HEADER HYDROLASE/RNA 02-SEP-16 5T7B TITLE ARGONAUTE-2 - 5'-(E)-VINYLPHOSPHONATE 2'-O-METHYL-URIDINE MODIFIED TITLE 2 MRTTR GUIDE RNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (UVP)UAUAGAGCAAGAACACUGUU; COMPND 3 CHAIN: R; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN ARGONAUTE-2; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: HAGO2,ARGONAUTE RISC CATALYTIC COMPONENT 2,EUKARYOTIC COMPND 9 TRANSLATION INITIATION FACTOR 2C 2,EIF2C 2,PAZ PIWI DOMAIN PROTEIN, COMPND 10 PPD,PROTEIN SLICER; COMPND 11 EC: 3.1.26.-; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: AGO2, EIF2C2; SOURCE 10 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS RNAI, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.ELKAYAM,L.JOSHUA-TOR REVDAT 3 04-OCT-23 5T7B 1 REMARK REVDAT 2 20-NOV-19 5T7B 1 REMARK REVDAT 1 14-DEC-16 5T7B 0 JRNL AUTH E.ELKAYAM,L.JOSHUA-TOR JRNL TITL PROTEIN STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 27737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.9679 - 5.4472 0.96 2762 152 0.1730 0.2181 REMARK 3 2 5.4472 - 4.3239 0.97 2732 151 0.1571 0.2091 REMARK 3 3 4.3239 - 3.7774 0.88 2509 132 0.1775 0.2262 REMARK 3 4 3.7774 - 3.4320 0.89 2357 130 0.2016 0.2263 REMARK 3 5 3.4320 - 3.1860 0.98 2722 142 0.2137 0.2681 REMARK 3 6 3.1860 - 2.9982 0.99 2803 138 0.2277 0.2617 REMARK 3 7 2.9982 - 2.8480 0.99 2801 128 0.2292 0.2953 REMARK 3 8 2.8480 - 2.7241 0.99 2818 130 0.2337 0.2783 REMARK 3 9 2.7241 - 2.6192 0.75 2082 118 0.2559 0.3090 REMARK 3 10 2.6192 - 2.5288 0.99 2783 147 0.2571 0.2878 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6870 REMARK 3 ANGLE : 0.569 9339 REMARK 3 CHIRALITY : 0.042 1046 REMARK 3 PLANARITY : 0.004 1163 REMARK 3 DIHEDRAL : 12.800 4161 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 2 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.1823 29.1319 96.1948 REMARK 3 T TENSOR REMARK 3 T11: 0.5235 T22: 0.4380 REMARK 3 T33: 0.6092 T12: 0.0098 REMARK 3 T13: -0.0725 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 0.0331 L22: 4.4891 REMARK 3 L33: 3.8106 L12: 0.2998 REMARK 3 L13: -0.5161 L23: -4.1882 REMARK 3 S TENSOR REMARK 3 S11: -0.1229 S12: -0.1746 S13: -0.2078 REMARK 3 S21: -0.0418 S22: -0.2649 S23: -0.0487 REMARK 3 S31: 0.1851 S32: -0.0417 S33: 0.4456 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6247 4.1017 78.3669 REMARK 3 T TENSOR REMARK 3 T11: 0.4938 T22: 0.3592 REMARK 3 T33: 0.3332 T12: -0.0468 REMARK 3 T13: 0.0040 T23: -0.0450 REMARK 3 L TENSOR REMARK 3 L11: 2.1393 L22: 2.9472 