data_5T56 # _entry.id 5T56 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5T56 pdb_00005t56 10.2210/pdb5t56/pdb WWPDB D_1000223696 ? ? BMRB 30165 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details '[3]catenane from MccJ25 G12R/I13C/G21C lasso peptide' _pdbx_database_related.db_id 30165 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5T56 _pdbx_database_status.recvd_initial_deposition_date 2016-08-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Link, A.J.' 1 'Allen, C.D.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Am. Chem. Soc.' _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 138 _citation.language ? _citation.page_first 14214 _citation.page_last 14217 _citation.title 'Self-Assembly of Catenanes from Lasso Peptides.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.6b09454 _citation.pdbx_database_id_PubMed 27768305 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Allen, C.D.' 1 ? primary 'Link, A.J.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Microcin J25' 1290.427 2 ? 'UNP residues 38-48' ? ? 2 polymer man 'Microcin J25' 990.154 2 ? 'UNP residues 51-57' ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 MccJ25 2 MccJ25 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GGAGHVPEYFVR GGAGHVPEYFVR A,C ? 2 'polypeptide(L)' no no CGTPISFYC CGTPISFYC B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 ALA n 1 4 GLY n 1 5 HIS n 1 6 VAL n 1 7 PRO n 1 8 GLU n 1 9 TYR n 1 10 PHE n 1 11 VAL n 1 12 ARG n 2 1 CYS n 2 2 GLY n 2 3 THR n 2 4 PRO n 2 5 ILE n 2 6 SER n 2 7 PHE n 2 8 TYR n 2 9 CYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 12 ? ? mcjA ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 9 ? ? mcjA ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP MCJA_ECOLX Q9X2V7 ? 1 GGAGHVPEYFV 38 2 UNP MCJA_ECOLX Q9X2V7 ? 2 GTPISFY 51 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5T56 A 1 ? 11 ? Q9X2V7 38 ? 48 ? 1 11 2 2 5T56 B 2 ? 8 ? Q9X2V7 51 ? 57 ? 14 20 3 1 5T56 C 1 ? 11 ? Q9X2V7 38 ? 48 ? 22 32 4 2 5T56 D 2 ? 8 ? Q9X2V7 51 ? 57 ? 35 41 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5T56 ARG A 12 ? UNP Q9X2V7 ? ? 'expression tag' 12 1 2 5T56 CYS B 1 ? UNP Q9X2V7 ? ? 'expression tag' 13 2 2 5T56 CYS B 9 ? UNP Q9X2V7 ? ? 'expression tag' 21 3 3 5T56 ARG C 12 ? UNP Q9X2V7 ? ? 'expression tag' 33 4 4 5T56 CYS D 1 ? UNP Q9X2V7 ? ? 'expression tag' 34 5 4 5T56 CYS D 9 ? UNP Q9X2V7 ? ? 'expression tag' 42 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY' 1 isotropic 2 1 1 '2D TOCSY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 295 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH . _pdbx_nmr_exptl_sample_conditions.ionic_strength . _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units ? _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '3.7 mg/mL [3]catenane from MccJ25 RCC lasso peptide, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' _pdbx_nmr_sample_details.label 1H_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 5T56 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5T56 _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5T56 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'target function' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement GROMACS 5.1.1 'Abraham, Hess, van der Spoel, Lindahl' 2 'structure calculation' CYANA 2.1 'Guntert, Mumenthaler and Wuthrich' 3 'data analysis' MestReNova 9.0.1 'Mestrelab Research S.L.' