HEADER OXIDOREDUCTASE 08-SEP-16 5T8X OBSLTE 02-AUG-17 5T8X 5WHX TITLE PREPHENATE DEHYDROGENASE FROM SOYBEAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPHENATE DEHYDROGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 5 EC: 1.3.1.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: PDH1, GLYMA_18G023100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DEHYDROGENASE, TYROSINE BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.K.HOLLAND,J.M.JEZ REVDAT 2 02-AUG-17 5T8X 1 OBSLTE REVDAT 1 28-JUN-17 5T8X 0 JRNL AUTH C.K.HOLLAND,C.A.SCHENCK,M.SCHNEIDER,Y.MEN,S.G.LEE,J.M.JEZ, JRNL AUTH 2 H.A.MAEDA JRNL TITL MOLECULAR BASIS OF TYRA SUBSTRATE SPECIFICITY UNDERLYING THE JRNL TITL 2 EVOLUTION OF TWO ALTERNATIVE TYROSINE BIOSYNTHETIC PATHWAYS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.930 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 63602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.4114 - 4.8098 0.98 2707 155 0.1536 0.1697 REMARK 3 2 4.8098 - 3.8197 0.97 2677 142 0.1218 0.1418 REMARK 3 3 3.8197 - 3.3374 0.97 2711 134 0.1303 0.1601 REMARK 3 4 3.3374 - 3.0325 0.97 2677 141 0.1403 0.1541 REMARK 3 5 3.0325 - 2.8153 0.97 2704 155 0.1540 0.1828 REMARK 3 6 2.8153 - 2.6494 0.97 2694 129 0.1606 0.2053 REMARK 3 7 2.6494 - 2.5167 0.97 2649 159 0.1558 0.1664 REMARK 3 8 2.5167 - 2.4072 0.97 2700 136 0.1480 0.1802 REMARK 3 9 2.4072 - 2.3146 0.96 2678 127 0.1516 0.1803 REMARK 3 10 2.3146 - 2.2347 0.96 2681 138 0.1482 0.1633 REMARK 3 11 2.2347 - 2.1649 0.96 2663 137 0.1518 0.2024 REMARK 3 12 2.1649 - 2.1030 0.96 2671 133 0.1595 0.1685 REMARK 3 13 2.1030 - 2.0476 0.95 2635 127 0.1600 0.2064 REMARK 3 14 2.0476 - 1.9977 0.95 2628 139 0.1668 0.2130 REMARK 3 15 1.9977 - 1.9523 0.95 2665 136 0.1731 0.2332 REMARK 3 16 1.9523 - 1.9107 0.95 2651 130 0.1759 0.2411 REMARK 3 17 1.9107 - 1.8725 0.95 2635 152 0.1837 0.2324 REMARK 3 18 1.8725 - 1.8372 0.94 2535 133 0.1837 0.2358 REMARK 3 19 1.8372 - 1.8044 0.93 2665 119 0.1966 0.2441 REMARK 3 20 1.8044 - 1.7738 0.93 2528 161 0.2067 0.2182 REMARK 3 21 1.7738 - 1.7452 0.93 2583 145 0.2060 0.2386 REMARK 3 22 1.7452 - 1.7183 0.93 2574 129 0.2157 0.2327 REMARK 3 23 1.7183 - 1.6931 0.76 2128 106 0.2149 0.2601 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4338 REMARK 3 ANGLE : 1.171 5902 REMARK 3 CHIRALITY : 0.042 678 REMARK 3 PLANARITY : 0.005 743 REMARK 3 DIHEDRAL : 13.750 1634 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8060 -44.5786 -33.0478 REMARK 3 T TENSOR REMARK 3 T11: 0.1068 T22: 0.1224 REMARK 3 T33: 0.1217 T12: 0.0069 REMARK 3 T13: 0.0048 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.7422 L22: 0.8981 REMARK 3 L33: 1.6932 L12: 0.2268 REMARK 3 L13: 0.4851 L23: 0.3693 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.1477 S13: 0.0533 REMARK 3 S21: -0.0629 S22: 0.0254 S23: -0.0546 REMARK 3 S31: -0.1001 S32: 0.0846 S33: 0.0112 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1968 -55.7053 -14.5757 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.1320 REMARK 3 T33: 0.1338 T12: 0.0192 REMARK 3 T13: 0.0037 