REMARK 3 L33: 1.3947 L12: -0.5606 REMARK 3 L13: 0.3540 L23: -0.6909 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: 0.0106 S13: -0.5756 REMARK 3 S21: 0.0214 S22: -0.0101 S23: -0.0643 REMARK 3 S31: 0.4184 S32: -0.0601 S33: -0.0547 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.6174 9.2357 91.2321 REMARK 3 T TENSOR REMARK 3 T11: 0.3764 T22: 0.3605 REMARK 3 T33: 0.4228 T12: 0.0069 REMARK 3 T13: -0.0514 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.6881 L22: 1.2175 REMARK 3 L33: 3.0769 L12: 0.1301 REMARK 3 L13: -0.2083 L23: -1.2721 REMARK 3 S TENSOR REMARK 3 S11: 0.0519 S12: 0.0255 S13: -0.2088 REMARK 3 S21: 0.0757 S22: 0.1035 S23: 0.0854 REMARK 3 S31: -0.1892 S32: -0.0505 S33: -0.1487 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1223 1.3665 122.1258 REMARK 3 T TENSOR REMARK 3 T11: 0.4687 T22: 0.4107 REMARK 3 T33: 0.4019 T12: -0.0139 REMARK 3 T13: -0.0079 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.8479 L22: 2.9928 REMARK 3 L33: 2.4452 L12: 0.7359 REMARK 3 L13: -0.8185 L23: -0.9458 REMARK 3 S TENSOR REMARK 3 S11: 0.0790 S12: -0.0465 S13: -0.3001 REMARK 3 S21: 0.1398 S22: -0.0778 S23: -0.0090 REMARK 3 S31: -0.1240 S32: 0.0761 S33: 0.0075 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 347 THROUGH 641 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1855 40.9519 94.2403 REMARK 3 T TENSOR REMARK 3 T11: 0.4494 T22: 0.4385 REMARK 3 T33: 0.4381 T12: -0.0183 REMARK 3 T13: 0.0443 T23: -0.0776 REMARK 3 L TENSOR REMARK 3 L11: 1.6545 L22: 1.7372 REMARK 3 L33: 0.8206 L12: -0.1287 REMARK 3 L13: 0.2174 L23: -0.0454 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: -0.4154 S13: 0.5072 REMARK 3 S21: 0.4185 S22: 0.0194 S23: 0.1779 REMARK 3 S31: -0.1652 S32: -0.1494 S33: 0.0138 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 642 THROUGH 859 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2508 31.6929 83.0024 REMARK 3 T TENSOR REMARK 3 T11: 0.2591 T22: 0.2533 REMARK 3 T33: 0.3532 T12: -0.0092 REMARK 3 T13: -0.0169 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 2.7768 L22: 1.2642 REMARK 3 L33: 1.1757 L12: 0.3234 REMARK 3 L13: -0.3883 L23: 0.0627 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.1158 S13: 0.0340 REMARK 3 S21: 0.0951 S22: 0.0180 S23: 0.2854 REMARK 3 S31: 0.0825 S32: -0.1083 S33: 0.0084 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27742 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.529 REMARK 200 RESOLUTION RANGE LOW (A) : 65.