HEADER TRANSCRIPTION 29-AUG-16 5T4K TITLE PLP AND GABA TRIGGER GABR-MEDIATED TRANSCRIPTION REGULATION IN TITLE 2 BACILLUS SUBSIDIES VIA EXTERNAL ALDIMINE FORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EBO DOMAIN (UNP RESIDUES 107-471); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GABR, MOCR, PLP, GABA, EXTERNAL ALDIMINE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.WU,R.SANISHVILI,B.R.BELITSKY,J.I.JUNCOSA,H.V.LE,H.J.S.LEHRER, AUTHOR 2 M.FARLEY,R.B.SILVERMAN,G.A.PETSKO,D.RINGE,D.LIU REVDAT 6 04-OCT-23 5T4K 1 REMARK REVDAT 5 25-DEC-19 5T4K 1 REMARK REVDAT 4 27-SEP-17 5T4K 1 REMARK REVDAT 3 19-APR-17 5T4K 1 JRNL REVDAT 2 12-APR-17 5T4K 1 JRNL REVDAT 1 29-MAR-17 5T4K 0 JRNL AUTH R.WU,R.SANISHVILI,B.R.BELITSKY,J.I.JUNCOSA,H.V.LE, JRNL AUTH 2 H.J.LEHRER,M.FARLEY,R.B.SILVERMAN,G.A.PETSKO,D.RINGE,D.LIU JRNL TITL PLP AND GABA TRIGGER GABR-MEDIATED TRANSCRIPTION REGULATION JRNL TITL 2 IN BACILLUS SUBTILIS VIA EXTERNAL ALDIMINE FORMATION. JRNL REF PROC. NATL. ACAD. SCI. V. 114 3891 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28348215 JRNL DOI 10.1073/PNAS.1703019114 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1563 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 20139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.8103 - 4.2938 0.97 2801 154 0.1513 0.2154 REMARK 3 2 4.2938 - 3.4083 0.99 2742 143 0.1569 0.1799 REMARK 3 3 3.4083 - 2.9776 0.99 2729 152 0.1886 0.2563 REMARK 3 4 2.9776 - 2.7053 1.00 2715 145 0.2137 0.2655 REMARK 3 5 2.7053 - 2.5114 1.00 2725 135 0.2262 0.2829 REMARK 3 6 2.5114 - 2.3634 1.00 2723 144 0.2544 0.3104 REMARK 3 7 2.3634 - 2.2450 0.99 2673 158 0.2734 0.3259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3009 REMARK 3 ANGLE : 0.604 4063 REMARK 3 CHIRALITY : 0.024 442 REMARK 3 PLANARITY : 0.003 521 REMARK 3 DIHEDRAL : 14.841 1169 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9817 -8.4251 19.5155 REMARK 3 T TENSOR REMARK 3 T11: 0.3898 T22: 0.3606 REMARK 3 T33: 0.4212 T12: -0.0721 REMARK 3 T13: -0.0464 T23: 0.0600 REMARK 3 L TENSOR REMARK 3 L11: 1.5885 L22: 0.4080 REMARK 3 L33: 2.4470 L12: -0.1480 REMARK 3 L13: -1.5774 L23: -0.3850 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: -0.1571 S13: 0.0875 REMARK 3 S21: 0.1575 S22: -0.1777 S23: -0.1841 REMARK 3 S31: -0.2992 S32: 0.4396 S33: 0.1493 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2705 -10.4012 -3.8188 REMARK 3 T TENSOR REMARK 3 T11: 0.3051 T22: 0.2117 REMARK 3 T33: 0.2782 T12: -0.0023 REMARK 3 T13: -0.0229 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 2.2604 L22: 0.8531 REMARK 3 L33: 1.6586 L12: 0.1974 REMARK 3 L13: -0.3972 L23: -0.6894 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: 0.0285 S13: 0.1075 REMARK 3 S21: -0.1597 S22: 0.0249 S23: 0.0969 REMARK 3 S31: 0.3060 S32: 0.0059 S33: 0.0107 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7896 -18.2300 4.0987 REMARK 3 T TENSOR REMARK 3 T11: 0.3128 T22: 0.3350 REMARK 3 T33: 0.3239 T12: -0.0552 REMARK 3 T13: -0.0223 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.7427 L22: 2.4015 REMARK 3 L33: 2.0955 L12: 0.6250 REMARK 3 L13: -0.4499 L23: -0.3146 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: 0.0496 S13: -0.0329 REMARK 3 S21: -0.0184 S22: -0.0045 S23: 0.2084 REMARK 3 S31: 0.3506 S32: -0.3013 S33: -0.0688 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 345 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4883 -18.0413 10.7167 REMARK 3 T TENSOR REMARK 3 T11: 0.3434 T22: 0.2503 REMARK 3 T33: 0.2977 T12: 0.0090 REMARK 3 T13: 0.0167 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.4571 L22: 1.4222 REMARK 3 L33: 4.3529 L12: 0.2208 REMARK 3 L13: -0.4834 L23: -1.1005 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.0389 S13: -0.2476 REMARK 3 S21: -0.0959 S22: -0.2742 S23: -0.0512 REMARK 3 S31: 0.6976 S32: 0.6458 S33: 0.1818 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 386 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0388 -14.2957 28.1537 REMARK 3 T TENSOR REMARK 3 T11: 0.3913 T22: 0.3071 REMARK 3 T33: 0.2830 T12: -0.0830 REMARK 3 T13: 0.0615 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.9715 L22: 2.2800 REMARK 3 L33: 2.6788 L12: -0.8231 REMARK 3 L13: 1.1375 L23: -0.4596 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: -0.3542 S13: 0.0387 REMARK 3 S21: 0.5478 S22: 0.0243 S23: 0.3066 REMARK 3 S31: -0.3335 S32: -0.2884 S33: -0.0117 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 454 THROUGH 471 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8329 -13.6167 34.7032 REMARK 3 T TENSOR REMARK 3 T11: 0.7017 T22: 0.4135 REMARK 3 T33: 0.3648 T12: -0.1729 REMARK 3 T13: -0.0342 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 6.1854 L22: 3.2907 REMARK 3 L33: 3.1529 L12: 1.1998 REMARK 3 L13: -1.9033 L23: -1.1097 REMARK 3 S TENSOR REMARK 3 S11: 0.2758 S12: -0.7548 S13: 0.0306 REMARK 3 S21: 0.7976 S22: -0.1642 S23: -0.0393 REMARK 3 S31: 0.2042 S32: 0.3805 S33: -0.1456 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20140 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.245 REMARK 200 RESOLUTION RANGE LOW (A) : 50.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5T4J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS (PH: 8.5) AND 20% ETHANOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.79000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.79000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.31500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.76500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.31500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.76500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.79000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.31500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.76500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.79000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.31500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.76500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 