HEADER TRANSCRIPTION 08-SEP-16 5T8R TITLE CRYSTAL STRUCTURE OF HUMAN BAZ2A PHD ZINC FINGER IN COMPLEX WITH TITLE 2 UNMODIFIED H3 10-MER COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PHD DOMAIN, UNP RESIDUES 1673-1728; COMPND 5 SYNONYM: TRANSCRIPTION TERMINATION FACTOR I-INTERACTING PROTEIN 5, COMPND 6 TIP5,HWALP3; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H3.1; COMPND 10 CHAIN: E, G; COMPND 11 FRAGMENT: UNP RESIDUES 2-11; COMPND 12 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 13 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 14 H3/L; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAZ2A, KIAA0314, TIP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PHD ZINC FINGERS, HISTONE3, COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.AMATO,M.S.GADD,A.BORTOLUZZI,A.CIULLI REVDAT 3 17-JAN-24 5T8R 1 REMARK REVDAT 2 17-MAY-17 5T8R 1 JRNL REVDAT 1 05-APR-17 5T8R 0 JRNL AUTH A.BORTOLUZZI,A.AMATO,X.LUCAS,M.BLANK,A.CIULLI JRNL TITL STRUCTURAL BASIS OF MOLECULAR RECOGNITION OF HELICAL HISTONE JRNL TITL 2 H3 TAIL BY PHD FINGER DOMAINS. JRNL REF BIOCHEM. J. V. 474 1633 2017 JRNL REFN ESSN 1470-8728 JRNL PMID 28341809 JRNL DOI 10.1042/BCJ20161053 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 10309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 556 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 769 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : 0.58000 REMARK 3 B33 (A**2) : -1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.365 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.647 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1815 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1663 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2438 ; 1.510 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3793 ; 1.123 ; 3.015 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 221 ; 6.120 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;31.663 ;23.827 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 294 ;14.333 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.299 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 266 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1992 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 401 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 902 ; 1.609 ; 3.900 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 901 ; 1.608 ; 3.895 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1117 ; 2.840 ; 5.813 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1676 A 1728 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7590 32.9030 19.7190 REMARK 3 T TENSOR REMARK 3 T11: 0.0507 T22: 0.1140 REMARK 3 T33: 0.0205 T12: 0.0425 REMARK 3 T13: 0.0184 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 5.4857 L22: 6.5291 REMARK 3 L33: 5.5275 L12: -2.9079 REMARK 3 L13: 2.6119 L23: -1.8182 REMARK 3 S TENSOR REMARK 3 S11: 0.1546 S12: 0.3396 S13: -0.1716 REMARK 3 S21: -0.3067 S22: -0.2212 S23: -0.1134 REMARK 3 S31: 0.2771 S32: 0.4785 S33: 0.0666 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1676 B 1726 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3650 24.6610 45.