HEADER TRANSFERASE 01-SEP-16 5T6C TITLE CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS N-MYRISTOYL TRANSFERASE IN TITLE 2 COMPLEX WITH MYRISTOYL COA AND A DICHLORO-METHYLPYRIDINYL-METHOXY- TITLE 3 PHENYL-PYRIDINE PIPERAZINE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE,NMT,PEPTIDE N- COMPND 5 MYRISTOYLTRANSFERASE; COMPND 6 EC: 2.3.1.97; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEOSARTORYA FUMIGATA (STRAIN ATCC MYA-4609 / SOURCE 3 AF293 / CBS 101355 / FGSC A1100); SOURCE 4 ORGANISM_TAXID: 330879; SOURCE 5 STRAIN: ATCC MYA-4609 / AF293 / CBS 101355 / FGSC A1100; SOURCE 6 GENE: NMT1, AFUA_4G08070; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS ACYLTRANSFERASE, TRANSFERASE, DRUG DISCOVERY EXPDTA X-RAY DIFFRACTION AUTHOR D.A.ROBINSON,P.G.WYATT REVDAT 5 17-JAN-24 5T6C 1 REMARK REVDAT 4 12-JUN-19 5T6C 1 AUTHOR REVDAT 3 27-DEC-17 5T6C 1 JRNL REVDAT 2 22-NOV-17 5T6C 1 JRNL REVDAT 1 13-SEP-17 5T6C 0 JRNL AUTH T.BAYLISS,D.A.ROBINSON,V.C.SMITH,S.BRAND,S.P.MCELROY, JRNL AUTH 2 L.S.TORRIE,C.MPAMHANGA,S.NORVAL,L.STOJANOVSKI,R.BRENK, JRNL AUTH 3 J.A.FREARSON,K.D.READ,I.H.GILBERT,P.G.WYATT JRNL TITL DESIGN AND SYNTHESIS OF BRAIN PENETRANT TRYPANOCIDAL JRNL TITL 2 N-MYRISTOYLTRANSFERASE INHIBITORS. JRNL REF J. MED. CHEM. V. 60 9790 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 29125744 JRNL DOI 10.1021/ACS.JMEDCHEM.7B01255 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 34332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1802 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2397 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.5830 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.5760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 502 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.111 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3369 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3199 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4585 ; 2.091 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7334 ; 1.619 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 391 ; 7.832 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;37.068 ;23.510 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;15.803 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.156 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3700 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 776 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1567 ; 1.434 ; 1.495 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1566 ; 1.434 ; 1.495 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1957 ; 2.148 ; 2.237 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1958 ; 2.148 ; 2.237 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1802 ; 1.960 ; 1.644 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1803 ; 1.960 ; 1.644 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2629 ; 2.924 ; 2.404 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4342 ; 5.813 ;13.745 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4103 ; 5.554 ;13.174 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5T6C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36493 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 38.