HEADER RNA 30-AUG-16 5T5A TITLE CRYSTAL STRUCTURE OF THE TWISTER SISTER (TS) RIBOZYME AT 2.0 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA/RNA (71-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: METAGENOME; SOURCE 4 ORGANISM_TAXID: 256318 KEYWDS RNA JUNCTION CATALYSIS, RNA EXPDTA X-RAY DIFFRACTION AUTHOR D.M.J.LILLEY,Y.LIU,T.J.WILSON REVDAT 4 08-MAY-24 5T5A 1 LINK REVDAT 3 26-APR-17 5T5A 1 JRNL REVDAT 2 15-MAR-17 5T5A 1 JRNL REVDAT 1 08-MAR-17 5T5A 0 JRNL AUTH Y.LIU,T.J.WILSON,D.M.LILLEY JRNL TITL THE STRUCTURE OF A NUCLEOLYTIC RIBOZYME THAT EMPLOYS A JRNL TITL 2 CATALYTIC METAL ION. JRNL REF NAT. CHEM. BIOL. V. 13 508 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28263963 JRNL DOI 10.1038/NCHEMBIO.2333 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 22488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1711 - 3.9989 1.00 2731 138 0.1258 0.1485 REMARK 3 2 3.9989 - 3.1746 1.00 2773 142 0.1380 0.2035 REMARK 3 3 3.1746 - 2.7735 1.00 2697 166 0.1919 0.2354 REMARK 3 4 2.7735 - 2.5199 1.00 2760 127 0.2190 0.3000 REMARK 3 5 2.5199 - 2.3394 1.00 2777 126 0.2137 0.2700 REMARK 3 6 2.3394 - 2.2015 1.00 2714 144 0.2148 0.2793 REMARK 3 7 2.2015 - 2.0912 0.97 2682 124 0.2073 0.2425 REMARK 3 8 2.0912 - 2.0002 0.83 2273 114 0.2206 0.2660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1516 REMARK 3 ANGLE : 1.987 2379 REMARK 3 CHIRALITY : 0.090 307 REMARK 3 PLANARITY : 0.018 62 REMARK 3 DIHEDRAL : 12.335 718 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 16.2382 18.6981 85.0628 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.2028 REMARK 3 T33: 0.2159 T12: -0.0105 REMARK 3 T13: -0.0108 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.1081 L22: 0.7671 REMARK 3 L33: 0.2360 L12: -0.0411 REMARK 3 L13: -0.2341 L23: -0.2281 REMARK 3 S TENSOR REMARK 3 S11: -0.0337 S12: 0.0553 S13: 0.0511 REMARK 3 S21: 0.0263 S22: 0.0414 S23: 0.0190 REMARK 3 S31: -0.0337 S32: -0.0744 S33: -0.0106 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91772 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 268378 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 37.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 21.10 REMARK 200 R MERGE (I) : 0.07359 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37580 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX (1.10.1_2155: ???) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM ACETATE SODIUM CACODYLATE REMARK 280 MPD, PH 6.0, EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.20650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 19.65200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 19.65200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.10325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 19.65200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 19.65200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 171.30975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 19.65200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 19.65200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.10325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 19.65200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 19.65200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 171.30975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 114.20650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G A 41 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 11 N7 G A 11 C8 0.039 REMARK 500 G A 30 C5 G A 30 N7 0.040 REMARK 500 G A 31 C5 G A 31 N7 0.044 REMARK 500 DC A 54 C2 DC A 54 O2 -0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A A 3 OP1 - P - OP2 ANGL. DEV. = -9.3 DEGREES REMARK 500 G A 4 C5 - C6 - O6 