688 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 435 REMARK 465 ASN A 436 REMARK 465 LYS A 437 REMARK 465 ARG A 438 REMARK 465 GLN A 439 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 444 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 266 O HOH A 601 1.89 REMARK 500 O HOH A 767 O HOH A 781 2.09 REMARK 500 O HOH A 620 O HOH A 662 2.11 REMARK 500 OE1 GLU A 270 O HOH A 602 2.11 REMARK 500 O HOH A 680 O HOH A 748 2.12 REMARK 500 OH TYR A 360 O HOH A 603 2.12 REMARK 500 O HOH A 724 O HOH A 756 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 651 O HOH A 745 6444 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 108 69.66 -108.43 REMARK 500 ALA A 179 43.69 -95.46 REMARK 500 ASP A 225 -161.03 -112.79 REMARK 500 HIS A 248 99.16 -163.38 REMARK 500 ASP A 280 40.69 -85.68 REMARK 500 PHE A 301 -154.53 -123.56 REMARK 500 LEU A 314 -115.40 -108.80 REMARK 500 ARG A 319 65.67 60.42 REMARK 500 GLU A 389 34.25 -95.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 76U A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T4L RELATED DB: PDB DBREF 5T4K A 107 471 UNP P94426 GABR_BACSU 107 471 SEQADV 5T4K ALA A 140 UNP P94426 ARG 140 CONFLICT SEQADV 5T4K ALA A 273 UNP P94426 ARG 273 CONFLICT SEQADV 5T4K GLU A 290 UNP P94426 ASP 290 CONFLICT SEQADV 5T4K THR A 444 UNP P94426 ALA 444 CONFLICT SEQRES 1 A 365 SER ASP TRP ILE SER PHE SER HIS MET SER SER ASP THR SEQRES 2 A 365 ASP HIS PHE PRO ILE LYS SER TRP PHE ARG CYS GLU GLN SEQRES 3 A 365 LYS ALA ALA SER ARG SER TYR ALA THR LEU GLY ASP MET SEQRES 4 A 365 SER HIS PRO GLN GLY ILE TYR GLU VAL ARG ALA ALA ILE SEQRES 5 A 365 THR ARG LEU ILE SER LEU THR ARG GLY VAL LYS CYS ARG SEQRES 6 A 365 PRO GLU GLN MET ILE ILE GLY ALA GLY THR GLN VAL LEU SEQRES 7 A 365 MET GLN LEU LEU THR GLU LEU LEU PRO LYS GLU ALA VAL SEQRES 8 A 365 TYR ALA MET GLU GLU PRO GLY TYR ARG ARG MET TYR GLN SEQRES 9 A 365 LEU LEU LYS ASN ALA GLY LYS GLN VAL LYS THR ILE MET SEQRES 10 A 365 LEU ASP GLU LYS GLY MET SER ILE ALA GLU ILE THR ARG SEQRES 11 A 365 GLN GLN PRO ASP VAL LEU VAL THR THR PRO SER HIS GLN SEQRES 12 A 365 PHE PRO SER GLY THR ILE MET PRO VAL SER ARG ARG ILE SEQRES 13 A 365 GLN LEU LEU ASN TRP ALA ALA GLU GLU PRO ALA ARG TYR SEQRES 14 A 365 ILE ILE GLU ASP ASP TYR ASP SER GLU PHE THR TYR ASP SEQRES 15 A 365 VAL GLU SER ILE PRO ALA LEU GLN SER LEU ASP ARG PHE SEQRES 16 A 365 GLN ASN VAL ILE TYR MET GLY THR PHE SER LYS SER LEU SEQRES 17 A 365 LEU PRO GLY LEU ARG ILE SER TYR MET VAL LEU PRO PRO SEQRES 18 A 365 GLU LEU LEU ARG ALA TYR LYS GLN ARG GLY TYR ASP LEU SEQRES 19 A 365 GLN THR CYS SER