HEADER OXIDOREDUCTASE 09-SEP-16 5T95 TITLE PREPHENATE DEHYDROGENASE M219T, N222D MUTANT FROM SOYBEAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPHENATE DEHYDROGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 5 EC: 1.3.1.13; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: PDH1, GLYMA_18G023100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DEHYDROGENASE, TYROSINE BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.K.HOLLAND,J.M.JEZ REVDAT 6 04-OCT-23 5T95 1 REMARK REVDAT 5 27-NOV-19 5T95 1 REMARK REVDAT 4 27-SEP-17 5T95 1 REMARK REVDAT 3 30-AUG-17 5T95 1 JRNL REVDAT 2 19-JUL-17 5T95 1 JRNL REVDAT 1 28-JUN-17 5T95 0 JRNL AUTH C.A.SCHENCK,C.K.HOLLAND,M.R.SCHNEIDER,Y.MEN,S.G.LEE,J.M.JEZ, JRNL AUTH 2 H.A.MAEDA JRNL TITL MOLECULAR BASIS OF THE EVOLUTION OF ALTERNATIVE TYROSINE JRNL TITL 2 BIOSYNTHETIC ROUTES IN PLANTS. JRNL REF NAT. CHEM. BIOL. V. 13 1029 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28671678 JRNL DOI 10.1038/NCHEMBIO.2414 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 59535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9955 - 4.7282 0.90 2625 149 0.1473 0.1756 REMARK 3 2 4.7282 - 3.7545 0.95 2765 141 0.1199 0.1421 REMARK 3 3 3.7545 - 3.2803 0.90 2605 112 0.1380 0.1589 REMARK 3 4 3.2803 - 2.9806 0.90 2623 152 0.1464 0.1704 REMARK 3 5 2.9806 - 2.7671 0.92 2703 133 0.1575 0.1957 REMARK 3 6 2.7671 - 2.6040 0.93 2657 148 0.1545 0.1624 REMARK 3 7 2.6040 - 2.4736 0.93 2712 153 0.1552 0.1936 REMARK 3 8 2.4736 - 2.3660 0.94 2713 147 0.1543 0.1915 REMARK 3 9 2.3660 - 2.2749 0.83 2380 146 0.1559 0.1959 REMARK 3 10 2.2749 - 2.1964 0.88 2516 154 0.1564 0.1865 REMARK 3 11 2.1964 - 2.1278 0.90 2632 143 0.1583 0.1818 REMARK 3 12 2.1278 - 2.0670 0.90 2615 143 0.1615 0.1745 REMARK 3 13 2.0670 - 2.0125 0.91 2580 160 0.1546 0.1959 REMARK 3 14 2.0125 - 1.9634 0.90 2660 135 0.1643 0.1816 REMARK 3 15 1.9634 - 1.9188 0.90 2624 125 0.1736 0.2302 REMARK 3 16 1.9188 - 1.8780 0.90 2599 140 0.1835 0.2128 REMARK 3 17 1.8780 - 1.8404 0.86 2460 128 0.1818 0.2140 REMARK 3 18 1.8404 - 1.8057 0.80 2359 123 0.1928 0.2243 REMARK 3 19 1.8057 - 1.7734 0.84 2457 124 0.1893 0.2343 REMARK 3 20 1.7734 - 1.7434 0.86 2504 131 0.2084 0.2637 REMARK 3 21 1.7434 - 1.7153 0.86 2524 110 0.2173 0.2662 REMARK 3 22 1.7153 - 1.6889 0.75 2199 126 0.2312 0.3339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4313 REMARK 3 ANGLE : 0.975 5875 REMARK 3 CHIRALITY : 0.055 682 REMARK 3 PLANARITY : 0.005 733 REMARK 3 DIHEDRAL : 14.221 2604 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 9:183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8979 -44.1269 -32.8265 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.1091 REMARK 3 T33: 0.1036 T12: 0.0115 REMARK 3 T13: 0.0085 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.2527 L22: 0.9691 REMARK 3 L33: 1.5374 L12: 0.4551 REMARK 3 L13: 0.4959 L23: 0.4213 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.1062 S13: 0.0220 REMARK 3 S21: -0.0509 S22: 0.0270 S23: -0.0575 REMARK 3 S31: -0.0499 S32: 0.0613 S33: -0.0156 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 184:257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0941 -55.3289 -14.5832 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.1191 REMARK 3 T33: 0.0902 T12: 0.0081 REMARK 3 T13: 0.0024 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.5307 L22: 2.7997 REMARK 3 L33: 1.7455 L12: 0.1560 REMARK 3 L13: -0.1467 L23: -1.5365 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.0487 S13: 0.0465 REMARK 3 S21: 0.1125 S22: -0.0208 S23: -0.0777 REMARK 3 S31: -0.0490 S32: 0.0446 S33: 0.0329 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 8:50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5378 -40.2872 -6.0571 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.1106 REMARK 3 T33: 0.1357 T12: 0.0005 REMARK 3 T13: -0.0003 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.7587 L22: 3.2097 REMARK 3 L33: 1.7873 L12: -0.6211 REMARK 3 L13: -0.4464 L23: 0.0312 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: -0.0450 S13: -0.1000 REMARK 3 S21: 0.1236 S22: 0.0404 S23: -0.0742 REMARK 3 S31: 0.1424 S32: -0.0121 S33: -0.0349 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 51:67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1201 -45.7225 0.1971 REMARK 3 T TENSOR REMARK 3 T11: 0.2403 T22: 0.1744 REMARK 3 T33: 0.2563 T12: -0.0419 REMARK 3 T13: 0.0415 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 2.3159 L22: 3.7118 REMARK 3 L33: 7.8262 L12: 0.3282 REMARK 3 L13: -1.2419 L23: 0.0872 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: 0.0424 S13: -0.3455 REMARK 3 S21: 0.5032 S22: 0.0092 S23: 0.3462 REMARK 3 S31: 0.5620 S32: -0.7670 S33: -0.0485 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 68:125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7963 -31.8876 6.8957 REMARK 3 T TENSOR REMARK 3 T11: 0.2362 T22: 0.1526 REMARK 3 T33: 0.1498 T12: -0.0152 REMARK 3 T13: 0.0534 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 2.2289 L22: 1.4950 REMARK 3 L33: 2.1131 L12: 0.0739 REMARK 3 L13: 0.2670 L23: -0.2598 REMARK 3 S TENSOR REMARK 3 S11: 0.0371 S12: -0.2667 S13: -0.2237 REMARK 3 S21: 0.4196 S22: -0.0178 S23: 0.2496 REMARK 3 S31: 0.2580 S32: -0.2465 S33: -0.0471 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 126:139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7136 -26.4314 -9.0187 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.2290 REMARK 3 T33: 0.1959 T12: -0.0190 REMARK 3 T13: 0.0228 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 8.0254 L22: 4.2345 REMARK 3 L33: 2.6051 L12: -0.1469 REMARK 3 L13: 2.3061 L23: -0.7340 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: 0.7631 S13: -0.2644 REMARK 3 S21: -0.2462 S22: 0.1111 S23: -0.3492 REMARK 3 S31: -0.0106 S32: 0.6401 S33: -0.1404 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 140:183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8261 -25.7802 6.4900 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.1486 REMARK 3 T33: 0.1326 T12: 0.0014 REMARK 3 T13: -0.0443 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.4009 L22: 2.2591 REMARK 3 L33: 1.3881 L12: -0.4773 REMARK 3 L13: -0.0583 L23: 0.0025 REMARK 3 S TENSOR REMARK 3 S11: -0.0798 S12: -0.1902 S13: -0.0809 REMARK 3 S21: 0.5054 S22: 0.0971 S23: -0.2662 REMARK 3 S31: 0.0340 S32: 0.1065 S33: -0.0352 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 184:206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3020 -11.5567 -18.2209 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1203 REMARK 3 T33: 0.1726 T12: -0.0036 REMARK 3 T13: 0.0091 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 2.3028 L22: 1.0911 REMARK 3 L33: 4.3537 L12: 0.4195 REMARK 3 L13: -1.0367 L23: -0.6789 REMARK 3 S TENSOR REMARK 3 S11: -0.1264 S12: 0.1885 S13: -0.1182 REMARK 3 S21: -0.1430 S22: 0.0203 S23: 0.0112 REMARK 3 S31: 0.0538 S32: -0.2833 S33: 0.1361 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 207:236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9499 -16.3288 -11.5037 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.1114 REMARK 3 T33: 0.1409 T12: 0.0235 REMARK 3 T13: -0.0214 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.1933 L22: 2.3462 REMARK 3 L33: 2.4611 L12: 0.9536 REMARK 3 L13: -0.1955 L23: -0.9964 REMARK 3 S TENSOR REMARK 3 S11: -0.1644 S12: 0.0248 S13: -0.0996 REMARK 3 S21: -0.1419 S22: 0.0586 S23: -0.0082 REMARK 3 S31: 0.2698 S32: 0.0005 S33: 0.1483 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 237:257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6642 2.1886 -8.2552 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.1513 REMARK 3 T33: 0.1375 T12: 0.0321 REMARK 3 T13: -0.0034 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 1.2695 L22: 5.4905 REMARK 3 L33: 4.7822 L12: -0.2652 REMARK 3 L13: 0.1853 L23: -3.5895 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: -0.0369 S13: 0.0618 REMARK 3 S21: 0.2741 S22: 0.1148 S23: 0.1082 REMARK 3 S31: -0.1653 S32: -0.0856 S33: -0.0564 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN A AND RESID 302:302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2222 -53.0329 -21.9325 REMARK 3 T TENSOR REMARK 3 T11: 0.2546 T22: 0.1412 REMARK 3 T33: 0.1701 T12: -0.0272 REMARK 3 T13: 0.0073 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.9981 L22: 1.9937 REMARK 3 L33: 1.9966 L12: 1.9896 REMARK 3 L13: 1.9957 L23: 1.9920 REMARK 3 S TENSOR REMARK 3 S11: 0.3836 S12: 0.1284 S13: -0.2755 REMARK 3 S21: -0.2786 S22: -0.0553 S23: 0.2476 REMARK 3 S31: 0.6431 S32: 0.3311 S33: -0.2448 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 302:302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2299 -22.5634 -8.5802 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.2745 REMARK 3 T33: 0.1721 T12: -0.0362 REMARK 3 T13: 0.0133 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 5.1436 L22: 4.5426 REMARK 3 L33: 3.4162 L12: -4.6434 REMARK 3 L13: 0.3472 L23: 0.7740 REMARK 3 S TENSOR REMARK 3 S11: 0.2676 S12: -0.3342 S13: 0.2703 REMARK 3 S21: 0.0422 S22: 0.0055 S23: -0.0533 REMARK 3 S31: -0.3518 S32: 0.9811 S33: -0.2427 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T95 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59535 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 33.