HEADER OXIDOREDUCTASE 30-AUG-16 5T57 TITLE CRYSTAL STRUCTURE OF A SEMIALDEHYDE DEHYDROGENASE NAD-BINDING PROTEIN TITLE 2 FROM CUPRIAVIDUS NECATOR IN COMPLEX WITH CALCIUM AND NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEMIALDEHYDE DEHYDROGENASE NAD-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG COMPND 6 MGSSHHHHHHSSGLVPRGSH AT THE N-TERMINUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUPRIAVIDUS NECATOR (STRAIN ATCC 43291 / DSM SOURCE 3 13513 / N-1); SOURCE 4 ORGANISM_TAXID: 1042878; SOURCE 5 STRAIN: ATCC 43291 / DSM 13513 / N-1; SOURCE 6 ATCC: 43291; SOURCE 7 GENE: CNE_BB1P11570; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SEMIALDEHYDE DEHYDROGENASE NAD-BINDING PROTEIN, OXIDOISOMERASE, KEYWDS 2 CUPRIAVIDUS NECATOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.J.COOK,A.A.FEDOROV,E.V.FEDOROV,H.HUANG,J.B.BONANNO,J.A.GERLT, AUTHOR 2 S.C.ALMO REVDAT 6 04-OCT-23 5T57 1 LINK REVDAT 5 25-DEC-19 5T57 1 REMARK REVDAT 4 13-SEP-17 5T57 1 REMARK REVDAT 3 03-MAY-17 5T57 1 AUTHOR JRNL REVDAT 2 21-SEP-16 5T57 1 AUTHOR JRNL REVDAT 1 14-SEP-16 5T57 0 JRNL AUTH W.J.COOK,A.A.FEDOROV,E.V.FEDOROV,H.HUANG,J.B.BONANNO, JRNL AUTH 2 J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A SEMIALDEHYDE DEHYDROGENASE JRNL TITL 2 NAD-BINDING PROTEIN FROM CUPRIAVIDUS NECATOR IN COMPLEX WITH JRNL TITL 3 CALCIUM AND NAD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2522 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2123 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.13000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : 0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.193 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2208 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2157 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2992 ; 1.956 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4968 ; 1.096 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 275 ; 5.712 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;34.961 ;23.696 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;13.666 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.084 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2442 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 471 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1103 ; 2.249 ; 2.205 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1102 ; 2.241 ; 2.205 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1377 ; 3.150 ; 3.299 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5T57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DIAMOND REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36952 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.646 REMARK 200 RESOLUTION RANGE LOW (A) : 19.956 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.91900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 3C24 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2, 20 (W/V) PEB-3350, 5 MM REMARK 280 MG, 5 MM NAD+, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.95150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.57000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.95150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.57000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -199.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -87.90300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 178 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 256 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 257 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 274 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 274 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 -156.38 -114.75 REMARK 500 HIS A 117 155.56 71.75 REMARK 500 LEU A 170 -88.79 -89.14 REMARK 500 ILE A 191 -73.34 -82.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 GLU A 184 OE2 92.1 REMARK 620 3 HOH A 405 O 143.8 90.4 REMARK 620 4 HOH A 412 O 126.8 101.6 87.8 REMARK 620 5 HOH A 426 O 67.2 89.9 149.0 61.8 REMARK 620 6 HOH A 464 O 73.7 97.7 70.2 150.7 140.4 REMARK 620 7 HOH A 501 O 80.7 166.8 101.9 74.5 77.2 90.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 GLU A 184 OE1 98.7 REMARK 620 3 HIS A 223 NE2 151.4 83.2 REMARK 620 4 HOH A 520 O 116.2 119.6 86.