ANGL. DEV. = -4.0 DEGREES REMARK 500 C A 7 N1 - C2 - O2 ANGL. DEV. = 4.8 DEGREES REMARK 500 C A 7 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 C A 7 C5 - C4 - N4 ANGL. DEV. = 4.3 DEGREES REMARK 500 C A 12 O5' - P - OP2 ANGL. DEV. = -5.6 DEGREES REMARK 500 C A 13 N1 - C2 - O2 ANGL. DEV. = -4.1 DEGREES REMARK 500 U A 17 O5' - P - OP1 ANGL. DEV. = 11.1 DEGREES REMARK 500 U A 17 O5' - P - OP2 ANGL. DEV. = -8.4 DEGREES REMARK 500 U A 17 C5' - C4' - O4' ANGL. DEV. = 8.4 DEGREES REMARK 500 C A 19 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 A A 33 O5' - P - OP2 ANGL. DEV. = -7.0 DEGREES REMARK 500 C A 38 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 G A 46 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 G A 51 C8 - N9 - C4 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 5 OP2 REMARK 620 2 C A 52 OP2 96.1 REMARK 620 3 HOH A 224 O 176.3 86.1 REMARK 620 4 HOH A 253 O 86.5 100.6 90.2 REMARK 620 5 HOH A 267 O 89.6 163.6 89.1 95.1 REMARK 620 6 HOH A 294 O 90.2 82.4 93.1 175.8 82.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 108 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 7 OP1 REMARK 620 2 C A 29 OP1 112.1 REMARK 620 3 G A 51 O6 87.7 151.2 REMARK 620 4 HOH A 240 O 93.8 98.5 100.8 REMARK 620 5 HOH A 310 O 160.7 84.1 73.5 94.1 REMARK 620 6 HOH A 318 O 75.8 88.9 75.6 169.0 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 9 OP2 REMARK 620 2 G A 10 OP2 95.3 REMARK 620 3 HOH A 226 O 89.0 101.3 REMARK 620 4 HOH A 259 O 92.1 164.8 92.0 REMARK 620 5 HOH A 279 O 89.6 82.1 176.3 84.7 REMARK 620 6 HOH A 281 O 177.6 82.4 92.1 90.0 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 27 OP2 REMARK 620 2 HOH A 210 O 89.2 REMARK 620 3 HOH A 260 O 85.5 89.9 REMARK 620 4 HOH A 311 O 89.1 91.2 174.5 REMARK 620 5 HOH A 312 O 174.5 85.6 96.0 89.5 REMARK 620 6 HOH A 315 O 91.3 179.3 90.7 88.2 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 28 OP1 REMARK 620 2 HOH A 217 O 95.0 REMARK 620 3 HOH A 222 O 88.3 175.9 REMARK 620 4 HOH A 236 O 93.3 88.3 93.9 REMARK 620 5 HOH A 272 O 173.1 88.7 87.8 92.6 REMARK 620 6 HOH A 300 O 84.3 90.3 87.7 177.0 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 109 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 28 O2 REMARK 620 2 G A 49 O6 175.5 REMARK 620 3 HOH A 219 O 78.4 97.6 REMARK 620 4 HOH A 225 O 92.5 85.1 85.7 REMARK 620 5 HOH A 257 O 97.1 87.1 172.1 101.1 REMARK 620 6 HOH A 271 O 79.5 102.1 82.6 167.0 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 54 O2 REMARK 620 2 HOH A 254 O 83.6 REMARK 620 3 HOH A 266 O 90.2 91.1 REMARK 620 4 HOH A 316 O 90.2 93.0 175.9 REMARK 620 5 HOH A 317 O 91.5 172.9 83.7 92.3 REMARK 620 6 HOH A 329 O 172.4 88.7 89.8 90.4 96.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 106 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 256 O REMARK 620 2 HOH A 263 O 175.9 REMARK 620 3 HOH A 273 O 95.6 87.7 REMARK 620 4 HOH A 326 O 90.7 87.0 88.6 REMARK 620 5 HOH A 330 O 88.9 93.6 89.4 177.9 REMARK 620 6 HOH A 334 O 89.1 87.7 174.7 93.8 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 107 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 202 O REMARK 620 2 HOH A 204 O 94.0 REMARK 620 3 HOH A 248 O 90.5 93.1 REMARK 620 4 HOH A 328 O 91.2 174.2 89.5 REMARK 620 5 HOH A 332 O 82.6 84.2 172.5 93.9 REMARK 620 6 HOH A 333 O 175.8 87.8 93.2 86.9 93.