HEADER TRANSFERASE/TRANSFERASE INHIBITOR 07-SEP-16 5T8I TITLE PI3KDELTA IN COMPLEX WITH THE INHIBITOR GS-9901 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC COMPND 3 SUBUNIT DELTA ISOFORM; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 106-1043; COMPND 6 SYNONYM: PTDINS-3-KINASE SUBUNIT DELTA,PHOSPHATIDYLINOSITOL 4,5- COMPND 7 BISPHOSPHATE 3-KINASE 110 KDA CATALYTIC SUBUNIT DELTA,P110DELTA; COMPND 8 EC: 2.7.1.153; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PIK3CD; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PI3KDELTA PHOSPHATIDYLINOSITOL-3-KINASE PI(3)K, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.SOMOZA,A.VILLASENOR REVDAT 2 06-MAR-24 5T8I 1 REMARK REVDAT 1 28-DEC-16 5T8I 0 JRNL AUTH L.PATEL,J.CHANDRASEKHAR,J.EVARTS,K.FORSETH,A.HARAN,C.IP, JRNL AUTH 2 A.KASHISHIAN,M.KIM,D.KODITEK,S.KOPPENOL,L.LAD,E.-I.LEPIST, JRNL AUTH 3 M.E.MCGRATH,S.PERREAULT,K.PURI,A.VILLASENOR,J.R.SOMOZA, JRNL AUTH 4 B.STEINER,J.THERRIEN,J.TRILBERG,G.PHILLIPS JRNL TITL THE DISCOVERY OF GS-9901: A POTENT, SELECTIVE AND JRNL TITL 2 METABOLICALLY STABLE INHIBITOR OF PI3KD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.347 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 28810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8950 - 6.2744 0.87 1949 145 0.2157 0.2767 REMARK 3 2 6.2744 - 4.9821 0.89 1907 142 0.2453 0.3171 REMARK 3 3 4.9821 - 4.3529 0.91 1916 142 0.2235 0.2503 REMARK 3 4 4.3529 - 3.9552 0.91 1915 143 0.2305 0.3045 REMARK 3 5 3.9552 - 3.6718 0.92 1927 144 0.2459 0.3069 REMARK 3 6 3.6718 - 3.4554 0.92 1944 146 0.2634 0.3190 REMARK 3 7 3.4554 - 3.2824 0.93 1921 142 0.2845 0.3908 REMARK 3 8 3.2824 - 3.1395 0.92 1902 143 0.2971 0.3000 REMARK 3 9 3.1395 - 3.0187 0.92 1925 143 0.3117 0.4123 REMARK 3 10 3.0187 - 2.9146 0.92 1899 142 0.3223 0.3419 REMARK 3 11 2.9146 - 2.8234 0.94 1971 147 0.3169 0.4023 REMARK 3 12 2.8234 - 2.7427 0.93 1912 142 0.3354 0.4287 REMARK 3 13 2.7427 - 2.6705 0.93 1912 142 0.3262 0.3985 REMARK 3 14 2.6705 - 2.6054 0.87 1811 136 0.3241 0.3796 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.442 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6717 REMARK 3 ANGLE : 0.703 9070 REMARK 3 CHIRALITY : 0.028 1001 REMARK 3 PLANARITY : 0.002 1146 REMARK 3 DIHEDRAL : 15.351 2486 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28814 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS USED FOR SEEDING WERE REMARK 280 OBTAINED BY VAPOR DIFFUSION AT 20 DEGREES C WITH 25 NL OF 11 MG/ REMARK 280 ML (DELTA)ABD-P110(DELTA) AND 0.9 MM OF A P110(DELTA) INHIBITOR REMARK 280 IN PROTEIN STORAGE BUFFER (20 MMTRIS, PH 7.2, 50 MM (NH4)2SO4, 1% REMARK 