HEADER BIOSYNTHETIC PROTEIN 01-SEP-16 5T6O TITLE STRUCTURE OF THE CATALYTIC DOMAIN OF THE CLASS I POLYHYDROXYBUTYRATE TITLE 2 SYNTHASE FROM CUPRIAVIDUS NECATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY-BETA-HYDROXYBUTERATE POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 201-589; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUPRIAVIDUS NECATOR; SOURCE 3 ORGANISM_COMMON: ALCALIGENES EUTROPHUS; SOURCE 4 ORGANISM_TAXID: 106590; SOURCE 5 GENE: PHAC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYHYDROXYBUTYRATE SYNTHASE, PHAC, ALPHA/BETA HYDROLASE FOLD, KEYWDS 2 NONTEMPLATE-DEPENDENT POLYMERIZATION, TRANSFERASE, BIOSYNTHETIC KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.C.WITTENBORN,M.JOST,C.L.DRENNAN REVDAT 5 25-DEC-19 5T6O 1 REMARK REVDAT 4 27-SEP-17 5T6O 1 JRNL REVDAT 3 07-DEC-16 5T6O 1 JRNL REVDAT 2 02-NOV-16 5T6O 1 JRNL REVDAT 1 26-OCT-16 5T6O 0 JRNL AUTH E.C.WITTENBORN,M.JOST,Y.WEI,J.STUBBE,C.L.DRENNAN JRNL TITL STRUCTURE OF THE CATALYTIC DOMAIN OF THE CLASS I JRNL TITL 2 POLYHYDROXYBUTYRATE SYNTHASE FROM CUPRIAVIDUS NECATOR. JRNL REF J.BIOL.CHEM. V. 291 25264 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27742839 JRNL DOI 10.1074/JBC.M116.756833 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4-1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 74.0121 - 4.4389 1.00 2732 143 0.1530 0.1676 REMARK 3 2 4.4389 - 3.5233 1.00 2623 138 0.1401 0.1429 REMARK 3 3 3.5233 - 3.0779 1.00 2601 137 0.1741 0.2095 REMARK 3 4 3.0779 - 2.7965 1.00 2595 137 0.1864 0.2126 REMARK 3 5 2.7965 - 2.5960 1.00 2562 135 0.1859 0.2092 REMARK 3 6 2.5960 - 2.4430 1.00 2583 136 0.1733 0.2310 REMARK 3 7 2.4430 - 2.3206 1.00 2546 134 0.1734 0.1985 REMARK 3 8 2.3206 - 2.2196 1.00 2552 134 0.1864 0.2645 REMARK 3 9 2.2196 - 2.1341 1.00 2559 135 0.1790 0.2299 REMARK 3 10 2.1341 - 2.0605 1.00 2553 134 0.1747 0.2184 REMARK 3 11 2.0605 - 1.9961 1.00 2538 134 0.1918 0.2517 REMARK 3 12 1.9961 - 1.9390 1.00 2527 133 0.1918 0.2231 REMARK 3 13 1.9390 - 1.8879 1.00 2568 135 0.2502 0.3122 REMARK 3 14 1.8879 - 1.8419 1.00 2535 134 0.2409 0.2825 REMARK 3 15 1.8419 - 1.8000 1.00 2539 133 0.2511 0.2872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3051 REMARK 3 ANGLE : 0.821 4197 REMARK 3 CHIRALITY : 0.054 465 REMARK 3 PLANARITY : 0.006 538 REMARK 3 DIHEDRAL : 13.184 1748 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 201 THROUGH 589) REMARK 3 ORIGIN FOR THE GROUP (A): 86.6891 28.4958 18.1841 REMARK 3 T TENSOR REMARK 3 T11: 0.1813 T22: 0.1893 REMARK 3 T33: 0.1864 T12: -0.0151 REMARK 3 T13: 0.0010 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.6131 L22: 1.0266 REMARK 3 L33: 1.0579 L12: -0.1179 REMARK 3 L13: 0.1081 L23: 0.1514 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0106 S13: -0.0203 REMARK 3 S21: 0.0038 S22: 0.0700 S23: -0.1317 REMARK 3 S31: -0.0236 S32: 0.0942 S33: -0.0698 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T6O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20141103 REMARK 200 DATA SCALING SOFTWARE : XSCALE 20141103 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40649 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 25.