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.0103 T22: 0.0709 REMARK 3 T33: 0.0401 T12: 0.0203 REMARK 3 T13: -0.0116 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 5.3121 L22: 5.7878 REMARK 3 L33: 6.8676 L12: -0.5201 REMARK 3 L13: -0.8122 L23: 0.3171 REMARK 3 S TENSOR REMARK 3 S11: -0.0987 S12: -0.5323 S13: 0.1546 REMARK 3 S21: 0.1420 S22: 0.0829 S23: -0.4637 REMARK 3 S31: 0.2110 S32: 0.4247 S33: 0.0158 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1676 C 1727 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3920 38.6760 34.5630 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: 0.0509 REMARK 3 T33: 0.0206 T12: 0.0244 REMARK 3 T13: -0.0116 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.3023 L22: 6.5595 REMARK 3 L33: 6.0671 L12: 1.5041 REMARK 3 L13: -1.0636 L23: -2.1300 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.1642 S13: -0.0058 REMARK 3 S21: 0.2082 S22: 0.0569 S23: -0.2871 REMARK 3 S31: 0.1219 S32: 0.3274 S33: -0.0444 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1676 D 1728 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7480 23.5420 30.2130 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.0391 REMARK 3 T33: 0.0390 T12: -0.0355 REMARK 3 T13: 0.0559 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 5.7433 L22: 4.8077 REMARK 3 L33: 8.7142 L12: 2.3675 REMARK 3 L13: -3.4096 L23: -5.3647 REMARK 3 S TENSOR REMARK 3 S11: -0.2673 S12: 0.3346 S13: 0.0695 REMARK 3 S21: -0.4956 S22: 0.0795 S23: -0.2808 REMARK 3 S31: 0.3999 S32: 0.0604 S33: 0.1879 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5T8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000219259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 - 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10901 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.78200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4QF2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M NA/K PHOSPHATE, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.71550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.30350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.30350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.57325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.30350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.30350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.85775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.30350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.30350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.57325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.30350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.30350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.85775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.71550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1671 REMARK 465 MET A 1672 REMARK 465 SER A 1673 REMARK 465 VAL A 1674 REMARK 465 HIS B 1671 REMARK 465 MET B 1672 REMARK 465 SER B 1673 REMARK 465 VAL B 1674 REMARK 465 ASN B 1675 REMARK 465 GLN B 1727 REMARK 465 VAL B 1728 REMARK 465 HIS C 1671 REMARK 465 MET C 1672 REMARK 465 SER C 1673 REMARK 465 VAL C 1674 REMARK 465 VAL C 1728 REMARK 465 HIS D 1671 REMARK 465 MET D 1672 REMARK 465 SER D 1673 REMARK 465 VAL D 1674 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 LYS G 9 REMARK 465 SER G 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1676 CG CD CE NZ REMARK 470 LYS B1676 CG CD CE NZ REMARK 470 GLU C1715 CG CD OE1 OE2 REMARK 470 GLN C1727 CG CD OE1 NE2 REMARK 470 GLU D1689 CG CD OE1 OE2 REMARK 470 ARG E 2 CG CD NE CZ NH1 NH2 REMARK 470 GLN E 5 CG CD OE1 NE2 REMARK 470 ARG G 8 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C1676 69.37 62.46 REMARK 500 LYS D1676 45.37 -98.