280 V/V ETHYLENE GLYCOL, 1% (W/V) BETAINE, 0.3 MICROM CHAPS, AND 5 REMARK 280 MM TCEP) ADDED TO 25 NL OF RESERVOIR SOLUTION (25% (W/V) PEG REMARK 280 3350, 0.1 M BIS-TRIS (PH 6.5). CRYSTALS WERE PULVERIZED, POOLED REMARK 280 TOGETHER IN THE RESERVOIR SOLUTION, VORTEXED WITH A SEED-BEAD REMARK 280 (HAMPTON RESEARCH) FOR 45S, FLASH-FROZEN IN LIQUID NITROGEN, AND REMARK 280 STORED AT -80 DEGREES C. FOR SEEDING CRYSTALLIZATION TRIALS, THE REMARK 280 FROZEN SEED WAS THAWED AND DILUTED 500-FOLD IN 25% (V/V) PEG 300, REMARK 280 0.1 M TRIS (PH 8.5). PREPARATION OF DIFFRACTION QUALITY (DELTA) REMARK 280 ABD-P110(DELTA):GS-9901 CRYSTALS STARTED WITH A MIXTURE OF 0.48 REMARK 280 MICROL OF 2.5% (W/V) N-DODECYL-(BETA)-D-MALTOSIDE, 0.30 MICROL REMARK 280 OF 20 MM LIGAND, AND 12 MICROL OF 12 MG/ML (DELTA)ABD-P110(DELTA) REMARK 280 IN STORAGE BUFFER (DESCRIBED ABOVE). THE MIXTURE WAS ALLOWED TO REMARK 280 SIT FOR 1 H AT ROOM TEMPERATURE INSTEAD OF 4 DEGREES C TO REMARK 280 PREVENT THE FORMATION OF WHITE PRECIPITATE. SEEDED VAPOR REMARK 280 DIFFUSION DROPLETS WERE ASSEMBLED BY ADDING 90 NL OF THE 500- REMARK 280 FOLD DILUTED SEED (DESCRIBED ABOVE) TO 100 NL OF THE N-DODECYL- REMARK 280 (BETA)-D-MALTOSIDE-LIGAND-(DELTA)ABD-P110(DELTA) MIXTURE. THE REMARK 280 DROPLETS WERE EQUILIBRATED AGAINST RESERVOIR WELLS CONTAINING 50 REMARK 280 MICROL OF 1% TO 30% (V/V) PEG 300, 0.1 M TRIS (PH 8.5) AT 20 REMARK 280 DEGREES C. CRYSTALS APPEARED IN 2-5 DAYS ACROSS THE 1% TO 30% REMARK 280 PEG RANGE. CRYSTALS WERE CRYOPROTECTED IN 20% (W/V) GLYCEROL, 25% REMARK 280 (W/V) PEG 300, 0.1 M TRIS (PH 8.5), 50 MM AMMONIUM SULFATE, 0.2% REMARK 280 (W/V) N-DODECYL-(BETA)-D-MALTOSIDE, 0.2 MM LIGAND AND WERE REMARK 280 FLASH-FROZEN IN LIQUID NITROGEN FOR DATA COLLECTION., REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.29500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 111.29500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.02250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.09850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.02250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.09850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 111.29500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.02250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.09850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 111.29500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.02250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.09850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CE MET A 714 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 106 REMARK 465 ASP A 107 REMARK 