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.65500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4F3T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH=9.0, 10% PEG 3350 REMARK 280 (W/V), 8% 2-PROPANOL (V/V), 0.12 M PHENOL, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.15300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 A R 11 REMARK 465 G R 12 REMARK 465 A R 13 REMARK 465 A R 14 REMARK 465 C R 15 REMARK 465 A R 16 REMARK 465 C R 17 REMARK 465 U R 18 REMARK 465 G R 19 REMARK 465 U R 20 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 PRO A 16 REMARK 465 PRO A 17 REMARK 465 ILE A 18 REMARK 465 GLN A 19 REMARK 465 GLY A 20 REMARK 465 TYR A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 121 REMARK 465 GLU A 122 REMARK 465 GLY A 123 REMARK 465 LYS A 124 REMARK 465 ASP A 125 REMARK 465 ARG A 126 REMARK 465 GLU A 186 REMARK 465 GLY A 187 REMARK 465 CYS A 188 REMARK 465 GLU A 245 REMARK 465 GLN A 246 REMARK 465 GLN A 247 REMARK 465 GLY A 273 REMARK 465 GLN A 274 REMARK 465 MET A 275 REMARK 465 ALA A 603 REMARK 465 GLY A 604 REMARK 465 ASP A 605 REMARK 465 GLY A 606 REMARK 465 GLU A 821 REMARK 465 HIS A 822 REMARK 465 ASP A 823 REMARK 465 SER A 824 REMARK 465 ALA A 825 REMARK 465 GLU A 826 REMARK 465 GLY A 827 REMARK 465 SER A 828 REMARK 465 HIS A 829 REMARK 465 THR A 830 REMARK 465 SER A 831 REMARK 465 GLY A 832 REMARK 465 GLN A 833 REMARK 465 SER A 834 REMARK 465 ASN A 835 REMARK 465 GLY A 836 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 478 O MET A 483 2.01 REMARK 500 O VAL A 569 NH2 ARG A 624 2.07 REMARK 500 OG1 THR A 538 O GLN A 847 2.14 REMARK 500 OG1 THR A 251 OG SER A 253 2.15 REMARK 500 OP2 G R 8 NH2 ARG A 761 2.17 REMARK 500 NH1 ARG A 583 O ALA A 620 2.19 REMARK 500 NZ LYS A 566 OXT ALA A 859 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 UVP R 1 C3' - O3' - P ANGL. DEV. = 15.3 DEGREES REMARK 500 U R 2 O3' - P - OP2 ANGL. DEV. = -17.6 DEGREES REMARK 500 U R 2 O3' - P - OP1 ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -176.33 -175.21 REMARK 500 ILE A 52 173.41 -57.64 REMARK 500 ARG A 97 -107.03 55.78 REMARK 500 LYS A 98 12.03 -141.15 REMARK 500 PRO A 107 56.48 -66.00 REMARK 500 ASN A 190 66.80 -118.62 REMARK 500 GLU A 342 2.27 -69.40 REMARK 500 ALA A 452 179.75 170.85 REMARK 500 ALA A 495 174.38 167.36 REMARK 500 LEU A 515 107.77 -57.49 REMARK 500 ASN A 623 -30.55 -137.93 REMARK 500 LYS A 739 -42.74 84.05 REMARK 500 TRP A 769 136.17 -170.79 REMARK 500 ASP A 770 87.30 -152.