HEADER HYDROLASE 01-SEP-16 5T63 TITLE THE HHOA PROTEASE FROM SYNECHOCYSTIS SP. PCC 6803 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SERINE PROTEASE HHOA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALA-ALA-ALA-ALA; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: PEPTIDE FOUND IN THE ACTIVE SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803 SUBSTR. KAZUSA; SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 GENE: HHOA, SLL1679; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEASE, PDZ DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.PERSSON,M.HALL,C.FUNK REVDAT 4 17-JAN-24 5T63 1 LINK REVDAT 3 13-SEP-17 5T63 1 REMARK REVDAT 2 14-JUN-17 5T63 1 JRNL REVDAT 1 25-JAN-17 5T63 0 JRNL AUTH M.HALL,R.WAGNER,X.T.LAM,C.FUNK,K.PERSSON JRNL TITL THE HHOA PROTEASE FROM SYNECHOCYSTIS SP. PCC 6803 - NOVEL JRNL TITL 2 INSIGHTS INTO STRUCTURE AND ACTIVITY REGULATION. JRNL REF J. STRUCT. BIOL. V. 198 147 2017 JRNL REFN ESSN 1095-8657 JRNL PMID 27956128 JRNL DOI 10.1016/J.JSB.2016.12.004 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.5731 - 4.2743 1.00 2731 137 0.1775 0.2004 REMARK 3 2 4.2743 - 3.3929 1.00 2666 125 0.2102 0.2873 REMARK 3 3 3.3929 - 2.9640 1.00 2639 124 0.2700 0.3377 REMARK 3 4 2.9640 - 2.6930 1.00 2624 140 0.3041 0.3351 REMARK 3 5 2.6930 - 2.5000 1.00 2622 129 0.3452 0.3740 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2108 REMARK 3 ANGLE : 1.247 2868 REMARK 3 CHIRALITY : 0.066 354 REMARK 3 PLANARITY : 0.007 382 REMARK 3 DIHEDRAL : 13.746 767 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1403 19.1901 -31.2646 REMARK 3 T TENSOR REMARK 3 T11: 0.5394 T22: 0.4116 REMARK 3 T33: 0.6725 T12: 0.0010 REMARK 3 T13: 0.1309 T23: 0.2286 REMARK 3 L TENSOR REMARK 3 L11: 8.2026 L22: 8.2416 REMARK 3 L33: 2.5625 L12: 0.7547 REMARK 3 L13: -0.5953 L23: 0.8445 REMARK 3 S TENSOR REMARK 3 S11: 0.5197 S12: 0.6052 S13: 1.0117 REMARK 3 S21: 0.4275 S22: -0.1513 S23: 0.1191 REMARK 3 S31: -0.4514 S32: 0.0703 S33: -0.2550 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 390 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.5342 8.4597 -13.4462 REMARK 3 T TENSOR REMARK 3 T11: 1.0744 T22: 0.6080 REMARK 3 T33: 0.6607 T12: -0.3438 REMARK 3 T13: -0.0131 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.6446 L22: 8.9335 REMARK 3 L33: 4.4630 L12: 1.3454 REMARK 3 L13: -0.6445 L23: -6.4777 REMARK 3 S TENSOR REMARK 3 S11: -0.5694 S12: 0.4207 S13: 0.5053 REMARK 3 S21: -2.4611 S22: 1.5539 S23: 0.5600 REMARK 3 S31: 1.4781 S32: -1.1520 S33: -0.6529 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5092 8.3864 -16.0381 REMARK 3 T TENSOR REMARK 3 T11: 0.8271 T22: -0.7428 REMARK 3 T33: 0.9412 T12: -0.6819 REMARK 3 T13: 0.8454 T23: 0.5273 REMARK 3 L TENSOR REMARK 3 L11: 2.5291 L22: 2.5611 REMARK 3 L33: 0.5964 L12: 1.3051 REMARK 3 L13: -0.6943 L23: -0.1269 REMARK 3 S TENSOR REMARK 3 S11: -0.7727 S12: 0.4847 S13: -0.3457 REMARK 3 S21: -0.7375 S22: -0.0556 S23: -1.4596 REMARK 3 S31: 0.9233 S32: 0.2851 S33: 0.5331 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13940 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 51.