465 ARG A 108 REMARK 465 SER A 174 REMARK 465 ALA A 175 REMARK 465 ARG A 176 REMARK 465 GLY A 177 REMARK 465 TRP A 178 REMARK 465 ARG A 179 REMARK 465 ALA A 180 REMARK 465 GLY A 181 REMARK 465 LEU A 182 REMARK 465 LEU A 183 REMARK 465 ARG A 184 REMARK 465 VAL A 185 REMARK 465 SER A 186 REMARK 465 PRO A 231 REMARK 465 LEU A 232 REMARK 465 VAL A 233 REMARK 465 GLU A 234 REMARK 465 PRO A 292 REMARK 465 ALA A 293 REMARK 465 PRO A 294 REMARK 465 GLN A 295 REMARK 465 VAL A 296 REMARK 465 GLN A 297 REMARK 465 LYS A 298 REMARK 465 PRO A 299 REMARK 465 ARG A 300 REMARK 465 ALA A 301 REMARK 465 LYS A 302 REMARK 465 PRO A 303 REMARK 465 PRO A 304 REMARK 465 PRO A 305 REMARK 465 ILE A 306 REMARK 465 PRO A 307 REMARK 465 ALA A 308 REMARK 465 LYS A 309 REMARK 465 LYS A 310 REMARK 465 PRO A 311 REMARK 465 SER A 312 REMARK 465 SER A 313 REMARK 465 VAL A 314 REMARK 465 SER A 315 REMARK 465 ASP A 336 REMARK 465 GLU A 337 REMARK 465 ARG A 338 REMARK 465 GLU A 399 REMARK 465 LYS A 400 REMARK 465 ALA A 401 REMARK 465 LYS A 402 REMARK 465 LYS A 403 REMARK 465 ALA A 404 REMARK 465 ARG A 405 REMARK 465 SER A 406 REMARK 465 THR A 407 REMARK 465 LYS A 408 REMARK 465 LYS A 409 REMARK 465 LYS A 410 REMARK 465 SER A 411 REMARK 465 LYS A 412 REMARK 465 LYS A 413 REMARK 465 ALA A 414 REMARK 465 ASP A 415 REMARK 465 PRO A 446 REMARK 465 ASP A 447 REMARK 465 GLU A 448 REMARK 465 LYS A 449 REMARK 465 GLY A 450 REMARK 465 GLU A 451 REMARK 465 PRO A 480 REMARK 465 HIS A 481 REMARK 465 GLY A 495 REMARK 465 ARG A 496 REMARK 465 HIS A 497 REMARK 465 GLY A 498 REMARK 465 GLU A 499 REMARK 465 ARG A 500 REMARK 465 GLY A 501 REMARK 465 ARG A 502 REMARK 465 ILE A 503 REMARK 465 THR A 504 REMARK 465 GLU A 505 REMARK 465 GLU A 506 REMARK 465 GLU A 507 REMARK 465 GLN A 508 REMARK 465 LEU A 509 REMARK 465 GLN A 510 REMARK 465 ARG A 517 REMARK 465 ARG A 518 REMARK 465 GLY A 519 REMARK 465 SER A 520 REMARK 465 GLY A 521 REMARK 465 GLU A 522 REMARK 465 LEU A 523 REMARK 465 PHE A 919 REMARK 465 LYS A 920 REMARK 465 THR A 921 REMARK 465 LYS A 922 REMARK 465 PHE A 923 REMARK 465 GLY A 924 REMARK 465 ILE A 925 REMARK 465 ASN A 926 REMARK 465 ARG A 927 REMARK 465 GLU A 928 REMARK 465 ARG A 929 REMARK 465 VAL A 930 REMARK 465 PRO A 931 REMARK 465 PHE A 932 REMARK 465 ILE A 933 REMARK 465 LEU A 934 REMARK 465 GLU A 1025 REMARK 465 SER A 1026 REMARK 465 TRP A 1027 REMARK 465 LYS A 1028 REMARK 465 THR A 1029 REMARK 465 LYS A 1030 REMARK 465 VAL A 1031 REMARK 465 ASN A 1032 REMARK 465 TRP A 1033 REMARK 465 LEU A 1034 REMARK 465 ALA A 1035 REMARK 465 HIS A 1036 REMARK 465 ASN A 1037 REMARK 465 VAL A 1038 REMARK 465 SER A 1039 REMARK 465 LYS A 1040 REMARK 465 ASP A 1041 REMARK 465 ASN A 1042 REMARK 465 ARG A 1043 REMARK 465 GLN A 1044 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 366 HG SER A 367 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SD MET A 714 CE MET A 714 4566 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 714 CG - SD - CE ANGL. DEV. = 19.