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXDE 97-2.20090721 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M AMMONIUM SULFATE, 0.1 M HEPES PH REMARK 280 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.04000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.91000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.55000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.04000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.91000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.55000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.04000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.91000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.55000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.04000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.91000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 144.16000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 87.82000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 144.16000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 87.82000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 884 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 369 REMARK 465 ARG A 370 REMARK 465 GLU A 371 REMARK 465 ALA A 372 REMARK 465 THR A 373 REMARK 465 LEU A 374 REMARK 465 GLY A 375 REMARK 465 GLY A 376 REMARK 465 GLY A 377 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 201 OG REMARK 470 ARG A 207 CZ NH1 NH2 REMARK 470 LYS A 229 NZ REMARK 470 LYS A 234 NZ REMARK 470 GLU A 258 CD OE1 OE2 REMARK 470 GLU A 267 OE1 OE2 REMARK 470 LEU A 358 CD1 CD2 REMARK 470 ALA A 378 N CA CB REMARK 470 LYS A 451 NZ REMARK 470 LYS A 455 NZ REMARK 470 LYS A 498 CD CE NZ REMARK 470 LYS A 518 CG CD CE NZ REMARK 470 ASN A 519 CG OD1 ND2 REMARK 470 LYS A 520 CE NZ REMARK 470 GLU A 531 CG CD OE1 OE2 REMARK 470 ALA A 561 CB REMARK 470 ARG A 573 CD NE CZ NH1 NH2 REMARK 470 LYS A 588 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 715 O HOH A 935 2765 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 248 -174.68 56.85 REMARK 500 ASP A 254 55.76 -141.56 REMARK 500 LEU A 255 -86.95 -71.76 REMARK 500 ASP A 281 -168.01 -107.85 REMARK 500 ALA A 296 -59.47 -126.53 REMARK 500 ALA A 319 -132.51 59.31 REMARK 500 THR A 444 -77.80 -113.10 REMARK 500 ASN A 497 -167.61 75.88 REMARK 500 SER A 506 -164.04 83.54 REMARK 500 ARG A 521 -153.02 65.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 DBREF 5T6O A 201 589 UNP D3UAK8 D3UAK8_CUPNE 201 589 SEQADV 5T6O ALA A 319 UNP D3UAK8 CYS 319 ENGINEERED MUTATION SEQRES 1 A 389 SER ALA PHE GLU VAL GLY ARG ASN VAL ALA VAL THR GLU SEQRES 2 A 389 GLY ALA VAL VAL PHE GLU ASN GLU TYR PHE GLN LEU LEU SEQRES 3 A 389 GLN TYR LYS PRO LEU THR ASP LYS VAL HIS ALA ARG PRO SEQRES 4 A 389 LEU LEU MET VAL PRO PRO CYS ILE ASN LYS TYR TYR ILE SEQRES 5 A 389 LEU ASP LEU GLN PRO GLU SER SER LEU VAL ARG HIS VAL SEQRES 6 A 389 VAL GLU GLN GLY HIS THR VAL PHE LEU VAL SER TRP ARG SEQRES 7 A 389 ASN PRO ASP ALA SER MET ALA GLY SER THR TRP ASP ASP SEQRES 8 A 389 TYR ILE GLU HIS ALA ALA ILE ARG ALA ILE GLU VAL ALA SEQRES 9 A 389 ARG ASP ILE SER GLY GLN ASP LYS ILE ASN VAL LEU GLY SEQRES 10 A 389 PHE ALA VAL GLY GLY THR ILE VAL SER THR ALA LEU ALA SEQRES 11 A 389 VAL LEU ALA ALA ARG GLY GLU HIS PRO ALA ALA SER VAL SEQRES 12 A 389 THR LEU LEU THR THR LEU LEU ASP PHE ALA ASP THR GLY SEQRES 13 A 389 ILE LEU ASP VAL PHE VAL ASP GLU GLY HIS VAL GLN LEU SEQRES 14 A 389 ARG GLU ALA THR LEU GLY GLY GLY ALA GLY ALA PRO CYS SEQRES 15 A 389 ALA