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1921 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1679 SG REMARK 620 2 CYS A1682 SG 108.6 REMARK 620 3 HIS A1702 ND1 100.7 99.0 REMARK 620 4 CYS A1705 SG 115.9 111.6 119.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1694 SG REMARK 620 2 CYS A1697 SG 111.1 REMARK 620 3 CYS A1720 SG 112.5 104.6 REMARK 620 4 CYS A1723 SG 98.6 112.4 117.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1679 SG REMARK 620 2 CYS B1682 SG 109.9 REMARK 620 3 HIS B1702 ND1 103.9 98.7 REMARK 620 4 CYS B1705 SG 118.6 111.7 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1694 SG REMARK 620 2 CYS B1697 SG 105.9 REMARK 620 3 CYS B1720 SG 114.2 109.4 REMARK 620 4 CYS B1723 SG 97.4 112.9 116.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1679 SG REMARK 620 2 CYS C1682 SG 105.8 REMARK 620 3 HIS C1702 ND1 105.5 101.3 REMARK 620 4 CYS C1705 SG 116.9 110.9 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1694 SG REMARK 620 2 CYS C1697 SG 109.3 REMARK 620 3 CYS C1720 SG 112.0 106.7 REMARK 620 4 CYS C1723 SG 102.1 110.8 115.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D1679 SG REMARK 620 2 CYS D1682 SG 107.8 REMARK 620 3 HIS D1702 ND1 103.3 103.9 REMARK 620 4 CYS D1705 SG 113.3 113.7 114.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D1694 SG REMARK 620 2 CYS D1697 SG 114.0 REMARK 620 3 CYS D1720 SG 111.8 102.6 REMARK 620 4 CYS D1723 SG 96.8 112.9 119.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 1802 DBREF 5T8R A 1673 1728 UNP Q9UIF9 BAZ2A_HUMAN 1673 1728 DBREF 5T8R B 1673 1728 UNP Q9UIF9 BAZ2A_HUMAN 1673 1728 DBREF 5T8R C 1673 1728 UNP Q9UIF9 BAZ2A_HUMAN 1673 1728 DBREF 5T8R D 1673 1728 UNP Q9UIF9 BAZ2A_HUMAN 1673 1728 DBREF 5T8R E 1 10 UNP P68431 H31_HUMAN 2 11 DBREF 5T8R G 1 10 UNP P68431 H31_HUMAN 2 11 SEQADV 5T8R HIS A 1671 UNP Q9UIF9 EXPRESSION TAG SEQADV 5T8R MET A 1672 UNP Q9UIF9 EXPRESSION TAG SEQADV 5T8R HIS B 1671 UNP Q9UIF9 EXPRESSION TAG SEQADV 5T8R MET B 1672 UNP Q9UIF9 EXPRESSION TAG SEQADV 5T8R HIS C 1671 UNP Q9UIF9 EXPRESSION TAG SEQADV 5T8R MET C 1672 UNP Q9UIF9 EXPRESSION TAG SEQADV 5T8R HIS D 1671 UNP Q9UIF9 EXPRESSION TAG SEQADV 5T8R MET D 1672 UNP Q9UIF9 EXPRESSION TAG SEQRES 1 A 58 HIS MET SER VAL ASN LYS VAL THR CYS LEU VAL CYS ARG SEQRES 2 A 58 LYS GLY ASP ASN ASP GLU PHE LEU LEU LEU CYS ASP GLY SEQRES 3 A 58 CYS ASP ARG GLY CYS HIS ILE TYR CYS HIS ARG PRO LYS SEQRES 4 A 58 MET GLU ALA VAL PRO GLU GLY ASP TRP PHE CYS THR VAL SEQRES 5 A 58 CYS LEU ALA GLN GLN VAL SEQRES 1 B 58 HIS MET SER VAL ASN LYS VAL THR CYS LEU VAL CYS ARG SEQRES 2 B 58 LYS GLY ASP ASN ASP GLU PHE LEU LEU LEU CYS ASP GLY SEQRES 3 B 58 CYS ASP ARG GLY CYS HIS ILE TYR CYS HIS ARG PRO LYS SEQRES 4 B 58 MET GLU ALA VAL PRO GLU GLY ASP TRP PHE CYS THR VAL SEQRES 5 B 58 CYS LEU ALA GLN GLN VAL SEQRES 1 C 58 HIS MET SER VAL ASN LYS VAL THR CYS LEU VAL CYS ARG SEQRES 2 C 58 LYS GLY ASP ASN ASP GLU PHE LEU LEU LEU CYS ASP GLY SEQRES 3 C 58 CYS ASP ARG GLY CYS HIS ILE TYR CYS HIS ARG PRO LYS SEQRES 4 C 58 MET GLU ALA VAL PRO GLU GLY ASP TRP PHE CYS THR VAL SEQRES 5 C 58 CYS LEU ALA GLN GLN VAL SEQRES 1 D 58 HIS MET SER VAL ASN LYS VAL THR CYS LEU VAL CYS ARG SEQRES 2 D 58 LYS GLY ASP ASN ASP GLU PHE LEU LEU LEU CYS ASP GLY SEQRES 3 D 58 CYS ASP ARG GLY CYS HIS ILE TYR CYS HIS ARG PRO LYS SEQRES 4 D 58 MET GLU ALA VAL PRO GLU GLY ASP TRP PHE CYS THR VAL SEQRES 5 D 58 CYS LEU ALA GLN GLN VAL SEQRES 1 E 10 ALA ARG THR LYS GLN THR ALA ARG