SER LEU THR GLN LEU THR LEU GLN GLU SEQRES 20 A 365 PHE ILE GLU SER GLY GLU TYR GLN LYS HIS ILE LYS LYS SEQRES 21 A 365 MET LYS GLN HIS TYR LYS GLU LYS ARG GLU ARG LEU ILE SEQRES 22 A 365 THR ALA LEU GLU ALA GLU PHE SER GLY GLU VAL THR VAL SEQRES 23 A 365 LYS GLY ALA ASN ALA GLY LEU HIS PHE VAL THR GLU PHE SEQRES 24 A 365 ASP THR ARG ARG THR GLU GLN ASP ILE LEU SER HIS ALA SEQRES 25 A 365 ALA GLY LEU GLN LEU GLU ILE PHE GLY MET SER ARG PHE SEQRES 26 A 365 ASN LEU LYS GLU ASN LYS ARG GLN THR GLY ARG PRO THR SEQRES 27 A 365 LEU ILE ILE GLY PHE ALA ARG LEU LYS GLU GLU ASP ILE SEQRES 28 A 365 GLN GLU GLY VAL GLN ARG LEU PHE LYS ALA VAL TYR GLY SEQRES 29 A 365 HIS HET 76U A 501 24 HETNAM 76U (4S)-5-FLUORO-4-[({3-HYDROXY-2-METHYL-5- HETNAM 2 76U [(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL) HETNAM 3 76U AMINO]PENTANOIC ACID FORMUL 2 76U C13 H20 F N2 O7 P FORMUL 3 HOH *182(H2 O) HELIX 1 AA1 PRO A 123 SER A 138 1 16 HELIX 2 AA2 TYR A 139 ASP A 144 5 6 HELIX 3 AA3 ILE A 151 ARG A 166 1 16 HELIX 4 AA4 ARG A 171 GLU A 173 5 3 HELIX 5 AA5 GLY A 180 LEU A 192 1 13 HELIX 6 AA6 TYR A 205 ALA A 215 1 11 HELIX 7 AA7 SER A 230 GLN A 238 1 9 HELIX 8 AA8 PRO A 257 GLU A 270 1 14 HELIX 9 AA9 ALA A 294 ASP A 299 1 6 HELIX 10 AB1 LEU A 315 ARG A 319 5 5 HELIX 11 AB2 PRO A 326 GLN A 335 1 10 HELIX 12 AB3 SER A 344 SER A 357 1 14 HELIX 13 AB4 GLY A 358 PHE A 386 1 29 HELIX 14 AB5 THR A 410 LEU A 421 1 12 HELIX 15 AB6 SER A 429 ASN A 432 5 4 HELIX 16 AB7 LYS A 453 GLU A 455 5 3 HELIX 17 AB8 ASP A 456 GLY A 470 1 15 SHEET 1 AA1 2 ILE A 110 SER A 111 0 SHEET 2 AA1 2 LEU A 423 GLU A 424 1 O GLU A 424 N ILE A 110 SHEET 1 AA2 7 MET A 175 ILE A 176 0 SHEET 2 AA2 7 SER A 321 VAL A 324 -1 O MET A 323 N ILE A 176 SHEET 3 AA2 7 VAL A 304 THR A 309 -1 N TYR A 306 O VAL A 324 SHEET 4 AA2 7 TYR A 275 ASP A 279 1 N ILE A 276 O ILE A 305 SHEET 5 AA2 7 VAL A 241 THR A 244 1 N LEU A 242 O ILE A 277 SHEET 6 AA2 7 TYR A 198 GLU A 201 1 N ALA A 199 O VAL A 241 SHEET 7 AA2 7 VAL A 219 ILE A 222 1 O LYS A 220 N TYR A 198 SHEET 1 AA3 2 LEU A 224 ASP A 225 0 SHEET 2 AA3 2 GLY A 228 MET A 229 -1 O GLY A 228 N ASP A 225 SHEET 1 AA4 4 VAL A 390 LYS A 393 0 SHEET 2 AA4 4 HIS A 400 PHE A 405 -1 O VAL A 402 N LYS A 393 SHEET 3 AA4 4 THR A 444 GLY A 448 -1 O ILE A 447 N PHE A 401 SHEET 4 AA4 4 PHE A 426 GLY A 427 -1 N PHE A 426 O ILE A 446 CISPEP 1 ILE A 177 GLY A 178 0 -5.33 CISPEP 2 GLU A 202 PRO A 203 0 2.20 CISPEP 3 PHE A 250 PRO A 251 0 4.27 SITE 1 AC1 18 HIS A 114 MET A 115 GLY A 180 THR A 181 SITE 2 AC1 18 TYR A 205 ARG A 207 PHE A 250 ASP A 279 SITE 3 AC1 18 TYR A 281 THR A 309 SER A 311 ARG A 319 SITE 4 AC1 18 SER A 321 ARG A 430 PHE A 431 HOH A 611 SITE 5 AC1 18 HOH A 614 HOH A 689 CRYST1 96.630 127.530 67.580 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010349 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014797 0.00000