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4CAX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%PEG3350,0.2M NACL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.57150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.07300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.29950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.07300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.57150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.29950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 ARG A 84 REMARK 465 SER A 85 REMARK 465 GLN A 86 REMARK 465 THR A 87 REMARK 465 GLN A 88 REMARK 465 PRO A 89 REMARK 465 VAL A 90 REMARK 465 PRO A 91 REMARK 465 ARG A 92 REMARK 465 PHE A 93 REMARK 465 ASP A 94 REMARK 465 GLU A 95 REMARK 465 THR A 96 REMARK 465 SER A 97 REMARK 465 THR A 98 REMARK 465 ASP A 99 REMARK 465 THR A 100 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 382 CG CD OE1 NE2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 ASN A 406 CG OD1 ND2 REMARK 470 LYS A 408 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB THR A 401 O HOH A 604 1.88 REMARK 500 N ALA A 250 O HOH A 601 1.92 REMARK 500 O HOH A 638 O HOH A 795 1.93 REMARK 500 O HOH A 805 O HOH A 1073 1.94 REMARK 500 CE1 TYR A 323 O HOH A 608 1.94 REMARK 500 CG LEU A 376 O HOH A 1008 1.96 REMARK 500 CG2 VAL A 354 O HOH A 965 1.96 REMARK 500 O HOH A 632 O HOH A 644 2.02 REMARK 500 CB THR A 286 O HOH A 957 2.06 REMARK 500 N VAL A 252 O HOH A 602 2.08 REMARK 500 O HOH A 639 O HOH A 788 2.09 REMARK 500 O HOH A 779 O HOH A 861 2.09 REMARK 500 O SER A 298 O HOH A 603 2.11 REMARK 500 OG1 THR A 401 O HOH A 604 2.14 REMARK 500 O HOH A 969 O HOH A 1065 2.15 REMARK 500 O HOH A 899 O HOH A 968 2.15 REMARK 500 CB PRO A 257 O HOH A 909 2.15 REMARK 500 O HOH A 894 O HOH A 992 2.15 REMARK 500 O VAL A 252 O HOH A 602 2.16 REMARK 500 OD1 ASN A 132 OG1 THR A 134 2.17 REMARK 500 O HOH A 801 O HOH A 814 2.17 REMARK 500 CG MET A 407 O HOH A 1028 2.18 REMARK 500 O HOH A 846 O HOH A 1068 2.19 REMARK 500 CE2 TYR A 395 O HOH A 752 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 133 CD GLU A 133 OE2 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 203 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 LEU A 207 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 ALA A 283 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 ARG A 289 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 326 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 413 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 413 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 483 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 483 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 204 26.61 47.99 REMARK 500 HIS A 218 130.15 -37.85 REMARK 500 ALA A 283 -81.76 105.11 REMARK 500 SER A 285 -166.97 -106.92 REMARK 500 GLN A 382 71.73 -151.54 REMARK 500 TYR A 395 -122.33 -115.60 REMARK 500 ASN A 405 25.97 39.43 REMARK 500 HIS A 439 -137.09 46.25 REMARK 500 MET A 484 -161.73 -101.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 282 ALA A 283 71.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1102 DISTANCE = 5.94 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 75S A 502 DBREF 5T6C A 86 492 UNP Q9UVX3 NMT_ASPFU 86 492 SEQADV 5T6C GLY A 82 UNP Q9UVX3 EXPRESSION TAG SEQADV 5T6C PRO A 83 UNP Q9UVX3 EXPRESSION TAG SEQADV 5T6C ARG A 84 UNP Q9UVX3 EXPRESSION TAG SEQADV 5T6C SER A 85 UNP Q9UVX3 EXPRESSION TAG SEQRES 1 A 411 GLY PRO ARG SER GLN THR GLN PRO VAL PRO ARG PHE ASP SEQRES 2 A 411 GLU THR SER THR ASP THR GLY GLY PRO ILE LYS ILE ILE SEQRES 3 A 411 ASP PRO GLU LYS VAL SER LYS GLU PRO ASP ALA LEU LEU SEQRES 4 A 411 GLU GLY PHE GLU TRP ALA THR LEU ASP LEU THR ASN GLU SEQRES 5 A 411 THR GLU LEU GLN GLU LEU TRP ASP LEU LEU THR TYR HIS SEQRES 6 A 411 TYR VAL GLU ASP ASP ASN ALA MET PHE ARG PHE ARG TYR SEQRES 7 A 411 SER GLN SER PHE LEU HIS TRP ALA LEU MET SER PRO GLY SEQRES 8 A 411 TRP LYS LYS GLU TRP HIS VAL GLY VAL ARG ALA THR LYS SEQRES 9 A 411 SER ARG LYS LEU VAL ALA SER ILE CYS GLY VAL PRO THR SEQRES 10 A 411 GLU ILE ASN VAL ARG ASN GLN LYS LEU LYS VAL VAL GLU SEQRES 11 A 411 ILE ASN PHE LEU CYS ILE HIS