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 109 DBREF 5T5A A 1 62 PDB 5T5A 5T5A 1 62 SEQRES 1 A 62 G C A G G G C A A G G C C SEQRES 2 A 62 C A G U C C C G U G C A A SEQRES 3 A 62 G C C G G G A C C G CBV C CBV SEQRES 4 A 62 C G G G G C G C G G C G C SEQRES 5 A 62 U DC A U U C C U G C HET CBV A 37 21 HET CBV A 39 21 HET MG A 101 1 HET MG A 102 1 HET MG A 103 1 HET MG A 104 1 HET MG A 105 1 HET MG A 106 1 HET MG A 107 1 HET MG A 108 1 HET MG A 109 1 HETNAM CBV 5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM MG MAGNESIUM ION FORMUL 1 CBV 2(C9 H13 BR N3 O8 P) FORMUL 2 MG 9(MG 2+) FORMUL 11 HOH *134(H2 O) LINK O3' G A 36 P CBV A 37 1555 1555 1.60 LINK O3' CBV A 37 P C A 38 1555 1555 1.60 LINK O3' C A 38 P CBV A 39 1555 1555 1.61 LINK O3' CBV A 39 P C A 40 1555 1555 1.58 LINK OP2 G A 5 MG MG A 104 1555 1555 2.28 LINK OP1 C A 7 MG MG A 108 1555 1555 2.66 LINK OP2 A A 9 MG MG A 103 1555 1555 2.18 LINK OP2 G A 10 MG MG A 103 1555 1555 2.17 LINK OP2 G A 27 MG MG A 102 1555 1555 2.19 LINK OP1 C A 28 MG MG A 105 1555 1555 2.27 LINK O2 C A 28 MG MG A 109 1555 1555 2.54 LINK OP1 C A 29 MG MG A 108 1555 1555 2.47 LINK O6 G A 49 MG MG A 109 1555 1555 2.53 LINK O6 G A 51 MG MG A 108 1555 1555 2.54 LINK OP2 C A 52 MG MG A 104 1555 1555 2.28 LINK O2 DC A 54 MG MG A 101 1555 1555 2.26 LINK MG MG A 101 O HOH A 254 1555 1555 2.19 LINK MG MG A 101 O HOH A 266 1555 1555 2.17 LINK MG MG A 101 O HOH A 316 1555 1555 2.17 LINK MG MG A 101 O HOH A 317 1555 1555 2.15 LINK MG MG A 101 O HOH A 329 1555 1555 2.18 LINK MG MG A 102 O HOH A 210 1555 1555 2.14 LINK MG MG A 102 O HOH A 260 1555 1555 2.16 LINK MG MG A 102 O HOH A 311 1555 1555 2.19 LINK MG MG A 102 O HOH A 312 1555 1555 2.14 LINK MG MG A 102 O HOH A 315 1555 1555 2.18 LINK MG MG A 103 O HOH A 226 1555 1555 2.17 LINK MG MG A 103 O HOH A 259 1555 1555 2.17 LINK MG MG A 103 O HOH A 279 1555 1555 2.16 LINK MG MG A 103 O HOH A 281 1555 1555 2.16 LINK MG MG A 104 O HOH A 224 1555 1555 2.18 LINK MG MG A 104 O HOH A 253 1555 1555 2.18 LINK MG MG A 104 O HOH A 267 1555 1555 2.16 LINK MG MG A 104 O HOH A 294 1555 1555 2.15 LINK MG MG A 105 O HOH A 217 1555 1555 2.15 LINK MG MG A 105 O HOH A 222 1555 1555 2.17 LINK MG MG A 105 O HOH A 236 1555 1555 2.15 LINK MG MG A 105 O HOH A 272 1555 1555 2.15 LINK MG MG A 105 O HOH A 300 1555 1555 2.14 LINK MG MG A 106 O HOH A 256 1555 1555 2.21 LINK MG MG A 106 O HOH A 263 1555 1555 2.18 LINK MG MG A 106 O HOH A 273 1555 1555 2.20 LINK MG MG A 106 O HOH A 326 1555 1555 2.18 LINK MG MG A 106 O HOH A 330 1555 1555 2.17 LINK MG MG A 106 O HOH A 334 1555 1555 2.20 LINK MG MG A 107 O HOH A 202 1555 1555 2.17 LINK MG MG A 107 O HOH A 204 1555 1555 2.17 LINK MG MG A 107 O HOH A 248 1555 1555 2.22 LINK MG MG A 107 O HOH A 328 1555 1555 2.18 LINK MG MG A 107 O HOH A 332 1555 1555 2.18 LINK MG MG A 107 O HOH A 333 1555 1555 2.18 LINK MG MG A 108 O HOH A 240 1555 1555 2.52 LINK MG MG A 108 O HOH A 310 1555 1555 2.55 LINK MG MG A 108 O HOH A 318 1555 1555 2.65 LINK MG MG A 109 O HOH A 219 1555 1555 2.75 LINK MG MG A 109 O HOH A 225 1555 1555 2.40 LINK MG MG A 109 O HOH A 257 1555 1555 2.37 LINK MG MG A 109 O HOH A 271 1555 1555 2.57 SITE 1 AC1 6 DC A 54 HOH A 254 HOH A 266 HOH A 316 SITE 2 AC1 6 HOH A 317 HOH A 329 SITE 1 AC2 6 G A 27 HOH A 210 HOH A 260 HOH A 311 SITE 2 AC2 6 HOH A 312 HOH A 315 SITE 1 AC3 6 A A 9 G A 10 HOH A 226 HOH A 259 SITE 2 AC3 6 HOH A 279 HOH A 281 SITE 1 AC4 6 G A 5 C A 52 HOH A 224 HOH A 253 SITE 2 AC4 6 HOH A 267 HOH A 294 SITE 1 AC5 6 C A 28 HOH A 217 HOH A 222 HOH A 236 SITE 2 AC5 6 HOH A 272 HOH A 300 SITE 1 AC6 6 HOH A 256 HOH A 263 HOH A 273 HOH A 326 SITE 2 AC6 6 HOH A 330 HOH A 334 SITE 1 AC7 6 HOH A 202 HOH A 204 HOH A 248 HOH A 328 SITE 2 AC7 6 HOH A 332 HOH A 333 SITE 1 AC8 7 C A 7 C A 28 C A 29 G A 51 SITE 2 AC8 7 HOH A 240 HOH A 310 HOH A 318 SITE 1 AC9 6 C A 28 G A 49 HOH A 219 HOH A 225 SITE 2 AC9 6 HOH A 257 HOH A 271 CRYST1 39.304 39.304 228.413 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025443 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004378 0.00000