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.71500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3PV3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA-ACETATE PH5.0, 0.2 M MGCL2, 30% REMARK 280 PENTAERYTHRIOL PROPOXYLATE (17/8), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 67.11400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.74829 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.35433 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 67.11400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.74829 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.35433 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 67.11400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.74829 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 38.35433 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 67.11400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 38.74829 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.35433 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 67.11400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 38.74829 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.35433 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 67.11400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 38.74829 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.35433 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 77.49657 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 76.70867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 77.49657 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 76.70867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 77.49657 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 76.70867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 77.49657 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 76.70867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 77.49657 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 76.70867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 77.49657 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 76.70867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 539 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 28 REMARK 465 ILE A 29 REMARK 465 ASP A 30 REMARK 465 PRO A 31 REMARK 465 PHE A 32 REMARK 465 THR A 33 REMARK 465 MET A 34 REMARK 465 ALA A 35 REMARK 465 ASP A 36 REMARK 465 ASP A 37 REMARK 465 LEU A 38 REMARK 465 PRO A 39 REMARK 465 PRO A 40 REMARK 465 ALA A 41 REMARK 465 PRO A 42 REMARK 465 VAL A 43 REMARK 465 ILE A 44 REMARK 465 THR A 45 REMARK 465 ALA A 46 REMARK 465 GLN A 47 REMARK 465 ALA A 48 REMARK 465 SER A 49 REMARK 465 VAL A 50 REMARK 465 PRO A 51 REMARK 465 LEU A 52 REMARK 465 THR A 53 REMARK 465 THR A 76 REMARK 465 VAL A 77 REMARK 465 VAL A 78 REMARK 465 THR A 79 REMARK 465 ARG A 80 REMARK 465 ARG A 81 REMARK 465 THR A 82 REMARK 465 ASP A 83 REMARK 465 PRO A 84 REMARK 465 ILE A 85 REMARK 465 LEU A 86 REMARK 465 ASP A 87 REMARK 465 ASP A 88 REMARK 465 PRO A 89 