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 226 38.99 -85.92 REMARK 500 VAL A 227 -30.41 -157.14 REMARK 500 ARG A 229 114.24 65.31 REMARK 500 HIS A 247 59.83 -93.23 REMARK 500 ASN A 253 53.93 -95.96 REMARK 500 GLN A 289 54.93 -114.25 REMARK 500 SER A 290 -160.00 -131.27 REMARK 500 LEU A 319 96.03 -50.14 REMARK 500 ILE A 328 -89.13 -82.09 REMARK 500 HIS A 349 71.32 -101.85 REMARK 500 SER A 367 174.88 80.82 REMARK 500 TRP A 371 -55.69 -134.29 REMARK 500 ILE A 418 -74.85 -130.41 REMARK 500 THR A 434 149.25 -170.32 REMARK 500 VAL A 478 17.07 -140.36 REMARK 500 LEU A 492 -38.01 -37.23 REMARK 500 ARG A 512 -70.81 15.97 REMARK 500 GLU A 513 -43.74 -17.84 REMARK 500 LYS A 533 -132.35 9.44 REMARK 500 MET A 534 65.29 -49.37 REMARK 500 PHE A 542 52.38 -146.77 REMARK 500 PHE A 587 58.81 -144.96 REMARK 500 ALA A 727 -42.99 -165.29 REMARK 500 HIS A 730 60.61 62.06 REMARK 500 ASP A 736 101.55 -160.09 REMARK 500 GLU A 742 -88.72 -89.80 REMARK 500 THR A 750 -166.18 -169.41 REMARK 500 ASP A 753 36.46 -90.59 REMARK 500 SER A 754 -174.19 -69.65 REMARK 500 GLU A 766 58.26 -67.00 REMARK 500 GLU A 767 -55.13 -177.94 REMARK 500 ASN A 840 63.06 68.81 REMARK 500 ASP A 911 74.48 54.28 REMARK 500 TYR A 936 43.45 -82.07 REMARK 500 SER A 990 -37.46 -145.71 REMARK 500 LYS A 993 35.47 -160.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 77C A 1101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T8I RELATED DB: PDB DBREF 5T8I A 106 1044 UNP O35904 PK3CD_MOUSE 106 1043 SEQADV 5T8I GLN A 508 UNP O35904 INSERTION SEQRES 1 A 939 GLY ASP ARG VAL LYS LYS LEU ILE ASN SER GLN ILE SER SEQRES 2 A 939 LEU LEU ILE GLY LYS GLY LEU HIS GLU PHE ASP SER LEU SEQRES 3 A 939 ARG ASP PRO GLU VAL ASN ASP PHE ARG THR LYS MET ARG SEQRES 4 A 939 GLN PHE CYS GLU GLU ALA ALA ALA HIS ARG GLN GLN LEU SEQRES 5 A 939 GLY TRP VAL GLU TRP LEU GLN TYR SER PHE PRO LEU GLN SEQRES 6 A 939 LEU GLU PRO SER ALA ARG GLY TRP ARG ALA GLY LEU LEU SEQRES 7 A 939 ARG VAL SER ASN ARG ALA LEU LEU VAL ASN VAL LYS PHE SEQRES 8 A 939 GLU GLY SER GLU GLU SER PHE THR PHE GLN VAL SER THR SEQRES 9 A 939 LYS ASP MET PRO LEU ALA LEU MET ALA CYS ALA LEU ARG SEQRES 10 A 939 LYS LYS ALA THR VAL PHE ARG GLN PRO LEU VAL GLU GLN SEQRES 11 A 939 PRO GLU GLU TYR ALA LEU GLN VAL ASN GLY ARG HIS GLU SEQRES 12 A 939 TYR LEU TYR GLY ASN TYR PRO