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 DBREF 5T57 A 1 276 UNP F8GV06 F8GV06_CUPNN 1 276 SEQADV 5T57 MET A -19 UNP F8GV06 INITIATING METHIONINE SEQADV 5T57 GLY A -18 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 SER A -17 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 SER A -16 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 HIS A -15 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 HIS A -14 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 HIS A -13 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 HIS A -12 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 HIS A -11 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 HIS A -10 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 SER A -9 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 SER A -8 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 GLY A -7 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 LEU A -6 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 VAL A -5 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 PRO A -4 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 ARG A -3 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 GLY A -2 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 SER A -1 UNP F8GV06 EXPRESSION TAG SEQADV 5T57 HIS A 0 UNP F8GV06 EXPRESSION TAG SEQRES 1 A 296 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 296 LEU VAL PRO ARG GLY SER HIS MET LYS GLU LYS ILE ALA SEQRES 3 A 296 LEU PHE GLY ALA GLY GLY LYS MET GLY VAL ARG LEU ALA SEQRES 4 A 296 LYS ASN LEU LEU LYS SER ASP TYR ARG VAL SER HIS VAL SEQRES 5 A 296 GLU VAL SER GLU VAL GLY LYS LYS ARG LEU LYS ASP GLU SEQRES 6 A 296 LEU GLY LEU GLU CYS VAL SER THR GLU ALA ALA LEU ASP SEQRES 7 A 296 ASN VAL ASP VAL VAL ILE LEU ALA VAL PRO ASP THR ILE SEQRES 8 A 296 ILE GLY LYS ILE ALA ALA GLN ILE ALA PRO GLN LEU ARG SEQRES 9 A 296 PRO GLY THR MET VAL MET THR LEU ASP ALA ALA ALA PRO SEQRES 10 A 296 PHE ALA GLY HIS LEU PRO ASP ARG PRO ASP LEU THR TYR SEQRES 11 A 296 PHE VAL ALA HIS PRO CYS HIS PRO LEU ILE PHE ASN ASP SEQRES 12 A 296 GLU THR ASP PRO GLU ALA ARG ARG ASP TYR PHE GLY GLY SEQRES 13 A 296 GLY ALA ALA LYS GLN SER ILE THR SER ALA LEU MET GLN SEQRES 14 A 296 GLY PRO GLU GLU ALA PHE ASP LEU GLY GLU ALA VAL ALA SEQRES 15 A 296 LYS VAL ILE TYR ALA PRO ILE LEU ARG SER TYR ARG LEU SEQRES 16 A 296 THR VAL ASP GLN MET ALA LEU LEU GLU PRO GLY LEU SER SEQRES 17 A 296 GLU THR ILE CYS ALA THR LEU LEU GLN VAL MET ARG GLU SEQRES 18 A 296 ALA MET ASP GLU THR VAL ARG ARG GLY VAL PRO LYS GLU SEQRES 19 A 296 ALA ALA ARG ASP PHE LEU LEU GLY HIS MET ASN ILE LEU SEQRES 20 A 296 GLY ALA VAL ILE PHE ASN GLU ILE PRO GLY ALA PHE SER SEQRES 21 A 296 ASP ALA CYS ASN LYS ALA ILE GLU PHE GLY LYS PRO ARG SEQRES 22 A 296 LEU MET ARG ASP ASP TRP ILE LYS VAL PHE ASP ARG GLU SEQRES 23 A 296 GLU ILE ALA GLU SER ILE ARG ARG ILE THR HET NAD A 301 44 HET CA A 302 1 HET ZN A 303 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 CA CA 2+ FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *134(H2 O) HELIX 1 AA1 GLY A 12 LEU A 23 1 12 HELIX 2 AA2 SER A 35 GLY A 47 1 13 HELIX 3 AA3 SER A 52 ASP A 58 1 7 HELIX 4 AA4 PRO A 68 THR A 70 5 3 HELIX 5 AA5 ILE A 71 ALA A 80 1 10 HELIX 6 AA6 PRO A 81 LEU A 83 5 3 HELIX 7 AA7 ALA A 94 ALA A 99 1 6 HELIX 8 AA8 ASP A 126 ARG A 131 1 6 HELIX 9 AA9 GLU A 152 TYR A 166 1 15 HELIX 10 AB1 THR A 176 GLU A 184 1 9 HELIX 11 AB2 ILE A 191 ARG A 209 1 19 HELIX 12 AB3 PRO A 212 PHE A 232 1 21 HELIX 13 AB4 SER A 240 MET A 255 1 16 HELIX 14 AB5 ASP A 258 PHE A 263 5 6 HELIX 15 AB6 ASP A 264 ARG A 274 1 11 SHEET 1 AA1 7 ARG A 28 VAL A 32 0 SHEET 2 AA1 7 LYS A 4 PHE A 8 1 N LEU A 7 O VAL A 32 SHEET 3 AA1 7 VAL A 62 LEU A 65 1 O ILE A 64 N ALA A 6 SHEET 4 AA1 7 MET A 88 THR A 91 1 O MET A 90 N VAL A 63 SHEET 5 AA1 7 THR A 109 HIS A 117 1 O THR A 109 N VAL A 89 SHEET 6 AA1 7 GLN A 141 GLN A 149 -1 O SER A 142 N CYS A 116 SHEET 7 AA1 7 ILE A 169 ARG A 174 1 O TYR A 173 N ILE A 143 LINK OD2 ASP A 93 CA CA A 302 1555 1555 2.36 LINK NE2 HIS A 114 ZN ZN A 303 1555 1555 2.16 LINK OE2 GLU A 184 CA CA A 302 1555 1555 2.32 LINK OE1 GLU A 184 ZN ZN A 303 1555 1555 2.05 LINK NE2 HIS A 223 ZN ZN A 303 1555 2455 2.19 LINK CA CA A 302 O HOH A 405 1555 1555 2.36 LINK CA CA A 302 O HOH A 412 1555 1555 2.36 LINK CA CA A 302 O HOH A 426 1555 1555 3.16 LINK CA CA A 302 O HOH A 464 1555 1555 2.33 LINK CA CA A 302 O HOH A 501 1555 1555 2.47 LINK ZN ZN A 303 O HOH A 520 1555 2455 1.88 CISPEP 1 ALA A 167 PRO A 168 0 3.79 CISPEP 2 GLU A 184 PRO A 185 0 14.10 SITE 1 AC1 25 GLY A 9 GLY A 11 GLY A 12 LYS A 13 SITE 2 AC1 25 MET A 14 GLU A 33 VAL A 34 ALA A 66 SITE 3 AC1 25 VAL A 67 PRO A 68 ASP A 69 ILE A 71 SITE 4 AC1 25 ILE A 75 LEU A 92 ASP A 93 HIS A 114 SITE 5 AC1 25 PHE A 134 HOH A 419 HOH A 424 HOH A 427 SITE 6 AC1 25 HOH A 435 HOH A 437 HOH A 464 HOH A 487 SITE 7 AC1 25 HOH A 495 SITE 1 AC2 6 ASP A 93 GLU A 184 HOH A 405 HOH A 412 SITE 2 AC2 6 HOH A 464 HOH A 501 SITE 1 AC3 4 HIS A 114 GLU A 184 HIS A 223 HOH A 520 CRYST1 87.903 71.140 47.649 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020987 0.00000