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5T56 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5T56 _struct.title '[3]catenane from MccJ25 G12R/I13C/G21C lasso peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5T56 _struct_keywords.text 'Catenane, Lasso Peptide, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? B CYS 1 SG ? ? ? 1_555 D CYS 9 SG ? ? B CYS 13 D CYS 42 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf2 disulf ? ? B CYS 9 SG ? ? ? 1_555 D CYS 1 SG ? ? B CYS 21 D CYS 34 1_555 ? ? ? ? ? ? ? 2.038 ? ? covale1 covale one ? A GLY 1 N ? ? ? 1_555 A GLU 8 CD ? ? A GLY 1 A GLU 8 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale2 covale one ? C GLY 1 N ? ? ? 1_555 C GLU 8 CD ? ? C GLY 22 C GLU 29 1_555 ? ? ? ? ? ? ? 1.335 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 6 ? PRO A 7 ? VAL A 6 PRO A 7 AA1 2 PHE B 7 ? TYR B 8 ? PHE B 19 TYR B 20 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 6 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 6 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id TYR _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 8 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id TYR _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 20 # _atom_sites.entry_id 5T56 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 ARG 12 12 12 ARG ARG A . n B 2 1 CYS 1 13 13 CYS CYS B . n B 2 2 GLY 2 14 14 GLY GLY B . n B 2 3 THR 3 15 15 THR THR B . n B 2 4 PRO 4 16 16 PRO PRO B . n B 2 5 ILE 5 17 17 ILE ILE B . n B 2 6 SER 6 18 18 SER SER B . n B 2 7 PHE 7 19 19 PHE PHE B . n B 2 8 TYR 8 20 20 TYR TYR B . n B 2 9 CYS 9 21 21 CYS CYS B . n C 1 1 GLY 1 22 22 GLY GLY C . n C 1 2 GLY 2 23 23 GLY GLY C . n C 1 3 ALA 3 24 24 ALA ALA C . n C 1 4 GLY 4 25 25 GLY GLY C . n C 1 5 HIS 5 26 26 HIS HIS C . n C 1 6 VAL 6 27 27 VAL VAL C . n C 1 7 PRO 7 28 28 PRO PRO C . n C 1 8 GLU 8 29 29 GLU GLU C . n C 1 9 TYR 9 30 30 TYR TYR C . n C 1 10 PHE 10 31 31 PHE PHE C . n C 1 11 VAL 11 32 32 VAL VAL C . n C 1 12 ARG 12 33 33 ARG ARG C . n D 2 1 CYS 1 34 34 CYS CYS D . n D 2 2 GLY 2 35 35 GLY GLY D . n D 2 3 THR 3 36 36 THR THR D . n D 2 4 PRO 4 37 37 PRO PRO D . n D 2 5 ILE 5 38 38 ILE ILE D . n D 2 6 SER 6 39 39 SER SER D . n D 2 7 PHE 7 40 40 PHE PHE D . n D 2 8 TYR 8 41 41 TYR TYR D . n D 2 9 CYS 9 42 42 CYS CYS D . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-07-12 2 'Structure model' 1 1 2022-02-23 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_nmr_spectrometer 3 2 'Structure model' pdbx_struct_assembly 4 2 'Structure model' pdbx_struct_assembly_gen 5 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_nmr_spectrometer.model' 4 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component '[3]catenane from MccJ25 RCC lasso peptide' _pdbx_nmr_exptl_sample.concentration 3.7 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mg/mL _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH1 C ARG 33 ? ? 124.81 120.30 4.51 0.50 N 2 1 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH2 C ARG 33 ? ? 116.83 120.30 -3.47 0.50 N 3 2 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH1 C ARG 33 ? ? 