LEU CYS HIS PHE GLN TYR SEQRES 13 A 939 ILE CYS SER CYS LEU HIS SER GLY LEU THR PRO HIS LEU SEQRES 14 A 939 THR MET VAL HIS SER SER SER ILE LEU ALA MET ARG ASP SEQRES 15 A 939 GLU GLN SER ASN PRO ALA PRO GLN VAL GLN LYS PRO ARG SEQRES 16 A 939 ALA LYS PRO PRO PRO ILE PRO ALA LYS LYS PRO SER SER SEQRES 17 A 939 VAL SER LEU TRP SER LEU GLU GLN PRO PHE SER ILE GLU SEQRES 18 A 939 LEU ILE GLU GLY ARG LYS VAL ASN ALA ASP GLU ARG MET SEQRES 19 A 939 LYS LEU VAL VAL GLN ALA GLY LEU PHE HIS GLY ASN GLU SEQRES 20 A 939 MET LEU CYS LYS THR VAL SER SER SER GLU VAL ASN VAL SEQRES 21 A 939 CYS SER GLU PRO VAL TRP LYS GLN ARG LEU GLU PHE ASP SEQRES 22 A 939 ILE SER VAL CYS ASP LEU PRO ARG MET ALA ARG LEU CYS SEQRES 23 A 939 PHE ALA LEU TYR ALA VAL VAL GLU LYS ALA LYS LYS ALA SEQRES 24 A 939 ARG SER THR LYS LYS LYS SER LYS LYS ALA ASP CYS PRO SEQRES 25 A 939 ILE ALA TRP ALA ASN LEU MET LEU PHE ASP TYR LYS ASP SEQRES 26 A 939 GLN LEU LYS THR GLY GLU ARG CYS LEU TYR MET TRP PRO SEQRES 27 A 939 SER VAL PRO ASP GLU LYS GLY GLU LEU LEU ASN PRO ALA SEQRES 28 A 939 GLY THR VAL ARG GLY ASN PRO ASN THR GLU SER ALA ALA SEQRES 29 A 939 ALA LEU VAL ILE TYR LEU PRO GLU VAL ALA PRO HIS PRO SEQRES 30 A 939 VAL TYR PHE PRO ALA LEU GLU LYS ILE LEU GLU LEU GLY SEQRES 31 A 939 ARG HIS GLY GLU ARG GLY ARG ILE THR GLU GLU GLU GLN SEQRES 32 A 939 LEU GLN LEU ARG GLU ILE LEU GLU ARG ARG GLY SER GLY SEQRES 33 A 939 GLU LEU TYR GLU HIS GLU LYS ASP LEU VAL TRP LYS MET SEQRES 34 A 939 ARG HIS GLU VAL GLN GLU HIS PHE PRO GLU ALA LEU ALA SEQRES 35 A 939 ARG LEU LEU LEU VAL THR LYS TRP ASN LYS HIS GLU ASP SEQRES 36 A 939 VAL ALA GLN MET LEU TYR LEU LEU CYS SER TRP PRO GLU SEQRES 37 A 939 LEU PRO VAL LEU SER ALA LEU GLU LEU LEU ASP PHE SER SEQRES 38 A 939 PHE PRO ASP CYS TYR VAL GLY SER PHE ALA ILE LYS SER SEQRES 39 A 939 LEU ARG LYS LEU THR ASP ASP GLU LEU PHE GLN TYR LEU SEQRES 40 A 939 LEU GLN LEU VAL GLN VAL LEU LYS TYR GLU SER TYR LEU SEQRES 41 A 939 ASP CYS GLU LEU THR LYS PHE LEU LEU GLY ARG ALA LEU SEQRES 42 A 939 ALA ASN ARG LYS ILE GLY HIS PHE LEU PHE TRP HIS LEU SEQRES 43 A 939 ARG SER GLU MET HIS VAL PRO SER VAL ALA LEU ARG PHE SEQRES 44 A 939 GLY LEU ILE MET GLU ALA TYR CYS ARG GLY SER THR HIS SEQRES 45 A 939 HIS MET LYS VAL LEU MET LYS GLN GLY GLU ALA LEU SER SEQRES 46 A 939 LYS LEU LYS ALA LEU ASN ASP PHE VAL LYS VAL SER SER SEQRES 47 A 939 GLN LYS THR THR LYS PRO GLN THR LYS GLU MET MET HIS SEQRES 48 A 939 MET CYS MET ARG GLN GLU THR TYR MET GLU ALA LEU SER SEQRES 49 A 939 HIS LEU GLN SER PRO LEU ASP PRO SER THR LEU LEU GLU SEQRES 50 A 939 GLU VAL CYS VAL GLU GLN CYS THR PHE MET ASP SER LYS SEQRES 51 A 939 MET LYS PRO