LEU LEU ARG GLY LEU GLU LEU ALA ASN THR PHE SER SEQRES 16 A 389 PHE LEU ARG PRO ASN ASP LEU VAL TRP ASN TYR VAL VAL SEQRES 17 A 389 ASP ASN TYR LEU LYS GLY ASN THR PRO VAL PRO PHE ASP SEQRES 18 A 389 LEU LEU PHE TRP ASN GLY ASP ALA THR ASN LEU PRO GLY SEQRES 19 A 389 PRO TRP TYR CYS TRP TYR LEU ARG HIS THR TYR LEU GLN SEQRES 20 A 389 ASN GLU LEU LYS VAL PRO GLY LYS LEU THR VAL CYS GLY SEQRES 21 A 389 VAL PRO VAL ASP LEU ALA SER ILE ASP VAL PRO THR TYR SEQRES 22 A 389 ILE TYR GLY SER ARG GLU ASP HIS ILE VAL PRO TRP THR SEQRES 23 A 389 ALA ALA TYR ALA SER THR ALA LEU LEU ALA ASN LYS LEU SEQRES 24 A 389 ARG PHE VAL LEU GLY ALA SER GLY HIS ILE ALA GLY VAL SEQRES 25 A 389 ILE ASN PRO PRO ALA LYS ASN LYS ARG SER HIS TRP THR SEQRES 26 A 389 ASN ASP ALA LEU PRO GLU SER PRO GLN GLN TRP LEU ALA SEQRES 27 A 389 GLY ALA ILE GLU HIS HIS GLY SER TRP TRP PRO ASP TRP SEQRES 28 A 389 THR ALA TRP LEU ALA GLY GLN ALA GLY ALA LYS ARG ALA SEQRES 29 A 389 ALA PRO ALA ASN TYR GLY ASN ALA ARG TYR ARG ALA ILE SEQRES 30 A 389 GLU PRO ALA PRO GLY ARG TYR VAL LYS ALA LYS ALA HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 HOH *283(H2 O) HELIX 1 AA1 LYS A 249 LEU A 255 5 7 HELIX 2 AA2 GLN A 256 SER A 259 5 4 HELIX 3 AA3 SER A 260 GLN A 268 1 9 HELIX 4 AA4 ASP A 281 ALA A 285 5 5 HELIX 5 AA5 THR A 288 ALA A 296 1 9 HELIX 6 AA6 ALA A 296 GLY A 309 1 14 HELIX 7 AA7 ALA A 319 ARG A 335 1 17 HELIX 8 AA8 LEU A 358 VAL A 362 5 5 HELIX 9 AA9 PRO A 381 LEU A 385 5 5 HELIX 10 AB1 ASP A 401 THR A 416 1 16 HELIX 11 AB2 PRO A 419 ASP A 428 1 10 HELIX 12 AB3 GLY A 434 THR A 444 1 11 HELIX 13 AB4 ASP A 464 ILE A 468 5 5 HELIX 14 AB5 PRO A 484 ALA A 490 1 7 HELIX 15 AB6 SER A 491 LEU A 494 5 4 HELIX 16 AB7 GLY A 507 ILE A 513 1 7 HELIX 17 AB8 PRO A 515 ASN A 519 5 5 HELIX 18 AB9 SER A 532 ALA A 540 1 9 HELIX 19 AC1 TRP A 547 ALA A 559 1 13 HELIX 20 AC2 ARG A 583 ALA A 587 5 5 SHEET 1 AA111 ILE A 541 HIS A 544 0 SHEET 2 AA111 SER A 522 THR A 525 -1 N HIS A 523 O HIS A 543 SHEET 3 AA111 LEU A 499 GLY A 504 -1 N LEU A 503 O TRP A 524 SHEET 4 AA111 THR A 472 SER A 477 1 N ILE A 474 O ARG A 500 SHEET 5 AA111 ALA A 340 LEU A 346 1 N LEU A 345 O TYR A 473 SHEET 6 AA111 ILE A 313 PHE A 318 1 N GLY A 317 O LEU A 346 SHEET 7 AA111 LEU A 240 VAL A 243 1 N VAL A 243 O LEU A 316 SHEET 8 AA111 VAL A 272 TRP A 277 1 O PHE A 273 N MET A 242 SHEET 9 AA111 PHE A 223 TYR A 228 -1 N LEU A 226 O LEU A 274 SHEET 10 AA111 GLY A 214 GLU A 219 -1 N PHE A 218 O LEU A 225 SHEET 11 AA111 GLU A 578 PRO A 579 -1 O GLU A 578 N VAL A 216 SHEET 1 AA2 2 LYS A 234 HIS A 236 0 SHEET 2 AA2 2 LYS A 562 ALA A 564 -1 O ARG A 563 N VAL A 235 SHEET 1 AA3 2 LEU A 388 ALA A 391 0 SHEET 2 AA3 2 THR A 430 PRO A 433 -1 O LEU A 432 N GLU A 389 SHEET 1 AA4 2 THR A 457 VAL A 458 0 SHEET 2 AA4 2 VAL A 461 PRO A 462 -1 O VAL A 461 N VAL A 458 SSBOND 1 CYS A 382 CYS A 438 1555 1555 2.05 CISPEP 1 ALA A 580 PRO A 581 0 9.40 SITE 1 AC1 3 ARG A 478 TRP A 485 HOH A 765 SITE 1 AC2 8 SER A 201 ALA A 202 PHE A 218 ASN A 220 SITE 2 AC2 8 ARG A 299 HOH A 760 HOH A 806 HOH A 925 SITE 1 AC3 8 PRO A 381 CYS A 382 TRP A 439 ARG A 442 SITE 2 AC3 8 HIS A 443 SO4 A 604 HOH A 738 HOH A 817 SITE 1 AC4 6 GLY A 379 ARG A 442 HIS A 443 GLN A 447 SITE 2 AC4 6 SO4 A 603 HOH A 715 CRYST1 72.080 87.820 137.100 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007294 0.00000