123.92 120.30 3.62 0.50 N 4 2 CB D TYR 41 ? ? CG D TYR 41 ? ? CD1 D TYR 41 ? ? 116.99 121.00 -4.01 0.60 N 5 3 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH1 A ARG 12 ? ? 124.61 120.30 4.31 0.50 N 6 3 CB B TYR 20 ? ? CG B TYR 20 ? ? CD1 B TYR 20 ? ? 117.34 121.00 -3.66 0.60 N 7 4 CA B CYS 21 ? ? CB B CYS 21 ? ? SG B CYS 21 ? ? 120.86 114.20 6.66 1.10 N 8 5 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH2 C ARG 33 ? ? 123.63 120.30 3.33 0.50 N 9 6 CB C TYR 30 ? ? CG C TYR 30 ? ? CD1 C TYR 30 ? ? 117.19 121.00 -3.81 0.60 N 10 6 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH1 C ARG 33 ? ? 124.14 120.30 3.84 0.50 N 11 6 CB D TYR 41 ? ? CG D TYR 41 ? ? CD1 D TYR 41 ? ? 116.89 121.00 -4.11 0.60 N 12 7 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH1 C ARG 33 ? ? 123.43 120.30 3.13 0.50 N 13 8 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH1 A ARG 12 ? ? 125.24 120.30 4.94 0.50 N 14 8 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH2 C ARG 33 ? ? 123.31 120.30 3.01 0.50 N 15 9 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH1 A ARG 12 ? ? 125.14 120.30 4.84 0.50 N 16 9 CB C TYR 30 ? ? CG C TYR 30 ? ? CD1 C TYR 30 ? ? 114.59 121.00 -6.41 0.60 N 17 9 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH1 C ARG 33 ? ? 125.58 120.30 5.28 0.50 N 18 9 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH2 C ARG 33 ? ? 116.68 120.30 -3.62 0.50 N 19 10 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH1 A ARG 12 ? ? 124.06 120.30 3.76 0.50 N 20 10 CA B CYS 21 ? ? CB B CYS 21 ? ? SG B CYS 21 ? ? 120.94 114.20 6.74 1.10 N 21 10 CB D TYR 41 ? ? CG D TYR 41 ? ? CD1 D TYR 41 ? ? 117.04 121.00 -3.96 0.60 N 22 11 CB C TYR 30 ? ? CG C TYR 30 ? ? CD2 C TYR 30 ? ? 116.14 121.00 -4.86 0.60 N 23 11 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH1 C ARG 33 ? ? 123.53 120.30 3.23 0.50 N 24 12 CB C TYR 30 ? ? CG C TYR 30 ? ? CD1 C TYR 30 ? ? 117.14 121.00 -3.86 0.60 N 25 12 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH1 C ARG 33 ? ? 124.51 120.30 4.21 0.50 N 26 12 CB D TYR 41 ? ? CG D TYR 41 ? ? CD1 D TYR 41 ? ? 117.18 121.00 -3.82 0.60 N 27 13 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH1 C ARG 33 ? ? 124.32 120.30 4.02 0.50 N 28 13 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH2 C ARG 33 ? ? 116.54 120.30 -3.76 0.50 N 29 13 CA D THR 36 ? ? CB D THR 36 ? ? CG2 D THR 36 ? ? 121.39 112.40 8.99 1.40 N 30 14 CB B TYR 20 ? ? CG B TYR 20 ? ? CD2 B TYR 20 ? ? 116.86 121.00 -4.14 0.60 N 31 14 CB D TYR 41 ? ? CG D TYR 41 ? ? CD2 D TYR 41 ? ? 117.08 121.00 -3.92 0.60 N 32 16 CB C TYR 30 ? ? CG C TYR 30 ? ? CD1 C TYR 30 ? ? 116.32 121.00 -4.68 0.60 N 33 17 NE A ARG 12 ? ? CZ A ARG 12 ? ? NH1 A ARG 12 ? ? 125.05 120.30 4.75 0.50 N 34 17 CB D TYR 41 ? ? CG D TYR 41 ? ? CD2 D TYR 41 ? ? 117.18 121.00 -3.82 0.60 N 35 18 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH1 C ARG 33 ? ? 123.98 120.30 3.68 0.50 N 36 18 CA D THR 36 ? ? CB D THR 36 ? ? CG2 D THR 36 ? ? 124.94 112.40 12.54 1.40 N 37 19 CB A TYR 9 ? ? CG A TYR 9 ? ? CD2 A TYR 9 ? ? 115.54 121.00 -5.46 0.60 N 38 19 CB A TYR 9 ? ? CG A TYR 9 ? ? CD1 A TYR 9 ? ? 125.35 121.00 4.35 0.60 N 39 19 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH1 C ARG 33 ? ? 125.34 120.30 5.04 0.50 N 40 20 NE C ARG 33 ? ? CZ C ARG 33 ? ? NH1 C ARG 33 ? ? 