LEU TRP ILE MET TYR SER SER GLU GLU ALA SEQRES 52 A 939 GLY SER ALA GLY ASN VAL GLY ILE ILE PHE LYS ASN GLY SEQRES 53 A 939 ASP ASP LEU ARG GLN ASP MET LEU THR LEU GLN MET ILE SEQRES 54 A 939 GLN LEU MET ASP VAL LEU TRP LYS GLN GLU GLY LEU ASP SEQRES 55 A 939 LEU ARG MET THR PRO TYR GLY CYS LEU PRO THR GLY ASP SEQRES 56 A 939 ARG THR GLY LEU ILE GLU VAL VAL LEU HIS SER ASP THR SEQRES 57 A 939 ILE ALA ASN ILE GLN LEU ASN LYS SER ASN MET ALA ALA SEQRES 58 A 939 THR ALA ALA PHE ASN LYS ASP ALA LEU LEU ASN TRP LEU SEQRES 59 A 939 LYS SER LYS ASN PRO GLY GLU ALA LEU ASP ARG ALA ILE SEQRES 60 A 939 GLU GLU PHE THR LEU SER CYS ALA GLY TYR CYS VAL ALA SEQRES 61 A 939 THR TYR VAL LEU GLY ILE GLY ASP ARG HIS SER ASP ASN SEQRES 62 A 939 ILE MET ILE ARG GLU SER GLY GLN LEU PHE HIS ILE ASP SEQRES 63 A 939 PHE GLY HIS PHE LEU GLY ASN PHE LYS THR LYS PHE GLY SEQRES 64 A 939 ILE ASN ARG GLU ARG VAL PRO PHE ILE LEU THR TYR ASP SEQRES 65 A 939 PHE VAL HIS VAL ILE GLN GLN GLY LYS THR ASN ASN SER SEQRES 66 A 939 GLU LYS PHE GLU ARG PHE ARG GLY TYR CYS GLU ARG ALA SEQRES 67 A 939 TYR THR ILE LEU ARG ARG HIS GLY LEU LEU PHE LEU HIS SEQRES 68 A 939 LEU PHE ALA LEU MET ARG ALA ALA GLY LEU PRO GLU LEU SEQRES 69 A 939 SER CYS SER LYS ASP ILE GLN TYR LEU LYS ASP SER LEU SEQRES 70 A 939 ALA LEU GLY LYS THR GLU GLU GLU ALA LEU LYS HIS PHE SEQRES 71 A 939 ARG VAL LYS PHE ASN GLU ALA LEU ARG GLU SER TRP LYS SEQRES 72 A 939 THR LYS VAL ASN TRP LEU ALA HIS ASN VAL SER LYS ASP SEQRES 73 A 939 ASN ARG GLN HET 77C A1101 51 HETNAM 77C 2,4-DIAMINO-6-{[(S)-[5-CHLORO-8-FLUORO-4-OXO-3- HETNAM 2 77C (PYRIDIN-3-YL)-3,4-DIHYDROQUINAZOLIN-2- HETNAM 3 77C YL](CYCLOPROPYL)METHYL]AMINO}PYRIMIDINE-5-CARBONITRILE FORMUL 2 77C C22 H17 CL F N9 O HELIX 1 AA1 LYS A 110 GLY A 122 1 13 HELIX 2 AA2 LEU A 125 SER A 130 1 6 HELIX 3 AA3 ASP A 133 GLN A 155 1 23 HELIX 4 AA4 GLY A 158 PHE A 167 1 10 HELIX 5 AA5 MET A 212 ARG A 229 1 18 HELIX 6 AA6 GLN A 235 GLU A 237 5 3 HELIX 7 AA7 PRO A 255 HIS A 258 5 4 HELIX 8 AA8 PHE A 259 GLY A 269 1 11 HELIX 9 AA9 SER A 279 GLN A 289 1 11 HELIX 10 AB1 CYS A 382 LEU A 384 5 3 HELIX 11 AB2 ALA A 487 LEU A 492 1 6 HELIX 12 AB3 GLU A 493 LEU A 494 5 2 HELIX 13 AB4 LEU A 511 GLU A 516 5 6 HELIX 14 AB5 GLU A 525 LYS A 533 1 9 HELIX 15 AB6 MET A 534 PHE A 542 1 9 HELIX 16 AB7 ALA A 545 LEU A 551 1 7 HELIX 17 AB8 LYS A 557 SER A 570 1 14 HELIX 18 AB9 PRO A 575 LEU A 583 1 9 HELIX 19 AC1 ASP A 589 SER A 599 1 11 HELIX 20 AC2 THR A 604 VAL A 618 1 15 HELIX 21 AC3 LEU A 619 GLU A 622 5 4 HELIX 22 AC4 CYS A 627 LEU A 638 1 12 HELIX 23 AC5 ASN A 640 SER A 653 1 14 HELIX 24 AC6 VAL A 657 SER A 675 1 19 HELIX 25 AC7 SER A 675 