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPH A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPH A 902 DBREF 5T7B R 1 21 PDB 5T7B 5T7B 1 21 DBREF 5T7B A 1 859 UNP Q9UKV8 AGO2_HUMAN 1 859 SEQADV 5T7B GLY A -1 UNP Q9UKV8 EXPRESSION TAG SEQADV 5T7B ALA A 0 UNP Q9UKV8 EXPRESSION TAG SEQADV 5T7B ASN A 597 UNP Q9UKV8 ASP 597 ENGINEERED MUTATION SEQADV 5T7B ASN A 669 UNP Q9UKV8 ASP 669 ENGINEERED MUTATION SEQRES 1 R 21 UVP U A U A G A G C A A G A SEQRES 2 R 21 A C A C U G U U SEQRES 1 A 861 GLY ALA MET TYR SER GLY ALA GLY PRO ALA LEU ALA PRO SEQRES 2 A 861 PRO ALA PRO PRO PRO PRO ILE GLN GLY TYR ALA PHE LYS SEQRES 3 A 861 PRO PRO PRO ARG PRO ASP PHE GLY THR SER GLY ARG THR SEQRES 4 A 861 ILE LYS LEU GLN ALA ASN PHE PHE GLU MET ASP ILE PRO SEQRES 5 A 861 LYS ILE ASP ILE TYR HIS TYR GLU LEU ASP ILE LYS PRO SEQRES 6 A 861 GLU LYS CYS PRO ARG ARG VAL ASN ARG GLU ILE VAL GLU SEQRES 7 A 861 HIS MET VAL GLN HIS PHE LYS THR GLN ILE PHE GLY ASP SEQRES 8 A 861 ARG LYS PRO VAL PHE ASP GLY ARG LYS ASN LEU TYR THR SEQRES 9 A 861 ALA MET PRO LEU PRO ILE GLY ARG ASP LYS VAL GLU LEU SEQRES 10 A 861 GLU VAL THR LEU PRO GLY GLU GLY LYS ASP ARG ILE PHE SEQRES 11 A 861 LYS VAL SER ILE LYS TRP VAL SER CYS VAL SER LEU GLN SEQRES 12 A 861 ALA LEU HIS ASP ALA LEU SER GLY ARG LEU PRO SER VAL SEQRES 13 A 861 PRO PHE GLU THR ILE GLN ALA LEU ASP VAL VAL MET ARG SEQRES 14 A 861 HIS LEU PRO SER MET ARG TYR THR PRO VAL GLY ARG SER SEQRES 15 A 861 PHE PHE THR ALA SER GLU GLY CYS SER ASN PRO LEU GLY SEQRES 16 A 861 GLY GLY ARG GLU VAL TRP PHE GLY PHE HIS GLN SER VAL SEQRES 17 A 861 ARG PRO SER LEU TRP LYS MET MET LEU ASN ILE ASP VAL SEQRES 18 A 861 SER ALA THR ALA PHE TYR LYS ALA GLN PRO VAL ILE GLU SEQRES 19 A 861 PHE VAL CYS GLU VAL LEU ASP PHE LYS SER ILE GLU GLU SEQRES 20 A 861 GLN GLN LYS PRO LEU THR ASP SER GLN ARG VAL LYS PHE SEQRES 21 A 861 THR LYS GLU ILE LYS GLY LEU LYS VAL GLU ILE THR HIS SEQRES 22 A 861 CYS GLY GLN MET LYS ARG LYS TYR ARG VAL CYS ASN VAL SEQRES 23 A 861 THR ARG ARG PRO ALA SER HIS GLN THR PHE PRO LEU GLN SEQRES 24 A 861 GLN GLU SER GLY GLN THR VAL GLU CYS THR VAL ALA GLN SEQRES 25 A 861 TYR PHE LYS ASP ARG HIS LYS LEU VAL LEU ARG TYR PRO SEQRES 26 A 861 HIS LEU PRO CYS LEU GLN VAL GLY GLN GLU GLN LYS HIS SEQRES 27 A 861 THR TYR LEU PRO LEU GLU VAL CYS ASN ILE VAL ALA GLY SEQRES 28 A 861 GLN ARG CYS ILE LYS LYS LEU THR ASP ASN GLN THR SER SEQRES 29 A 861 THR MET ILE ARG ALA THR ALA ARG SER ALA PRO ASP ARG SEQRES 30 A 861 GLN GLU GLU ILE SER LYS LEU MET ARG SER ALA SER PHE SEQRES 31 A 861 ASN THR ASP PRO TYR VAL ARG GLU PHE GLY ILE MET VAL SEQRES 