REMARK 465 PHE A 90 REMARK 465 PHE A 91 REMARK 465 GLN A 92 REMARK 465 GLU A 93 REMARK 465 PHE A 94 REMARK 465 PHE A 95 REMARK 465 GLY A 96 REMARK 465 ARG A 97 REMARK 465 SER A 98 REMARK 465 PHE A 99 REMARK 465 PRO A 100 REMARK 465 VAL A 101 REMARK 465 PRO A 102 REMARK 465 PRO A 103 REMARK 465 ARG A 104 REMARK 465 GLU A 105 REMARK 465 ARG A 106 REMARK 465 ARG A 107 REMARK 465 ILE A 108 REMARK 465 ALA A 109 REMARK 465 GLY A 110 REMARK 465 ARG A 211 REMARK 465 SER A 212 REMARK 465 ALA A 213 REMARK 465 ALA A 214 REMARK 465 GLN A 215 REMARK 465 ALA A 216 REMARK 465 GLY A 217 REMARK 465 ILE A 218 REMARK 465 PRO A 219 REMARK 465 ASP A 220 REMARK 465 LYS A 221 REMARK 465 ARG A 222 REMARK 465 VAL A 223 REMARK 465 ARG A 256 REMARK 465 ALA A 257 REMARK 465 ASP A 258 REMARK 465 ALA A 259 REMARK 465 GLY A 376 REMARK 465 ASP A 377 REMARK 465 ASN A 391 REMARK 465 PRO A 392 REMARK 465 THR A 393 REMARK 465 SER A 394 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 347 O HOH A 501 2.15 REMARK 500 O ASP A 318 O HOH A 502 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG2 THR A 348 NE ARG A 379 18444 1.99 REMARK 500 CG2 THR A 348 NH2 ARG A 379 18444 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 131 -155.80 63.97 REMARK 500 PRO A 166 50.85 -69.30 REMARK 500 SER A 180 5.93 -69.57 REMARK 500 PRO A 315 33.42 -67.24 REMARK 500 SER A 351 11.36 -147.82 REMARK 500 LEU A 380 125.23 -170.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 151 GLY A 152 133.23 REMARK 500 GLY A 152 THR A 153 -147.18 REMARK 500 VAL A 345 ASP A 346 -136.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 523 O REMARK 620 2 HOH A 523 O 84.7 REMARK 620 3 HOH A 537 O 91.4 96.3 REMARK 620 4 HOH A 537 O 176.2 91.5 88.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 DBREF 5T63 A 35 394 UNP P72780 HHOA_SYNY3 35 394 DBREF 5T63 C 1 4 PDB 5T63 5T63 1 4 SEQADV 5T63 GLY A 28 UNP P72780 EXPRESSION TAG SEQADV 5T63 ILE A 29 UNP P72780 EXPRESSION TAG SEQADV 5T63 ASP A 30 UNP P72780 EXPRESSION TAG SEQADV 5T63 PRO A 31 UNP P72780 EXPRESSION TAG SEQADV 5T63 PHE A 32 UNP P72780 EXPRESSION TAG SEQADV 5T63 THR A 33 UNP P72780 EXPRESSION TAG SEQADV 5T63 MET A 34 UNP P72780 EXPRESSION TAG SEQRES 1 A 367 GLY ILE ASP PRO PHE THR MET ALA ASP ASP LEU PRO PRO SEQRES 2 A 367 ALA PRO VAL ILE THR ALA GLN ALA SER VAL PRO LEU THR SEQRES 3 A 367 SER GLU SER PHE VAL ALA ALA ALA VAL SER ARG SER GLY SEQRES 4 A 367 PRO ALA VAL VAL ARG ILE ASP THR GLU THR VAL VAL THR SEQRES 5 A 367 ARG ARG THR ASP PRO ILE LEU ASP ASP PRO PHE PHE GLN SEQRES 6 A 367 GLU PHE PHE GLY ARG SER PHE PRO VAL PRO PRO ARG GLU SEQRES 7 A 367 ARG ARG ILE ALA GLY GLN GLY SER GLY PHE ILE ILE ASP SEQRES 8 A 367 ASN SER GLY ILE ILE LEU THR ASN ALA HIS VAL VAL ASP SEQRES 9 A 367 GLY ALA SER LYS VAL VAL VAL THR LEU ARG ASP GLY ARG SEQRES 10 A 367 THR PHE ASP GLY GLN VAL ARG GLY THR ASP GLU VAL THR SEQRES 11 A 367 ASP LEU ALA VAL VAL LYS ILE GLU PRO GLN GLY SER ALA SEQRES 12 A 367 LEU PRO VAL ALA PRO LEU GLY THR SER SER ASN LEU GLN SEQRES 13 A 367 VAL GLY ASP TRP ALA ILE ALA VAL GLY ASN PRO VAL GLY