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 12.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34400 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, PHASER REMARK 200 STARTING MODEL: 5T8X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% (W/V) PEG 8000, 40 MM POTASSIUM REMARK 280 PHOSPHATE DIBASIC, AND 20% (V/V) GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 GLN A 8 REMARK 465 GLN A 258 REMARK 465 ARG A 259 REMARK 465 THR A 260 REMARK 465 ASN A 261 REMARK 465 GLY A 262 REMARK 465 GLU A 263 REMARK 465 GLN A 264 REMARK 465 GLY A 265 REMARK 465 HIS A 266 REMARK 465 LYS A 267 REMARK 465 ARG A 268 REMARK 465 THR A 269 REMARK 465 GLU A 270 REMARK 465 SER A 271 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 SER B 7 REMARK 465 GLN B 258 REMARK 465 ARG B 259 REMARK 465 THR B 260 REMARK 465 ASN B 261 REMARK 465 GLY B 262 REMARK 465 GLU B 263 REMARK 465 GLN B 264 REMARK 465 GLY B 265 REMARK 465 HIS B 266 REMARK 465 LYS B 267 REMARK 465 ARG B 268 REMARK 465 THR B 269 REMARK 465 GLU B 270 REMARK 465 SER B 271 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 103 N THR A 123 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 39 C - N - CA ANGL. DEV. = -17.9 DEGREES REMARK 500 SER A 39 CA - C - N ANGL. DEV. = 14.5 DEGREES REMARK 500 SER A 39 O - C - N ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 17 47.41 -97.54 REMARK 500 MET A 126 46.61 -84.81 REMARK 500 PHE A 157 -64.78 76.95 REMARK 500 SER A 183 -75.13 -122.62 REMARK 500 PHE B 17 45.70 -101.61 REMARK 500 MET B 126 45.98 -83.09 REMARK 500 ARG B 147 88.42 -151.77 REMARK 500 SER B 183 -77.74 -124.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYR A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYR B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T9F RELATED DB: PDB REMARK 900 RELATED ID: 5T8X RELATED DB: PDB REMARK 900 RELATED ID: 5T9E RELATED DB: PDB DBREF 5T95 A 1 271 UNP I1MYY4 I1MYY4_SOYBN 1 271 DBREF 5T95 B 1 271 UNP I1MYY4 I1MYY4_SOYBN 1 271 SEQADV 5T95 THR A 219 UNP I1MYY4 MET 219 ENGINEERED MUTATION SEQADV 5T95 ASP A 222 UNP I1MYY4 ASN 222 ENGINEERED MUTATION SEQADV 5T95 THR B 219 UNP I1MYY4 MET 219 ENGINEERED MUTATION SEQADV 5T95 ASP B 222 UNP I1MYY4 ASN 222 ENGINEERED MUTATION SEQRES 1 A 271 MET SER THR SER SER SER SER GLN SER LEU LYS ILE GLY SEQRES 2 A 271 ILE VAL GLY PHE GLY ASN PHE GLY GLN PHE LEU ALA LYS SEQRES 3 A 271 THR MET ILE LYS GLN GLY HIS THR LEU THR ALA THR SER SEQRES 4 A 271 ARG SER ASP TYR SER GLU LEU CYS LEU GLN MET GLY ILE SEQRES 5 A 271 HIS PHE PHE ARG ASP VAL SER ALA PHE LEU THR ALA