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 0.1129 L22: 3.0637 REMARK 3 L33: 3.1831 L12: -0.0552 REMARK 3 L13: -0.0396 L23: -2.4354 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: 0.0235 S13: 0.0121 REMARK 3 S21: 0.0741 S22: -0.0671 S23: -0.1254 REMARK 3 S31: -0.0025 S32: 0.0568 S33: 0.0927 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0795 -33.0704 1.8817 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.1157 REMARK 3 T33: 0.1183 T12: 0.0058 REMARK 3 T13: 0.0091 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.0848 L22: 2.2222 REMARK 3 L33: 1.4727 L12: -0.0279 REMARK 3 L13: 0.2368 L23: 0.7372 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: -0.0901 S13: -0.0921 REMARK 3 S21: 0.2619 S22: -0.0086 S23: -0.0143 REMARK 3 S31: 0.1587 S32: -0.0371 S33: 0.0082 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 184 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8266 -8.2261 -13.0258 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.1650 REMARK 3 T33: 0.1777 T12: 0.0151 REMARK 3 T13: -0.0256 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.0015 L22: 1.4756 REMARK 3 L33: 2.5662 L12: 0.7321 REMARK 3 L13: -0.8421 L23: -1.4412 REMARK 3 S TENSOR REMARK 3 S11: -0.1386 S12: 0.0367 S13: -0.1213 REMARK 3 S21: -0.0147 S22: 0.0631 S23: 0.0072 REMARK 3 S31: 0.2067 S32: -0.0501 S33: 0.0800 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64687 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 32.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 1.960 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.04000 REMARK 200 FOR THE DATA SET : 13.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5T9E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-4000 AND 100 MM SODIUM REMARK 280 CITRATE, PH 5.5 WITH 30% (W/V) D-SORBITOL AS AN ADDITIVE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 GLN A 258 REMARK 465 ARG A 259 REMARK 465 THR A 260 REMARK 465 ASN A 261 REMARK 465 GLY A 262 REMARK 465 GLU A 263 REMARK 465 GLN A 264 REMARK 465 GLY A 265 REMARK 465 HIS A 266 REMARK 465 LYS A 267 REMARK 465 ARG A 268 REMARK 465 THR A 269 REMARK 465 GLU A 270 REMARK 465 SER A 271 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 SER B 7 REMARK 465 ASN B 261 REMARK 465 GLY B 262 REMARK 465 GLU B 263 REMARK 465 GLN B 264 REMARK 465 GLY B 265 REMARK 465 HIS B 266 REMARK 465 LYS B 267 REMARK 465 ARG B 268 REMARK 465 THR B 269 REMARK 465 GLU B 270 REMARK 465 SER B 271 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 108 NH1 ARG A 112 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 228 CA - C - O ANGL. DEV. = 14.9 DEGREES REMARK 500 SER A 228 CA - C - O ANGL. DEV. = 18.3 DEGREES REMARK 500 SER A 228 CA - C - N ANGL. DEV. = -14.9 DEGREES REMARK 500 SER A 228 CA - C - N ANGL. DEV. = -18.4 DEGREES REMARK 500 ARG B 56 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 221 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 17 50.05 -90.63 REMARK 500 MET A 126 45.07 -86.37 REMARK 500 SER A 183 -75.65 -124.35 REMARK 500 PHE B 17 48.31 -97.10 REMARK 500 MET B 126 46.09 -82.60 REMARK 500 SER B 183 -75.83 -125.