SEQRES 14 A 367 LEU ASP ASN THR VAL THR LEU GLY ILE ILE SER THR LEU SEQRES 15 A 367 GLY ARG SER ALA ALA GLN ALA GLY ILE PRO ASP LYS ARG SEQRES 16 A 367 VAL GLU PHE ILE GLN THR ASP ALA ALA ILE ASN PRO GLY SEQRES 17 A 367 ASN SER GLY GLY PRO LEU LEU ASN ALA ARG GLY GLU VAL SEQRES 18 A 367 ILE GLY ILE ASN THR ALA ILE ARG ALA ASP ALA THR GLY SEQRES 19 A 367 ILE GLY PHE ALA ILE PRO ILE ASP GLN ALA LYS ALA ILE SEQRES 20 A 367 GLN ASN THR LEU ALA ALA GLY GLY THR VAL PRO HIS PRO SEQRES 21 A 367 TYR ILE GLY VAL GLN MET MET ASN ILE THR VAL ASP GLN SEQRES 22 A 367 ALA GLN GLN ASN ASN ARG ASN PRO ASN SER PRO PHE ILE SEQRES 23 A 367 ILE PRO GLU VAL ASP GLY ILE LEU VAL MET ARG VAL LEU SEQRES 24 A 367 PRO GLY THR PRO ALA GLU ARG ALA GLY ILE ARG ARG GLY SEQRES 25 A 367 ASP VAL ILE VAL ALA VAL ASP GLY THR PRO ILE SER ASP SEQRES 26 A 367 GLY ALA ARG LEU GLN ARG ILE VAL GLU GLN ALA GLY LEU SEQRES 27 A 367 ASN LYS ALA LEU LYS LEU ASP LEU LEU ARG GLY ASP ARG SEQRES 28 A 367 ARG LEU SER LEU THR VAL GLN THR ALA GLN LEU ARG ASN SEQRES 29 A 367 PRO THR SER SEQRES 1 C 4 ALA ALA ALA ALA HET MG A 401 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *39(H2 O) HELIX 1 AA1 SER A 56 GLY A 66 1 11 HELIX 2 AA2 ASN A 126 ASP A 131 1 6 HELIX 3 AA3 THR A 178 LEU A 182 5 5 HELIX 4 AA4 ILE A 268 ALA A 280 1 13 HELIX 5 AA5 THR A 297 ASN A 307 1 11 HELIX 6 AA6 THR A 329 ALA A 334 1 6 HELIX 7 AA7 ASP A 352 GLY A 364 1 13 SHEET 1 AA1 7 VAL A 69 ASP A 73 0 SHEET 2 AA1 7 GLY A 112 ASP A 118 -1 O GLY A 112 N ILE A 72 SHEET 3 AA1 7 ILE A 122 THR A 125 -1 O ILE A 122 N ILE A 117 SHEET 4 AA1 7 LEU A 159 ILE A 164 -1 O VAL A 162 N ILE A 123 SHEET 5 AA1 7 THR A 145 ASP A 154 -1 N ASP A 154 O LEU A 159 SHEET 6 AA1 7 LYS A 135 THR A 139 -1 N VAL A 136 O GLY A 148 SHEET 7 AA1 7 VAL A 69 ASP A 73 -1 N ASP A 73 O VAL A 137 SHEET 1 AA2 7 TRP A 187 GLY A 192 0 SHEET 2 AA2 7 THR A 200 THR A 208 -1 O GLY A 204 N ALA A 188 SHEET 3 AA2 7 ILE A 226 THR A 228 -1 O GLN A 227 N SER A 207 SHEET 4 AA2 7 GLY A 263 PRO A 267 -1 O GLY A 263 N THR A 228 SHEET 5 AA2 7 VAL A 248 THR A 253 -1 N ILE A 251 O ILE A 266 SHEET 6 AA2 7 PRO A 240 LEU A 242 -1 N LEU A 241 O ILE A 249 SHEET 7 AA2 7 TRP A 187 GLY A 192 -1 N ILE A 189 O LEU A 242 SHEET 1 AA3 2 PRO A 287 TYR A 288 0 SHEET 2 AA3 2 ALA A 387 GLN A 388 -1 O ALA A 387 N TYR A 288 SHEET 1 AA4 6 LEU A 380 GLN A 385 0 SHEET 2 AA4 6 ALA A 368 LEU A 374 -1 N LEU A 373 O LEU A 380 SHEET 3 AA4 6 VAL A 341 VAL A 345 -1 N VAL A 343 O ASP A 372 SHEET 4 AA4 6 GLY A 319 VAL A 325 -1 N ILE A 320 O ILE A 342 SHEET 5 AA4 6 VAL A 291 ILE A 296 -1 N MET A 294 O LEU A 321 SHEET 6 AA4 6 ALA C 2 ALA C 4 -1 O ALA C 2 N MET A 293 LINK MG MG A 401 O HOH A 523 1555 1555 2.25 LINK MG MG A 401 O HOH A 523 1555 2555 2.24 LINK MG MG A 401 O HOH A 537 1555 1555 2.27 LINK MG MG A 401 O HOH A 537 1555 2555 2.27 SITE 1 AC1 2 HOH A 523 HOH A 537 CRYST1 134.228 134.228 115.063 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007450 0.004301 0.000000 0.00000 SCALE2 0.000000 0.008603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008691 0.00000