32 A 861 LYS ASP GLU MET THR ASP VAL THR GLY ARG VAL LEU GLN SEQRES 33 A 861 PRO PRO SER ILE LEU TYR GLY GLY ARG ASN LYS ALA ILE SEQRES 34 A 861 ALA THR PRO VAL GLN GLY VAL TRP ASP MET ARG ASN LYS SEQRES 35 A 861 GLN PHE HIS THR GLY ILE GLU ILE LYS VAL TRP ALA ILE SEQRES 36 A 861 ALA CYS PHE ALA PRO GLN ARG GLN CYS THR GLU VAL HIS SEQRES 37 A 861 LEU LYS SER PHE THR GLU GLN LEU ARG LYS ILE SER ARG SEQRES 38 A 861 ASP ALA GLY MET PRO ILE GLN GLY GLN PRO CYS PHE CYS SEQRES 39 A 861 LYS TYR ALA GLN GLY ALA ASP SER VAL GLU PRO MET PHE SEQRES 40 A 861 ARG HIS LEU LYS ASN THR TYR ALA GLY LEU GLN LEU VAL SEQRES 41 A 861 VAL VAL ILE LEU PRO GLY LYS THR PRO VAL TYR ALA GLU SEQRES 42 A 861 VAL LYS ARG VAL GLY ASP THR VAL LEU GLY MET ALA THR SEQRES 43 A 861 GLN CYS VAL GLN MET LYS ASN VAL GLN ARG THR THR PRO SEQRES 44 A 861 GLN THR LEU SER ASN LEU CYS LEU LYS ILE ASN VAL LYS SEQRES 45 A 861 LEU GLY GLY VAL ASN ASN ILE LEU LEU PRO GLN GLY ARG SEQRES 46 A 861 PRO PRO VAL PHE GLN GLN PRO VAL ILE PHE LEU GLY ALA SEQRES 47 A 861 ASN VAL THR HIS PRO PRO ALA GLY ASP GLY LYS LYS PRO SEQRES 48 A 861 SER ILE ALA ALA VAL VAL GLY SER MET ASP ALA HIS PRO SEQRES 49 A 861 ASN ARG TYR CYS ALA THR VAL ARG VAL GLN GLN HIS ARG SEQRES 50 A 861 GLN GLU ILE ILE GLN ASP LEU ALA ALA MET VAL ARG GLU SEQRES 51 A 861 LEU LEU ILE GLN PHE TYR LYS SER THR ARG PHE LYS PRO SEQRES 52 A 861 THR ARG ILE ILE PHE TYR ARG ASN GLY VAL SER GLU GLY SEQRES 53 A 861 GLN PHE GLN GLN VAL LEU HIS HIS GLU LEU LEU ALA ILE SEQRES 54 A 861 ARG GLU ALA CYS ILE LYS LEU GLU LYS ASP TYR GLN PRO SEQRES 55 A 861 GLY ILE THR PHE ILE VAL VAL GLN LYS ARG HIS HIS THR SEQRES 56 A 861 ARG LEU PHE CYS THR ASP LYS ASN GLU ARG VAL GLY LYS SEQRES 57 A 861 SER GLY ASN ILE PRO ALA GLY THR THR VAL ASP THR LYS SEQRES 58 A 861 ILE THR HIS PRO THR GLU PHE ASP PHE TYR LEU CYS SER SEQRES 59 A 861 HIS ALA GLY ILE GLN GLY THR SER ARG PRO SER HIS TYR SEQRES 60 A 861 HIS VAL LEU TRP ASP ASP ASN ARG PHE SER SER ASP GLU SEQRES 61 A 861 LEU GLN ILE LEU THR TYR GLN LEU CYS HIS THR TYR VAL SEQRES 62 A 861 ARG CYS THR ARG SER VAL SER ILE PRO ALA PRO ALA TYR SEQRES 63 A 861 TYR ALA HIS LEU VAL ALA PHE ARG ALA ARG TYR HIS LEU SEQRES 64 A 861 VAL ASP LYS GLU HIS ASP SER ALA GLU GLY SER HIS THR SEQRES 65 A 861 SER GLY GLN SER ASN GLY ARG ASP HIS GLN ALA LEU ALA SEQRES 66 A 861 LYS ALA VAL GLN VAL HIS GLN ASP THR LEU ARG THR MET SEQRES 67 A 861 TYR PHE ALA HET UVP R 1 22 HET IPH A 901 13 HET IPH A 902 13 HETNAM UVP 1-[(5E)-5,6-DIDEOXY-2-O-METHYL-6-PHOSPHONO-BETA-D-RIBO- HETNAM 