HEADER VIRAL PROTEIN 28-AUG-16 5T42 TITLE STRUCTURE OF THE EBOLA VIRUS ENVELOPE PROTEIN MPER/TM DOMAIN AND ITS TITLE 2 INTERACTION WITH THE FUSION LOOP EXPLAINS THEIR FUSION ACTIVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 632-676; COMPND 5 SYNONYM: GP1,2,GP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZAIRE EBOLAVIRUS (STRAIN KIKWIT-95); SOURCE 3 ORGANISM_COMMON: ZEBOV; SOURCE 4 ORGANISM_TAXID: 128951; SOURCE 5 STRAIN: KIKWIT-95; SOURCE 6 GENE: GP; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS EBOLA VIRUS, MEMBRANE PROTEIN, PROTEIN-PROTEIN INTERACTION, MEMBRANE KEYWDS 2 FUSION, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.LEE,D.A.NYENHUIS,E.A.NELSON,D.S.CAFISO,J.M.WHITE,L.K.TAMM REVDAT 5 14-JUN-23 5T42 1 REMARK REVDAT 4 11-DEC-19 5T42 1 REMARK REVDAT 3 18-OCT-17 5T42 1 JRNL REVDAT 2 27-SEP-17 5T42 1 REMARK REVDAT 1 30-AUG-17 5T42 0 JRNL AUTH J.LEE,D.A.NYENHUIS,E.A.NELSON,D.S.CAFISO,J.M.WHITE,L.K.TAMM JRNL TITL STRUCTURE OF THE EBOLA VIRUS ENVELOPE PROTEIN MPER/TM DOMAIN JRNL TITL 2 AND ITS INTERACTION WITH THE FUSION LOOP EXPLAINS THEIR JRNL TITL 3 FUSION ACTIVITY. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E7987 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28874543 JRNL DOI 10.1073/PNAS.1708052114 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223551. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 125 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 500 UM [U-99% 15N] EBOV_MPER/TM, REMARK 210 90% H2O/10% D2O; 500 UM [U-99% REMARK 210 13C; U-99% 15N] EBOV_MPER/TM, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D HN(CA)CO; REMARK 210 3D CBCANH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HCCH-TOCSY; HCCCONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE, SPARKY, TALOS, REMARK 210 PROCHECKNMR, NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 666 H ALA A 670 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 632 -96.85 -136.30 REMARK 500 1 THR A 634 -22.45 -176.24 REMARK 500 1 LEU A 635 -58.56 177.66 REMARK 500 1 ASP A 637 40.64 30.52 REMARK 500 1 THR A 646 24.76 -156.57 REMARK 500 1 TRP A 651 59.06 -159.18 REMARK 500 1 PRO A 653 -76.62 -89.02 REMARK 500 1 ALA A 654 88.68 167.95 REMARK 500 2 ASP A 632 -97.91 -136.92 REMARK 500 2 THR A 634 -20.41 -177.32 REMARK 500 2 LEU A 635 -59.42 178.90 REMARK 500 2 ASP A 637 -160.40 36.31 REMARK 500 2 GLN A 638 76.96 -108.36 REMARK 500 2 ASN A 641 42.18 -173.20 REMARK 500 2 TRP A 645 24.84 -149.97 REMARK 500 2 THR A 646 21.58 -156.21 REMARK 500 2 TRP A 651 50.84 -158.90 REMARK 500 2 PRO A 653 -76.95 -94.46 REMARK 500 2 ALA A 654 96.10 167.31 REMARK 500 3 ASP A 632 -95.65 -137.99 REMARK 500 3 THR A 634 -20.46 -178.52 REMARK 500 3 LEU A 635 -58.93 177.79 REMARK 500 3 ASP A 637 39.51 30.24 REMARK 500 3 GLN A 638 98.78 51.50 REMARK 500 3 ASN A 641 92.14 -178.78 REMARK 500 3 TRP A 645 20.82 -147.62 REMARK 500 3 THR A 646 24.91 -155.60 REMARK 500 3 TRP A 651 59.04 -167.54 REMARK 500 3 ALA A 654 67.77 168.39 REMARK 500 4 ASP A 632 -99.02 -141.88 REMARK 500 4 THR A 634 -23.66 -174.46 REMARK 500 4 LEU A 635 -52.98 173.10 REMARK 500 4 ASP A 637 48.93 27.28 REMARK 500 4 GLN A 638 73.54 43.01 REMARK 500 4 ASN A 641 86.46 62.28 REMARK 500 4 THR A 646 23.34 -152.48 REMARK 500 4 TRP A 651 67.59 -175.40 REMARK 500 4 PRO A 653 -74.29 -93.82 REMARK 500 4 ALA A 654 70.34 178.67 REMARK 500 4 ALA A 667 -34.58 -39.85 REMARK 500 5 ASP A 632 -100.01 -137.54 REMARK 500 5 THR A 634 -25.14 -172.01 REMARK 500 5 LEU A 635 -53.81 175.76 REMARK 500 5 ASP A 637 39.51 29.77 REMARK 500 5 GLN A 638 94.29 41.56 REMARK 500 5 ASN A 641 19.81 -148.04 REMARK 500 5 TRP A 645 22.82 -149.27 REMARK 500 5 THR A 646 25.50 -159.30 REMARK 500 5 TRP A 651 50.60 -160.37 REMARK 500 5 ALA A 654 90.71 65.29 REMARK 500 REMARK 500 THIS ENTRY HAS 202 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30162 RELATED DB: BMRB REMARK 900 STRUCTURE OF THE EBOLA VIRUS ENVELOPE PROTEIN MPER/TM DOMAIN AND REMARK 900 ITS INTERACTION WITH THE FUSION LOOP EXPLAINS THEIR FUSION ACTIVITY DBREF 5T42 A 632 676 UNP P87666 VGP_EBOZ5 632 676 SEQADV 5T42 GLY A 630 UNP P87666 EXPRESSION TAG SEQADV 5T42 SER A 631 UNP P87666 EXPRESSION TAG SEQADV 5T42 VAL A 662 UNP P87666 ILE 662 CONFLICT SEQADV 5T42 ALA A 670 UNP P87666 CYS 670 CONFLICT SEQADV 5T42 ALA A 672 UNP P87666 CYS 672 CONFLICT SEQRES 1 A 47 GLY SER ASP LYS THR LEU PRO ASP GLN GLY ASP ASN ASP SEQRES 2 A 47 ASN TRP TRP THR GLY TRP ARG GLN TRP ILE PRO ALA GLY SEQRES 3 A 47 ILE GLY VAL THR GLY VAL VAL ILE ALA VAL ILE ALA LEU SEQRES 4 A 47 PHE ALA ILE ALA LYS PHE VAL PHE HELIX 1 AA1 GLY A 660 PHE A 676 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1