ASP SEQRES 6 A 271 ILE ASP VAL ILE VAL LEU CYS THR SER ILE LEU SER LEU SEQRES 7 A 271 SER GLU VAL VAL GLY SER MET PRO LEU THR SER LEU LYS SEQRES 8 A 271 ARG PRO THR LEU PHE VAL ASP VAL LEU SER VAL LYS GLU SEQRES 9 A 271 HIS PRO ARG GLU LEU LEU LEU ARG GLU LEU PRO GLU ASP SEQRES 10 A 271 SER ASP ILE LEU CYS THR HIS PRO MET PHE GLY PRO GLN SEQRES 11 A 271 THR ALA LYS ASN GLY TRP THR ASP HIS THR PHE MET TYR SEQRES 12 A 271 ASP LYS VAL ARG ILE ARG ASP GLU VAL ILE CYS SER ASN SEQRES 13 A 271 PHE ILE GLN ILE PHE ALA THR GLU GLY CYS LYS MET VAL SEQRES 14 A 271 GLN MET SER CYS GLU GLU HIS ASP ARG ALA ALA ALA LYS SEQRES 15 A 271 SER GLN PHE ILE THR HIS THR ILE GLY ARG THR LEU GLY SEQRES 16 A 271 GLU MET ASP ILE GLN SER THR PRO ILE ASP THR LYS GLY SEQRES 17 A 271 PHE GLU THR LEU VAL LYS LEU LYS GLU THR THR MET ARG SEQRES 18 A 271 ASP SER PHE ASP LEU TYR SER GLY LEU PHE VAL TYR ASN SEQRES 19 A 271 ARG PHE ALA ARG GLN GLU LEU GLU ASN LEU GLU HIS ALA SEQRES 20 A 271 LEU HIS LYS VAL LYS GLU THR LEU MET ILE GLN ARG THR SEQRES 21 A 271 ASN GLY GLU GLN GLY HIS LYS ARG THR GLU SER SEQRES 1 B 271 MET SER THR SER SER SER SER GLN SER LEU LYS ILE GLY SEQRES 2 B 271 ILE VAL GLY PHE GLY ASN PHE GLY GLN PHE LEU ALA LYS SEQRES 3 B 271 THR MET ILE LYS GLN GLY HIS THR LEU THR ALA THR SER SEQRES 4 B 271 ARG SER ASP TYR SER GLU LEU CYS LEU GLN MET GLY ILE SEQRES 5 B 271 HIS PHE PHE ARG ASP VAL SER ALA PHE LEU THR ALA ASP SEQRES 6 B 271 ILE ASP VAL ILE VAL LEU CYS THR SER ILE LEU SER LEU SEQRES 7 B 271 SER GLU VAL VAL GLY SER MET PRO LEU THR SER LEU LYS SEQRES 8 B 271 ARG PRO THR LEU PHE VAL ASP VAL LEU SER VAL LYS GLU SEQRES 9 B 271 HIS PRO ARG GLU LEU LEU LEU ARG GLU LEU PRO GLU ASP SEQRES 10 B 271 SER ASP ILE LEU CYS THR HIS PRO MET PHE GLY PRO GLN SEQRES 11 B 271 THR ALA LYS ASN GLY TRP THR ASP HIS THR PHE MET TYR SEQRES 12 B 271 ASP LYS VAL ARG ILE ARG ASP GLU VAL ILE CYS SER ASN SEQRES 13 B 271 PHE ILE GLN ILE PHE ALA THR GLU GLY CYS LYS MET VAL SEQRES 14 B 271 GLN MET SER CYS GLU GLU HIS ASP ARG ALA ALA ALA LYS SEQRES 15 B 271 SER GLN PHE ILE THR HIS THR ILE GLY ARG THR LEU GLY SEQRES 16 B 271 GLU MET ASP ILE GLN SER THR PRO ILE ASP THR LYS GLY SEQRES 17 B 271 PHE GLU THR LEU VAL LYS LEU LYS GLU THR THR MET ARG SEQRES 18 B 271 ASP SER PHE ASP LEU TYR SER GLY LEU PHE VAL TYR ASN SEQRES 19 B 271 ARG PHE ALA ARG GLN GLU LEU GLU ASN LEU GLU HIS ALA SEQRES 20 B 271 LEU HIS LYS VAL LYS GLU THR LEU MET ILE GLN ARG THR SEQRES 21 B 271 ASN GLY GLU GLN GLY HIS LYS ARG THR GLU SER HET NAP A 301 48 HET TYR A 302 13 HET NAP B 301 48 HET TYR B 302 13 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM TYR TYROSINE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 TYR 2(C9 H11 N O3) FORMUL 7 HOH *493(H2 O) HELIX 1 AA1 GLY A 18 GLN A 31 1 14 HELIX 2 AA2 TYR A 43 GLY A 51 1 9 HELIX 3 AA3 ASP A 57 THR A 63 1 7 HELIX 4 AA4 SER A 77 MET A 85 1 9 HELIX 5 AA5 PRO A 86 LEU A 90 5 5 HELIX 6 AA6 LYS A 103 LEU A 114 1 12 HELIX 7 AA7 ASP A 150 GLU