC2 6 ARG A 109 ALA A 144 GLY A 145 ARG A 314 SITE 2 AC2 6 HOH A 509 HOH A 521 SITE 1 AC3 6 ASN B 171 HOH B 508 HOH B 511 HOH B 512 SITE 2 AC3 6 HOH B 518 HOH B 536 SITE 1 AC4 4 ARG B 109 GLY B 145 ARG B 314 HOH B 502 CRYST1 73.340 83.436 74.771 90.00 113.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013635 0.000000 0.005906 0.00000 SCALE2 0.000000 0.011985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014575 0.00000