124.49 120.30 4.19 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE B 17 ? ? -109.36 -94.64 2 1 ALA C 24 ? ? -142.98 23.31 3 1 GLU C 29 ? ? -143.32 -60.14 4 1 PHE C 31 ? ? -89.78 -73.00 5 1 ILE D 38 ? ? -125.97 -50.41 6 1 PHE D 40 ? ? -115.88 -167.42 7 1 TYR D 41 ? ? -86.46 -73.24 8 2 ALA A 3 ? ? -69.23 -178.37 9 2 PHE A 10 ? ? -56.26 173.53 10 2 GLU C 29 ? ? -126.15 -60.73 11 2 ILE D 38 ? ? -116.79 -70.66 12 3 TYR B 20 ? ? -78.97 -157.50 13 3 ILE D 38 ? ? -112.79 -103.20 14 4 PHE A 10 ? ? -107.19 -168.62 15 4 VAL A 11 ? ? -65.45 95.15 16 4 ILE B 17 ? ? -74.76 -75.98 17 4 TYR B 20 ? ? -76.98 -75.37 18 4 PHE C 31 ? ? -85.41 -71.78 19 5 TYR B 20 ? ? -68.58 -161.91 20 6 HIS A 5 ? ? -155.84 -7.13 21 6 PRO B 16 ? ? -44.77 151.24 22 6 TYR B 20 ? ? -79.08 -166.30 23 6 ILE D 38 ? ? -133.55 -83.44 24 7 ILE B 17 ? ? -105.34 -75.30 25 7 PRO D 37 ? ? -59.39 178.77 26 7 ILE D 38 ? ? -125.00 -87.97 27 8 HIS A 5 ? ? -140.97 -26.90 28 8 GLU A 8 ? ? -131.46 -48.30 29 8 THR B 15 ? ? 90.10 142.96 30 8 ILE B 17 ? ? -111.64 -89.72 31 8 TYR C 30 ? ? 43.18 74.04 32 8 ILE D 38 ? ? -106.20 -70.93 33 10 TYR B 20 ? ? -66.17 -81.53 34 10 PRO D 37 ? ? -44.87 167.24 35 11 HIS A 5 ? ? -83.27 -84.76 36 11 GLU A 8 ? ? -88.09 -70.52 37 11 PHE A 10 ? ? -68.00 -179.26 38 11 THR B 15 ? ? 64.23 153.56 39 11 HIS C 26 ? ? -141.12 -1.76 40 11 PHE C 31 ? ? -130.69 -151.71 41 12 PHE A 10 ? ? -142.32 -146.87 42 12 ILE B 17 ? ? -124.78 -109.42 43 12 GLU C 29 ? ? -126.63 -66.70 44 12 PHE C 31 ? ? -137.78 -49.72 45 13 GLU A 8 ? ? -112.64 -85.25 46 13 PHE A 10 ? ? -68.31 -171.57 47 13 ILE B 17 ? ? -105.70 -79.39 48 13 THR D 36 ? ? 70.02 164.63 49 13 PRO D 37 ? ? -49.24 171.03 50 13 ILE D 38 ? ? -124.22 -63.73 51 14 PHE A 10 ? ? -114.51 -155.68 52 14 ILE D 38 ? ? -99.39 -81.53 53 15 HIS C 26 ? ? -159.68 -28.43 54 15 PRO D 37 ? ? -46.60 150.42 55 15 TYR D 41 ? ? -76.44 -71.03 56 16 GLU A 8 ? ? -148.83 -14.49 57 16 TYR B 20 ? ? -84.27 -140.98 58 16 TYR C 30 ? ? 53.53 81.94 59 16 ILE D 38 ? ? -111.44 -80.29 60 16 PHE D 40 ? ? -135.68 -148.42 61 16 TYR D 41 ? ? -119.98 -96.32 62 17 THR B 15 ? ? 64.54 147.93 63 17 ILE B 17 ? ? -106.47 -100.04 64 17 GLU C 29 ? ? -105.73 -88.29 65 17 PHE C 31 ? ? -67.16 -179.81 66 18 PHE A 10 ? ? -58.61 -175.51 67 18 TYR B 20 ? ? -81.60 -116.80 68 18 THR D 36 ? ? 63.05 166.29 69 18 PRO D 37 ? ? -45.01 170.52 70 19 HIS C 26 ? ? -69.10 2.59 71 20 GLU A 8 ? ? -130.72 -36.17 72 20 PHE A 10 ? ? -71.45 -151.99 73 20 TYR B 20 ? ? -75.63 -166.10 74 20 PHE C 31 ? ? -67.67 -172.07 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 2 GLY A 4 ? ? HIS A 5 ? ? -145.20 2 4 GLY B 14 ? ? THR B 15 ? ? -144.26 3 5 PHE B 19 ? ? TYR B 20 ? ? 144.57 4 6 GLY D 35 ? ? THR D 36 ? ? -147.34 5 7 GLY C 25 ? ? HIS C 26 ? ? -149.24 6 8 GLY C 25 ? ? HIS C 26 ? ? -148.14 7 11 TYR D 41 ? ? CYS D 42 ? ? -139.96 8 13 GLY A 4 ? ? HIS A 5 ? ? -148.14 9 19 GLY A 4 ? ? HIS A 5 ? ? -140.27 10 20 TYR B 20 ? ? CYS B 21 ? ? 143.81 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 3 ARG C 33 ? ? 0.146 'SIDE CHAIN' 2 5 TYR A 9 ? ? 0.089 'SIDE CHAIN' 3 8 ARG C 33 ? ? 0.086 'SIDE CHAIN' 4 8 TYR D 41 ? ? 0.075 'SIDE CHAIN' 5 10 PHE D 40 ? ? 0.077 'SIDE CHAIN' 6 11 ARG C 33 ? ? 0.082 'SIDE CHAIN' 7 18 TYR C 30 ? ? 0.069 'SIDE CHAIN' 8 18 TYR D 41 ? ? 0.064 'SIDE CHAIN' 9 20 TYR A 9 ? ? 0.073 'SIDE CHAIN' #