A 164 1 15 HELIX 8 AA8 SER A 172 SER A 183 1 12 HELIX 9 AA9 SER A 183 ASP A 198 1 16 HELIX 10 AB1 THR A 206 MET A 220 1 15 HELIX 11 AB2 SER A 223 TYR A 233 1 11 HELIX 12 AB3 PHE A 236 ILE A 257 1 22 HELIX 13 AB4 GLY B 18 GLN B 31 1 14 HELIX 14 AB5 TYR B 43 GLY B 51 1 9 HELIX 15 AB6 ASP B 57 THR B 63 1 7 HELIX 16 AB7 SER B 77 SER B 84 1 8 HELIX 17 AB8 PRO B 86 LEU B 90 5 5 HELIX 18 AB9 LYS B 103 LEU B 114 1 12 HELIX 19 AC1 ASP B 150 GLU B 164 1 15 HELIX 20 AC2 SER B 172 SER B 183 1 12 HELIX 21 AC3 SER B 183 ASP B 198 1 16 HELIX 22 AC4 THR B 206 ARG B 221 1 16 HELIX 23 AC5 SER B 223 TYR B 233 1 11 HELIX 24 AC6 PHE B 236 ILE B 257 1 22 SHEET 1 AA1 8 HIS A 53 PHE A 55 0 SHEET 2 AA1 8 THR A 34 THR A 38 1 N ALA A 37 O PHE A 55 SHEET 3 AA1 8 LYS A 11 VAL A 15 1 N ILE A 14 O THR A 36 SHEET 4 AA1 8 VAL A 68 LEU A 71 1 O VAL A 68 N GLY A 13 SHEET 5 AA1 8 LEU A 95 ASP A 98 1 O VAL A 97 N LEU A 71 SHEET 6 AA1 8 ILE A 120 PRO A 125 1 O LEU A 121 N PHE A 96 SHEET 7 AA1 8 THR A 140 ARG A 147 -1 O MET A 142 N HIS A 124 SHEET 8 AA1 8 LYS A 167 GLN A 170 1 O LYS A 167 N PHE A 141 SHEET 1 AA2 8 HIS B 53 PHE B 55 0 SHEET 2 AA2 8 THR B 34 THR B 38 1 N ALA B 37 O PHE B 55 SHEET 3 AA2 8 LYS B 11 VAL B 15 1 N ILE B 14 O THR B 36 SHEET 4 AA2 8 VAL B 68 LEU B 71 1 O VAL B 70 N GLY B 13 SHEET 5 AA2 8 LEU B 95 ASP B 98 1 O VAL B 97 N LEU B 71 SHEET 6 AA2 8 ILE B 120 PRO B 125 1 O LEU B 121 N PHE B 96 SHEET 7 AA2 8 THR B 140 ARG B 147 -1 O MET B 142 N HIS B 124 SHEET 8 AA2 8 LYS B 167 GLN B 170 1 O LYS B 167 N PHE B 141 SITE 1 AC1 36 GLY A 16 PHE A 17 GLY A 18 ASN A 19 SITE 2 AC1 36 PHE A 20 SER A 39 ARG A 40 SER A 41 SITE 3 AC1 36 TYR A 43 CYS A 72 THR A 73 SER A 74 SITE 4 AC1 36 ILE A 75 SER A 77 GLU A 80 VAL A 81 SITE 5 AC1 36 VAL A 99 LEU A 100 SER A 101 PRO A 125 SITE 6 AC1 36 PHE A 127 GLY A 128 PRO A 129 ASP A 222 SITE 7 AC1 36 SER A 223 TYR A 302 HOH A 447 HOH A 455 SITE 8 AC1 36 HOH A 466 HOH A 482 HOH A 483 HOH A 492 SITE 9 AC1 36 HOH A 494 HOH A 529 HOH A 538 HOH A 544 SITE 1 AC2 9 SER A 101 HIS A 124 GLY A 128 PRO A 129 SITE 2 AC2 9 GLN A 130 THR A 131 GLN A 184 ASP A 222 SITE 3 AC2 9 NAP A 301 SITE 1 AC3 36 GLY B 16 PHE B 17 GLY B 18 ASN B 19 SITE 2 AC3 36 PHE B 20 SER B 39 ARG B 40 SER B 41 SITE 3 AC3 36 TYR B 43 CYS B 72 THR B 73 SER B 74 SITE 4 AC3 36 ILE B 75 SER B 77 GLU B 80 VAL B 81 SITE 5 AC3 36 VAL B 99 LEU B 100 SER B 101 PRO B 125 SITE 6 AC3 36 PHE B 127 GLY B 128 PRO B 129 ASP B 222 SITE 7 AC3 36 SER B 223 TYR B 302 HOH B 411 HOH B 446 SITE 8 AC3 36 HOH B 449 HOH B 464 HOH B 465 HOH B 476 SITE 9 AC3 36 HOH B 478 HOH B 487 HOH B 521 HOH B 540 SITE 1 AC4 11 SER B 101 HIS B 124 GLY B 128 PRO B 129 SITE 2 AC4 11 GLN B 130 THR B 131 GLN B 184 HIS B 188 SITE 3 AC4 11 ASP B 222 NAP B 301 HOH B 504 CRYST1 46.294 54.603 68.092 106.95 99.32 103.70 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021601 0.005267 0.005705 0.00000 SCALE2 0.000000 0.018850 0.006910 0.00000 SCALE3 0.000000 0.000000 0.015851 0.00000