2 UVP HEX-5-ENOFURANOSYL]-2,4-DIHYDROXYPYRIMIDIN-1-IUM HETNAM IPH PHENOL HETSYN UVP URIDINE VINYL PHOSPHONATE FORMUL 1 UVP C11 H16 N2 O8 P 1+ FORMUL 3 IPH 2(C6 H6 O) FORMUL 5 HOH *9(H2 O) HELIX 1 AA1 PRO A 67 PHE A 82 1 16 HELIX 2 AA2 LEU A 140 SER A 148 1 9 HELIX 3 AA3 PRO A 155 TYR A 174 1 20 HELIX 4 AA4 PRO A 229 ASP A 239 1 11 HELIX 5 AA5 THR A 251 LYS A 263 1 13 HELIX 6 AA6 VAL A 308 ARG A 315 1 8 HELIX 7 AA7 THR A 357 ALA A 369 1 13 HELIX 8 AA8 SER A 371 SER A 387 1 17 HELIX 9 AA9 PHE A 388 THR A 390 5 3 HELIX 10 AB1 ASP A 391 PHE A 397 1 7 HELIX 11 AB2 THR A 463 ALA A 481 1 19 HELIX 12 AB3 SER A 500 TYR A 512 1 13 HELIX 13 AB4 PRO A 527 VAL A 539 1 13 HELIX 14 AB5 MET A 549 ARG A 554 1 6 HELIX 15 AB6 THR A 556 LEU A 571 1 16 HELIX 16 AB7 PRO A 584 GLN A 589 5 6 HELIX 17 AB8 ASP A 641 ARG A 658 1 18 HELIX 18 AB9 SER A 672 GLY A 674 5 3 HELIX 19 AC1 GLN A 675 GLU A 695 1 21 HELIX 20 AC2 ASP A 719 ARG A 723 5 5 HELIX 21 AC3 SER A 775 CYS A 787 1 13 HELIX 22 AC4 PRO A 800 LEU A 817 1 18 HELIX 23 AC5 ASP A 838 GLN A 847 1 10 HELIX 24 AC6 HIS A 849 ARG A 854 1 6 SHEET 1 AA111 TYR A 625 GLN A 632 0 SHEET 2 AA111 SER A 610 SER A 617 -1 N ALA A 612 O ARG A 630 SHEET 3 AA111 VAL A 591 THR A 599 -1 N ASN A 597 O ALA A 613 SHEET 4 AA111 ARG A 663 ASN A 669 1 O ILE A 665 N LEU A 594 SHEET 5 AA111 GLY A 701 GLN A 708 1 O VAL A 707 N ARG A 668 SHEET 6 AA111 SER A 763 ASP A 770 -1 O TRP A 769 N PHE A 704 SHEET 7 AA111 PHE A 746 CYS A 751 -1 N LEU A 750 O SER A 763 SHEET 8 AA111 THR A 734 VAL A 736 -1 N VAL A 736 O TYR A 749 SHEET 9 AA111 THR A 406 VAL A 412 -1 N ARG A 411 O THR A 735 SHEET 10 AA111 ARG A 36 ALA A 42 -1 N ILE A 38 O GLY A 410 SHEET 11 AA111 LEU A 715 CYS A 717 -1 O PHE A 716 N GLN A 41 SHEET 1 AA2 4 THR A 175 VAL A 177 0 SHEET 2 AA2 4 SER A 180 PHE A 182 -1 O SER A 180 N VAL A 177 SHEET 3 AA2 4 ARG A 196 SER A 209 -1 O PHE A 202 N PHE A 181 SHEET 4 AA2 4 PRO A 191 GLY A 193 -1 N LEU A 192 O ARG A 196 SHEET 1 AA3 6 THR A 175 VAL A 177 0 SHEET 2 AA3 6 SER A 180 PHE A 182 -1 O SER A 180 N VAL A 177 SHEET 3 AA3 6 ARG A 196 SER A 209 -1 O PHE A 202 N PHE A 181 SHEET 4 AA3 6 LYS A 212 TYR A 225 -1 O PHE A 224 N GLU A 197 SHEET 5 AA3 6 PHE A 44 ASP A 48 -1 N PHE A 45 O LEU A 215 SHEET 6 AA3 6 MET A 400 VAL A 401 -1 O MET A 400 N ASP A 48 SHEET 1 AA4 5 VAL A 93 PHE A 94 0 SHEET 2 AA4 5 ASN A 99 THR A 102 -1 O TYR A 101 N VAL A 93 SHEET 3 AA4 5 ASP A 53 LYS A 62 -1 N TYR A 57 O LEU A 100 SHEET 4 AA4 5 PHE A 128 SER A 139 -1 O VAL A 138 N ILE A 54 SHEET 