LYS SER SEQRES 1 G 10 ALA ARG THR LYS GLN THR ALA ARG LYS SER HET ZN A1801 1 HET ZN A1802 1 HET PO4 A1803 5 HET ZN B1801 1 HET ZN B1802 1 HET PO4 B1803 5 HET ZN C1801 1 HET ZN C1802 1 HET GOL C1803 6 HET ZN D1801 1 HET ZN D1802 1 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 ZN 8(ZN 2+) FORMUL 9 PO4 2(O4 P 3-) FORMUL 15 GOL C3 H8 O3 FORMUL 18 HOH *96(H2 O) HELIX 1 AA1 ASN A 1687 GLU A 1689 5 3 HELIX 2 AA2 TYR A 1704 HIS A 1706 5 3 HELIX 3 AA3 CYS A 1720 GLN A 1727 1 8 HELIX 4 AA4 ASN B 1687 GLU B 1689 5 3 HELIX 5 AA5 TYR B 1704 HIS B 1706 5 3 HELIX 6 AA6 CYS B 1720 GLN B 1726 1 7 HELIX 7 AA7 ASN C 1687 GLU C 1689 5 3 HELIX 8 AA8 CYS C 1720 ALA C 1725 1 6 HELIX 9 AA9 CYS D 1720 ALA D 1725 1 6 HELIX 10 AB1 THR G 3 ARG G 8 1 6 SHEET 1 AA1 2 LEU A1691 LEU A1693 0 SHEET 2 AA1 2 GLY A1700 HIS A1702 -1 O CYS A1701 N LEU A1692 SHEET 1 AA2 2 LEU B1691 LEU B1693 0 SHEET 2 AA2 2 GLY B1700 HIS B1702 -1 O CYS B1701 N LEU B1692 SHEET 1 AA3 2 LEU C1691 LEU C1693 0 SHEET 2 AA3 2 GLY C1700 HIS C1702 -1 O CYS C1701 N LEU C1692 SHEET 1 AA4 2 LEU D1691 LEU D1693 0 SHEET 2 AA4 2 GLY D1700 HIS D1702 -1 O CYS D1701 N LEU D1692 LINK SG CYS A1679 ZN ZN A1801 1555 1555 2.32 LINK SG CYS A1682 ZN ZN A1801 1555 1555 2.31 LINK SG CYS A1694 ZN ZN A1802 1555 1555 2.31 LINK SG CYS A1697 ZN ZN A1802 1555 1555 2.30 LINK ND1 HIS A1702 ZN ZN A1801 1555 1555 2.08 LINK SG CYS A1705 ZN ZN A1801 1555 1555 2.30 LINK SG CYS A1720 ZN ZN A1802 1555 1555 2.34 LINK SG CYS A1723 ZN ZN A1802 1555 1555 2.33 LINK SG CYS B1679 ZN ZN B1801 1555 1555 2.32 LINK SG CYS B1682 ZN ZN B1801 1555 1555 2.36 LINK SG CYS B1694 ZN ZN B1802 1555 1555 2.33 LINK SG CYS B1697 ZN ZN B1802 1555 1555 2.33 LINK ND1 HIS B1702 ZN ZN B1801 1555 1555 2.09 LINK SG CYS B1705 ZN ZN B1801 1555 1555 2.33 LINK SG CYS B1720 ZN ZN B1802 1555 1555 2.35 LINK SG CYS B1723 ZN ZN B1802 1555 1555 2.35 LINK SG CYS C1679 ZN ZN C1801 1555 1555 2.33 LINK SG CYS C1682 ZN ZN C1801 1555 1555 2.31 LINK SG CYS C1694 ZN ZN C1802 1555 1555 2.32 LINK SG CYS C1697 ZN ZN C1802 1555 1555 2.31 LINK ND1 HIS C1702 ZN ZN C1801 1555 1555 2.06 LINK SG CYS C1705 ZN ZN C1801 1555 1555 2.31 LINK SG CYS C1720 ZN ZN C1802 1555 1555 2.34 LINK SG CYS C1723 ZN ZN C1802 1555 1555 2.35 LINK SG CYS D1679 ZN ZN D1801 1555 1555 2.33 LINK SG CYS D1682 ZN ZN D1801 1555 1555 2.32 LINK SG CYS D1694 ZN ZN D1802 1555 1555 2.30 LINK SG CYS D1697 ZN ZN D1802 1555 1555 2.29 LINK ND1 HIS D1702 ZN ZN D1801 1555 1555 2.15 LINK SG CYS D1705 ZN ZN D1801 1555 1555 2.32 LINK SG CYS D1720 ZN ZN D1802 1555 1555 2.35 LINK SG CYS D1723 ZN ZN D1802 1555 1555 2.35 CISPEP 1 ARG A 1707 PRO A 1708 0 3.25 CISPEP 2 ARG B 1707 PRO B 1708 0 9.31 CISPEP 3 ARG C 1707 PRO C 1708 0 1.16 CISPEP 4 ARG D 1707 PRO D 1708 0 6.13 SITE 1 AC1 4 CYS A1679 CYS A1682 HIS A1702 CYS A1705 SITE 1 AC2 4 CYS A1694 CYS A1697 CYS A1720 CYS A1723 SITE 1 AC3 5 ARG A1707 HOH A1904 HOH A1912 HOH A1913 SITE 2 AC3 5 HOH A1917 SITE 1 AC4 4 CYS B1679 CYS B1682 HIS B1702 CYS B1705 SITE 1 AC5 4 CYS B1694 CYS B1697 CYS B1720 CYS B1723 SITE 1 AC6 2 ARG B1707 HOH B1910 SITE 1 AC7 4 CYS C1679 CYS C1682 HIS C1702 CYS C1705 SITE 1 AC8 4 CYS C1694 CYS C1697 CYS C1720 CYS C1723 SITE 1 AC9 2 ARG C1707 HOH C1920 SITE 1 AD1 4 CYS D1679 CYS D1682 HIS D1702 CYS D1705 SITE 1 AD2 4 CYS D1694 CYS D1697 CYS D1720 CYS D1723 CRYST1 72.607 72.607 99.431 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013773 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010057 0.00000