LYS LYS LEU ARG SER LYS SEQRES 12 A 411 ARG LEU THR PRO VAL LEU ILE LYS GLU ILE THR ARG ARG SEQRES 13 A 411 CYS TYR LEU ASN GLY ILE TYR GLN ALA ILE TYR THR ALA SEQRES 14 A 411 GLY VAL VAL LEU PRO THR PRO VAL SER SER CYS ARG TYR SEQRES 15 A 411 TYR HIS ARG PRO LEU ASP TRP LEU LYS LEU TYR GLU VAL SEQRES 16 A 411 GLY PHE SER PRO LEU PRO ALA GLY SER THR LYS ALA ARG SEQRES 17 A 411 GLN ILE THR LYS ASN HIS LEU PRO SER THR THR SER THR SEQRES 18 A 411 PRO GLY LEU ARG PRO MET GLU PRO LYS ASP ILE ASP THR SEQRES 19 A 411 VAL HIS ASP LEU LEU GLN ARG TYR LEU SER ARG PHE ALA SEQRES 20 A 411 LEU ASN GLN ALA PHE THR ARG GLU GLU VAL ASP HIS TRP SEQRES 21 A 411 LEU VAL HIS LYS PRO GLU THR VAL LYS GLU GLN VAL VAL SEQRES 22 A 411 TRP ALA TYR VAL VAL GLU ASP PRO GLU THR HIS LYS ILE SEQRES 23 A 411 THR ASP PHE PHE SER PHE TYR ASN LEU GLU SER THR VAL SEQRES 24 A 411 ILE GLN ASN PRO LYS HIS ASP ASN VAL ARG ALA ALA TYR SEQRES 25 A 411 LEU TYR TYR TYR ALA THR GLU THR ALA PHE THR ASN ASN SEQRES 26 A 411 MET LYS ALA LEU LYS GLU ARG LEU LEU MET LEU MET ASN SEQRES 27 A 411 ASP ALA LEU ILE LEU ALA LYS LYS ALA HIS PHE ASP VAL SEQRES 28 A 411 PHE ASN ALA LEU THR LEU HIS ASP ASN PRO LEU PHE LEU SEQRES 29 A 411 GLU GLN LEU LYS PHE GLY ALA GLY ASP GLY GLN LEU HIS SEQRES 30 A 411 PHE TYR LEU TYR ASN TYR ARG THR ALA PRO VAL PRO GLY SEQRES 31 A 411 GLY VAL ASN GLU LYS ASN LEU PRO ASP GLU LYS ARG MET SEQRES 32 A 411 GLY GLY VAL GLY ILE VAL MET LEU HET MYA A 501 63 HET 75S A 502 29 HETNAM MYA TETRADECANOYL-COA HETNAM 75S 1-(4-{3,5-DICHLORO-4-[(2-METHYLPYRIDIN-3-YL) HETNAM 2 75S METHOXY]PHENYL}PYRIDIN-2-YL)PIPERAZINE HETSYN MYA MYRISTOYL-COA FORMUL 2 MYA C35 H62 N7 O17 P3 S FORMUL 3 75S C22 H22 CL2 N4 O FORMUL 4 HOH *502(H2 O) HELIX 1 AA1 ASP A 108 VAL A 112 5 5 HELIX 2 AA2 ASN A 132 TYR A 147 1 16 HELIX 3 AA3 SER A 160 MET A 169 1 10 HELIX 4 AA4 LYS A 174 GLU A 176 5 3 HELIX 5 AA5 LYS A 219 ARG A 222 5 4 HELIX 6 AA6 ARG A 225 LEU A 240 1 16 HELIX 7 AA7 ASP A 269 VAL A 276 1 8 HELIX 8 AA8 THR A 286 HIS A 295 1 10 HELIX 9 AA9 GLU A 309 LYS A 311 5 3 HELIX 10 AB1 ASP A 312 SER A 325 1 14 HELIX 11 AB2 THR A 334 VAL A 343 1 10 HELIX 12 AB3 THR A 401 ASN A 405 5 5 HELIX 13 AB4 ASN A 406 ALA A 428 1 23 HELIX 14 AB5 ASP A 440 PHE A 444 5 5 HELIX 15 AB6 ASP A 480 MET A 484 5 5 SHEET 1 A 4 PHE A 123 THR A 127 0 SHEET 2 A 4 HIS A 178 ALA A 183 -1 SHEET 3 A 4 LEU A 189 VAL A 202 -1 SHEET 4 A 4 GLN A 205 ASN A 213 -1 SHEET 1 B 5 PHE A 155 ARG A 158 0 SHEET 2 B 5 PHE A 373 VAL A 380 -1 SHEET 3 B 5 ASN A 388 LEU A 394 -1 SHEET 4 B 5 VAL A 432 LEU A 436 1 SHEET 5 B 5 TYR A 263 PRO A 267 -1 SHEET 1 C 2 ILE A 200 VAL A 202 0 SHEET 2 C 2 LEU A 329 GLN A 331 -1 SHEET 1 D 3 ALA A 246 ALA A 250 0 SHEET 2 D 3 GLN A 456 TYR A 462 -1 SHEET 3 D 3 SER A 259 ARG A 262 -1 SHEET 1 E 3 LEU A 305 PRO A 307 0 SHEET 2 E 3 VAL A 354 GLU A 360 -1 SHEET 3 E 3 ILE A 367 TYR A 374 -1 SITE 1 AC1 31 HIS A 146 TYR A 147 VAL A 148 ILE A 212 SITE 2 AC1 31 ASN A 213 PHE A 214 LEU A 215 CYS A 216 SITE 3 AC1 31 ILE A 217 ARG A 222 SER A 223 LYS A 224 SITE 4 AC1 31 ARG A 225 LEU A 226 THR A 227 ILE A 231 SITE 5 AC1 31 THR A 235 TYR A 244 TYR A 248 THR A 249 SITE 6 AC1 31 LEU A 254 TYR A 462 HOH A 643 HOH A 714 SITE 7 AC1 31 HOH A 743 HOH A 780 HOH A 818 HOH A 835 SITE 8 AC1 31 HOH A 850 HOH A 880 HOH A 899 SITE 1 AC2 20 VAL A 148 ASP A 150 PHE A 155 PHE A 157 SITE 2 AC2 20 TYR A 159 THR A 249 GLY A 251 TYR A 263 SITE 3 AC2 20 PHE A 278 SER A 378 TYR A 393 GLY A 455 SITE 4 AC2 20 GLN A 456 LEU A 457 LEU A 492 HOH A 699 SITE 5 AC2 20 HOH A 700 HOH A 746 HOH A 768 HOH A 967 CRYST1 51.143 58.599 152.146 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019553 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006573 0.00000