5 AA4 5 VAL A 113 VAL A 117 -1 N VAL A 117 O PHE A 128 SHEET 1 AA5 5 THR A 337 PRO A 340 0 SHEET 2 AA5 5 PRO A 326 VAL A 330 -1 N VAL A 330 O THR A 337 SHEET 3 AA5 5 LYS A 278 PRO A 288 -1 N ASN A 283 O GLN A 329 SHEET 4 AA5 5 LYS A 266 ILE A 269 -1 N VAL A 267 O TYR A 279 SHEET 5 AA5 5 CYS A 344 ILE A 346 -1 O ASN A 345 N GLU A 268 SHEET 1 AA6 2 THR A 293 GLN A 297 0 SHEET 2 AA6 2 THR A 303 THR A 307 -1 O VAL A 304 N LEU A 296 SHEET 1 AA7 3 ILE A 427 ALA A 428 0 SHEET 2 AA7 3 ILE A 418 LEU A 419 -1 N ILE A 418 O ALA A 428 SHEET 3 AA7 3 ILE A 577 LEU A 578 -1 O ILE A 577 N LEU A 419 SHEET 1 AA8 4 PHE A 491 TYR A 494 0 SHEET 2 AA8 4 TRP A 451 CYS A 455 1 N ILE A 453 O PHE A 491 SHEET 3 AA8 4 LEU A 517 LEU A 522 1 O VAL A 519 N ALA A 454 SHEET 4 AA8 4 ALA A 543 GLN A 548 1 O GLN A 545 N VAL A 520 LINK O3' UVP R 1 P U R 2 1555 1555 1.56 CISPEP 1 LYS A 62 PRO A 63 0 -1.16 CISPEP 2 HIS A 621 PRO A 622 0 -5.70 SITE 1 AC1 6 GLN A 589 PRO A 590 VAL A 591 ASP A 619 SITE 2 AC1 6 ALA A 620 PHE A 653 SITE 1 AC2 4 LEU A 650 TYR A 654 LYS A 660 TYR A 698 CRYST1 63.207 108.306 68.821 90.00 106.62 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015821 0.000000 0.004723 0.00000 SCALE2 0.000000 0.009233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015164 0.00000 HETATM 1 OP UVP R 1 42.517 44.337 100.560 1.00 83.27 O HETATM 2 P UVP R 1 42.165 43.416 101.821 1.00 78.95 P HETATM 3 OP1 UVP R 1 42.368 41.940 101.246 1.00 77.93 O HETATM 4 OP2 UVP R 1 40.736 43.595 102.126 1.00 81.81 O HETATM 5 C6' UVP R 1 43.385 43.690 103.129 1.00 76.45 C HETATM 6 C5' UVP R 1 44.721 42.977 102.937 1.00 74.11 C HETATM 7 C4' UVP R 1 45.738 43.208 104.053 1.00 71.07 C HETATM 8 O4' UVP R 1 45.654 42.139 104.999 1.00 75.07 O HETATM 9 C3' UVP R 1 47.167 43.116 103.512 1.00 66.51 C HETATM 10 O3' UVP R 1 47.744 44.430 103.516 1.00 51.06 O HETATM 11 C2' UVP R 1 47.810 42.208 104.556 1.00 77.55 C HETATM 12 O2' UVP R 1 49.154 42.626 104.887 1.00 85.03 O HETATM 13 CB' UVP R 1 49.996 41.488 105.089 1.00 86.55 C HETATM 14 C1' UVP R 1 46.858 42.332 105.723 1.00 79.07 C HETATM 15 N1 UVP R 1 46.973 41.176 106.630 1.00 84.72 N HETATM 16 C2 UVP R 1 47.778 41.198 107.704 1.00 89.66 C HETATM 17 O2 UVP R 1 48.437 42.205 107.962 1.00 88.57 O HETATM 18 N3 UVP R 1 47.861 40.069 108.536 1.00 93.14 N HETATM 19 C4 UVP R 1 47.114 38.917 108.252 1.00 91.11 C HETATM 20 O4 UVP R 1 47.182 37.926 108.976 1.00 92.01 O HETATM 21 C5 UVP R 1 46.289 38.899 107.140 1.00 87.48 C HETATM 22 C6 UVP R 1 46.223 40.026 106.333 1.00 84.63 C