THR A 706 1 32 HELIX 26 AC8 THR A 707 ARG A 720 1 14 HELIX 27 AC9 GLN A 721 SER A 729 1 9 HELIX 28 AD1 VAL A 746 CYS A 749 5 4 HELIX 29 AD2 LEU A 784 GLN A 803 1 20 HELIX 30 AD3 ILE A 834 LEU A 839 1 6 HELIX 31 AD4 PHE A 850 LYS A 852 5 3 HELIX 32 AD5 ASP A 853 ASN A 863 1 11 HELIX 33 AD6 PRO A 864 GLU A 866 5 3 HELIX 34 AD7 ALA A 867 GLY A 890 1 24 HELIX 35 AD8 ASP A 937 GLN A 943 1 7 HELIX 36 AD9 ASN A 949 ARG A 969 1 21 HELIX 37 AE1 HIS A 970 MET A 981 1 12 HELIX 38 AE2 ARG A 982 GLY A 985 5 4 HELIX 39 AE3 ILE A 995 ALA A 1003 1 9 HELIX 40 AE4 THR A 1007 ARG A 1024 1 18 SHEET 1 AA1 5 SER A 202 SER A 208 0 SHEET 2 AA1 5 ALA A 189 PHE A 196 -1 N VAL A 194 O PHE A 203 SHEET 3 AA1 5 HIS A 273 HIS A 278 1 O LEU A 274 N ASN A 193 SHEET 4 AA1 5 TYR A 239 VAL A 243 -1 N GLN A 242 O THR A 275 SHEET 5 AA1 5 TYR A 249 LEU A 250 -1 O LEU A 250 N LEU A 241 SHEET 1 AA2 4 VAL A 370 SER A 380 0 SHEET 2 AA2 4 PRO A 322 ARG A 331 -1 N ILE A 328 O TRP A 371 SHEET 3 AA2 4 ALA A 470 LEU A 475 -1 O TYR A 474 N GLU A 326 SHEET 4 AA2 4 GLY A 435 TYR A 440 -1 N GLY A 435 O LEU A 475 SHEET 1 AA3 3 VAL A 358 SER A 359 0 SHEET 2 AA3 3 LYS A 340 PHE A 348 -1 N ALA A 345 O VAL A 358 SHEET 3 AA3 3 VAL A 363 ASN A 364 -1 O VAL A 363 N LEU A 341 SHEET 1 AA4 5 VAL A 358 SER A 359 0 SHEET 2 AA4 5 LYS A 340 PHE A 348 -1 N ALA A 345 O VAL A 358 SHEET 3 AA4 5 ARG A 389 VAL A 397 -1 O CYS A 391 N GLY A 346 SHEET 4 AA4 5 PRO A 417 MET A 424 -1 O ALA A 421 N PHE A 392 SHEET 5 AA4 5 TRP A 442 PRO A 443 -1 O TRP A 442 N TRP A 420 SHEET 1 AA5 2 LEU A 731 SER A 733 0 SHEET 2 AA5 2 ASP A 736 LEU A 741 -1 O LEU A 741 N LEU A 731 SHEET 1 AA6 3 GLU A 743 VAL A 744 0 SHEET 2 AA6 3 LEU A 759 SER A 764 -1 O SER A 764 N GLU A 743 SHEET 3 AA6 3 THR A 750 PHE A 751 -1 N THR A 750 O TRP A 760 SHEET 1 AA7 5 GLU A 743 VAL A 744 0 SHEET 2 AA7 5 LEU A 759 SER A 764 -1 O SER A 764 N GLU A 743 SHEET 3 AA7 5 GLY A 775 ASN A 780 -1 O ILE A 776 N ILE A 761 SHEET 4 AA7 5 THR A 822 GLU A 826 -1 O ILE A 825 N ILE A 777 SHEET 5 AA7 5 CYS A 815 GLY A 819 -1 N THR A 818 O THR A 822 SHEET 1 AA8 3 SER A 831 THR A 833 0 SHEET 2 AA8 3 ILE A 899 ARG A 902 -1 O ILE A 901 N ASP A 832 SHEET 3 AA8 3 LEU A 907 HIS A 909 -1 O PHE A 908 N MET A 900 CISPEP 1 SER A 367 GLU A 368 0 14.10 CISPEP 2 THR A 434 GLY A 435 0 2.19 SITE 1 AC1 14 PHE A 751 MET A 752 PRO A 758 LEU A 759 SITE 2 AC1 14 TRP A 760 ILE A 777 ILE A 825 GLU A 826 SITE 3 AC1 14 VAL A 828 SER A 831 ASP A 832 ASN A 836 SITE 4 AC1 14 MET A 900 ILE A 910 CRYST1 64.045 142.197 222.590 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015614 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004493 0.00000