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 88 -16.62 REMARK 500 THR A 88 -16.99 REMARK 500 GLN A 200 -10.45 REMARK 500 GLN A 200 -10.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 647 DISTANCE = 6.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T9E RELATED DB: PDB REMARK 900 RELATED ID: 5T95 RELATED DB: PDB REMARK 900 RELATED ID: 5T9F RELATED DB: PDB DBREF 5T8X A 1 271 UNP I1MYY4 I1MYY4_SOYBN 1 271 DBREF 5T8X B 1 271 UNP I1MYY4 I1MYY4_SOYBN 1 271 SEQRES 1 A 271 MET SER THR SER SER SER SER GLN SER LEU LYS ILE GLY SEQRES 2 A 271 ILE VAL GLY PHE GLY ASN PHE GLY GLN PHE LEU ALA LYS SEQRES 3 A 271 THR MET ILE LYS GLN GLY HIS THR LEU THR ALA THR SER SEQRES 4 A 271 ARG SER ASP TYR SER GLU LEU CYS LEU GLN MET GLY ILE SEQRES 5 A 271 HIS PHE PHE ARG ASP VAL SER ALA PHE LEU THR ALA ASP SEQRES 6 A 271 ILE ASP VAL ILE VAL LEU CYS THR SER ILE LEU SER LEU SEQRES 7 A 271 SER GLU VAL VAL GLY SER MET PRO LEU THR SER LEU LYS SEQRES 8 A 271 ARG PRO THR LEU PHE VAL ASP VAL LEU SER VAL LYS GLU SEQRES 9 A 271 HIS PRO ARG GLU LEU LEU LEU ARG GLU LEU PRO GLU ASP SEQRES 10 A 271 SER ASP ILE LEU CYS THR HIS PRO MET PHE GLY PRO GLN SEQRES 11 A 271 THR ALA LYS ASN GLY TRP THR ASP HIS THR PHE MET TYR SEQRES 12 A 271 ASP LYS VAL ARG ILE ARG ASP GLU VAL ILE CYS SER ASN SEQRES 13 A 271 PHE ILE GLN ILE PHE ALA THR GLU GLY CYS LYS MET VAL SEQRES 14 A 271 GLN MET SER CYS GLU GLU HIS ASP ARG ALA ALA ALA LYS SEQRES 15 A 271 SER GLN PHE ILE THR HIS THR ILE GLY ARG THR LEU GLY SEQRES 16 A 271 GLU MET ASP ILE GLN SER THR PRO ILE ASP THR LYS GLY SEQRES 17 A 271 PHE GLU THR LEU VAL LYS LEU LYS GLU THR MET MET ARG SEQRES 18 A 271 ASN SER PHE ASP LEU TYR SER GLY LEU PHE VAL TYR ASN SEQRES 19 A 271 ARG PHE ALA ARG GLN GLU LEU GLU ASN LEU GLU HIS ALA SEQRES 20 A 271 LEU HIS LYS VAL LYS GLU THR LEU MET ILE GLN ARG THR SEQRES 21 A 271 ASN GLY GLU GLN GLY HIS LYS ARG THR GLU SER SEQRES 1 B 271 MET SER THR SER SER SER SER GLN SER LEU LYS ILE GLY SEQRES 2 B 271 ILE VAL GLY PHE GLY ASN PHE GLY GLN PHE LEU ALA LYS SEQRES 3 B 271 THR MET ILE LYS GLN GLY HIS THR LEU THR ALA THR SER SEQRES 4 B 271 ARG SER ASP TYR SER GLU LEU CYS LEU GLN MET GLY ILE SEQRES 5 B 271 HIS PHE PHE ARG ASP VAL SER ALA PHE LEU THR ALA ASP SEQRES 6 B 271 ILE ASP VAL ILE VAL LEU CYS THR SER ILE LEU SER LEU SEQRES 7 B 271 SER GLU VAL VAL GLY SER MET PRO LEU THR SER LEU LYS SEQRES 8 B 271 ARG PRO THR LEU PHE VAL ASP VAL LEU SER VAL LYS GLU SEQRES 9 B 271 HIS PRO ARG GLU LEU LEU LEU ARG GLU LEU PRO GLU ASP SEQRES 10 B 271 SER ASP ILE LEU CYS THR HIS PRO MET PHE GLY PRO GLN SEQRES 11 B 271 THR ALA LYS ASN GLY TRP THR ASP HIS THR PHE MET TYR SEQRES 12 B 271 ASP LYS VAL ARG ILE ARG ASP GLU VAL ILE CYS SER ASN SEQRES 13 B 271 PHE ILE GLN ILE PHE ALA THR GLU GLY CYS LYS MET VAL SEQRES 14 B 271 GLN MET SER CYS GLU GLU HIS ASP ARG ALA ALA ALA LYS SEQRES 15 B 271 SER GLN PHE ILE THR HIS THR ILE GLY ARG THR LEU GLY SEQRES 16 B 271 GLU MET ASP ILE GLN SER THR PRO ILE ASP THR LYS GLY SEQRES 17 B 271 PHE GLU THR LEU VAL LYS LEU LYS GLU THR MET MET ARG SEQRES 18 B 271 ASN SER PHE ASP LEU TYR SER GLY LEU PHE VAL TYR ASN SEQRES 19 B 271 ARG PHE ALA ARG GLN GLU LEU GLU ASN LEU GLU HIS ALA SEQRES 20 B 271 LEU HIS LYS VAL LYS GLU THR LEU MET ILE GLN ARG THR SEQRES 21 B 271 ASN GLY GLU GLN GLY HIS LYS ARG THR GLU SER HET NAP B 301 48 HET CIT B 302 13 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM CIT CITRIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *529(H2 O) HELIX 1 AA1 GLY A 18 GLN A 31 1 14 HELIX 2 AA2 TYR A 43 GLY A 51 1 9 HELIX 3 AA3 ASP A 57 THR A 63 1 7 HELIX 4 AA4 SER A 77 SER A 84 1 8 HELIX 5 AA5 MET A 85 LEU A 90 5 6 HELIX 6 AA6 LYS A 103 LEU A 114 1 12 HELIX 7 AA7 ASP A 150 THR A 163 1 14 HELIX 8 AA8 SER A 172 SER A 183 1 12 HELIX 9 AA9 SER A 183 MET A 197 1 15 HELIX 10 AB1 THR A 206 MET A 220 1 15 HELIX 11 AB2 SER A 223 TYR A 233 1 11 HELIX 12 AB3 PHE A 236 ILE A 257 1 22 HELIX 13 AB4 GLY B 18 GLN B 31 1 14 HELIX 14 AB5 TYR B 43 GLY B 51 1 9 HELIX 15 AB6 ASP B 57 THR B 63 1 7 HELIX 16 AB7 SER B 77 SER B 84 1 8 HELIX 17 AB8 PRO B 86 LEU B 90 5 5 HELIX 18 AB9 LYS B 103 LEU B 114 1 12 HELIX 19 AC1 ASP B 150 THR B 163 1 14 HELIX 20 AC2 SER B 172 SER B 183 1 12 HELIX 21 AC3 SER B 183 ASP B 198 1 16 HELIX 22 AC4 THR B 206 ARG B 221 1 16 HELIX 23 AC5 SER B 223 TYR B 233 1 11 HELIX 24 AC6 PHE B 236 THR B 260 1 25 SHEET 1 AA1 8 HIS A 53 PHE A 55 0 SHEET 2 AA1 8 THR A 34 THR A 38 1 N ALA A 37 O PHE A 55 SHEET 3 AA1 8 LYS A 11 VAL A 15 1 N ILE A 14 O THR A 36 SHEET 4 AA1 8 VAL A 68 LEU A 71 1 O VAL A 70 N VAL A 15 SHEET 5 AA1 8 LEU A 95 ASP A 98 1 O VAL A 97 N LEU A 71 SHEET 6 AA1 8 ASP A 119 PRO A 125 1 O ASP A 119 N PHE A 96 SHEET 7 AA1 8 THR A 140 ARG A 147 -1 O MET A 142 N HIS A 124 SHEET 8 AA1 8 LYS A 167 GLN A 170 1 O VAL A 169 N PHE A 141 SHEET 1 AA2 8 HIS B 53 PHE B 55 0 SHEET 2 AA2 8 THR B 34 THR B 38 1 N ALA B 37 O PHE B 55 SHEET 3 AA2 8 LYS B 11 VAL B 15 1 N ILE B 14 O THR B 36 SHEET 4 AA2 8 VAL B 68 LEU B 71 1 O VAL B 70 N GLY B 13 SHEET 5 AA2 8 LEU B 95 ASP B 98 1 O VAL B 97 N LEU B 71 SHEET 6 AA2 8 ILE B 120 PRO B 125 1 O LEU B 121 N PHE B 96 SHEET 7 AA2 8 THR B 140 ARG B 147 -1 O ARG B 147 N ILE B 120 SHEET 8 AA2 8 LYS B 167 GLN B 170 1 O VAL B 169 N PHE B 141 SITE 1 AC1 35 GLY B 16 PHE B 17 GLY B 18 ASN B 19 SITE 2 AC1 35 PHE B 20 SER B 39 ARG B 40 SER B 41 SITE 3 AC1 35 TYR B 43 CYS B 72 THR B 73 SER B 74 SITE 4 AC1 35 ILE B 75 SER B 77 GLU B 80 VAL B 81 SITE 5 AC1 35 VAL B 99 LEU B 100 SER B 101 PRO B 125 SITE 6 AC1 35 PHE B 127 GLY B 128 PRO B 129 SER B 223 SITE 7 AC1 35 CIT B 302 HOH B 410 HOH B 432 HOH B 448 SITE 8 AC1 35 HOH B 456 HOH B 470 HOH B 471 HOH B 509 SITE 9 AC1 35 HOH B 515 HOH B 537 HOH B 566 SITE 1 AC2 15 THR A 206 HOH A 445 HOH A 469 SER B 101 SITE 2 AC2 15 HIS B 124 MET B 126 PHE B 127 GLN B 130 SITE 3 AC2 15 GLN B 184 HIS B 188 MET B 219 ASN B 222 SITE 4 AC2 15 NAP B 301 HOH B 470 HOH B 501 CRYST1 46.002 55.275 67.942 107.44 98.91 103.23 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021738 0.005113 0.005536 0.00000 SCALE2 0.000000 0.018585 0.006911 0.00000 SCALE3 0.000000 0.000000 0.015895 0.00000