HEADER OXIDOREDUCTASE 09-SEP-16 5T9E TITLE SELENO-METHIONINE PREPHENATE DEHYDROGENASE FROM SOYBEAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPHENATE DEHYDROGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 5 EC: 1.3.1.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: PDH1, GLYMA_18G023100; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL: ROSETTA 2 KEYWDS DEHYDROGENASE, TYROSINE BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.K.HOLLAND,J.M.JEZ,S.G.LEE REVDAT 5 27-NOV-19 5T9E 1 REMARK REVDAT 4 27-SEP-17 5T9E 1 REMARK REVDAT 3 30-AUG-17 5T9E 1 JRNL REVDAT 2 19-JUL-17 5T9E 1 JRNL REVDAT 1 28-JUN-17 5T9E 0 JRNL AUTH C.A.SCHENCK,C.K.HOLLAND,M.R.SCHNEIDER,Y.MEN,S.G.LEE,J.M.JEZ, JRNL AUTH 2 H.A.MAEDA JRNL TITL MOLECULAR BASIS OF THE EVOLUTION OF ALTERNATIVE TYROSINE JRNL TITL 2 BIOSYNTHETIC ROUTES IN PLANTS. JRNL REF NAT. CHEM. BIOL. V. 13 1029 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28671678 JRNL DOI 10.1038/NCHEMBIO.2414 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 63.4 REMARK 3 NUMBER OF REFLECTIONS : 50450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0660 - 5.6718 0.89 3007 198 0.2005 0.1970 REMARK 3 2 5.6718 - 4.5052 0.89 3040 195 0.1734 0.2389 REMARK 3 3 4.5052 - 3.9366 0.86 2895 182 0.1582 0.1926 REMARK 3 4 3.9366 - 3.5771 0.84 2869 183 0.1651 0.1990 REMARK 3 5 3.5771 - 3.3210 0.84 2844 186 0.1769 0.2113 REMARK 3 6 3.3210 - 3.1253 0.83 2833 188 0.1825 0.2417 REMARK 3 7 3.1253 - 2.9689 0.82 2778 179 0.1924 0.2805 REMARK 3 8 2.9689 - 2.8397 0.78 2654 161 0.2110 0.2414 REMARK 3 9 2.8397 - 2.7305 0.76 2584 166 0.2055 0.2344 REMARK 3 10 2.7305 - 2.6363 0.73 2455 161 0.2078 0.2526 REMARK 3 11 2.6363 - 2.5539 0.71 2426 150 0.2087 0.2782 REMARK 3 12 2.5539 - 2.4809 0.66 2247 148 0.2067 0.2517 REMARK 3 13 2.4809 - 2.4156 0.63 2168 139 0.2044 0.2504 REMARK 3 14 2.4156 - 2.3567 0.60 2057 129 0.2045 0.2286 REMARK 3 15 2.3567 - 2.3031 0.55 1859 127 0.2140 0.2417 REMARK 3 16 2.3031 - 2.2541 0.52 1767 110 0.1985 0.2428 REMARK 3 17 2.2541 - 2.2090 0.47 1594 98 0.2038 0.2614 REMARK 3 18 2.2090 - 2.1673 0.44 1493 94 0.1977 0.2679 REMARK 3 19 2.1673 - 2.1286 0.38 1295 79 0.2065 0.2671 REMARK 3 20 2.1286 - 2.0926 0.34 1174 76 0.2104 0.2236 REMARK 3 21 2.0926 - 2.0588 0.31 1011 64 0.2140 0.3347 REMARK 3 22 2.0588 - 2.0271 0.11 363 24 0.2471 0.2408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4201 REMARK 3 ANGLE : 1.172 5694 REMARK 3 CHIRALITY : 0.046 657 REMARK 3 PLANARITY : 0.004 710 REMARK 3 DIHEDRAL : 14.536 1540 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.0753 11.3856 23.6289 REMARK 3 T TENSOR REMARK 3 T11: 0.1427 T22: 0.1045 REMARK 3 T33: 0.1270 T12: -0.0053 REMARK 3 T13: 0.0150 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.3833 L22: 0.6581 REMARK 3 L33: 0.7869 L12: -0.4816 REMARK 3 L13: 0.1396 L23: -0.0686 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: -0.0289 S13: -0.0030 REMARK 3 S21: 0.1019 S22: 0.0249 S23: -0.0824 REMARK 3 S31: 0.0392 S32: -0.0054 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8877 35.8117 9.0716 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.1299 REMARK 3 T33: 0.1289 T12: -0.0037 REMARK 3 T13: -0.0014 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.1378 L22: 0.1915 REMARK 3 L33: 0.1771 L12: -0.0161 REMARK 3 L13: -0.1544 L23: -0.3499 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.0512 S13: -0.0335 REMARK 3 S21: -0.0811 S22: 0.0110 S23: 0.1367 REMARK 3 S31: 0.0025 S32: -0.1128 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4858 -1.0734 -7.3237 REMARK 3 T TENSOR REMARK 3 T11: 0.1517 T22: 0.2248 REMARK 3 T33: 0.2272 T12: -0.0154 REMARK 3 T13: -0.0353 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: -0.0154 L22: 0.0220 REMARK 3 L33: 0.0140 L12: -0.0807 REMARK 3 L13: 0.0013 L23: 0.0405 REMARK 3 S TENSOR REMARK 3 S11: 0.2247 S12: 0.0961 S13: 0.1666 REMARK 3 S21: 0.1384 S22: -0.1620 S23: -0.0136 REMARK 3 S31: 0.1425 S32: 0.1363 S33: -0.0016 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0374 9.4555 -2.8898 REMARK 3 T TENSOR REMARK 3 T11: 0.0916 T22: 0.1292 REMARK 3 T33: 0.1805 T12: -0.0248 REMARK 3 T13: -0.0317 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.2227 L22: 0.0144 REMARK 3 L33: 0.3101 L12: 0.0736 REMARK 3 L13: -0.2087 L23: -0.0704 REMARK 3 S TENSOR REMARK 3 S11: -0.1479 S12: -0.1142 S13: -0.2141 REMARK 3 S21: -0.0617 S22: -0.0311 S23: -0.2827 REMARK 3 S31: 0.0722 S32: 0.2391 S33: -0.0378 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8629 7.0424 -9.8783 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1551 REMARK 3 T33: 0.1453 T12: 0.0340 REMARK 3 T13: 0.0174 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.0176 L22: 0.0358 REMARK 3 L33: 0.0043 L12: -0.0497 REMARK 3 L13: -0.0541 L23: -0.0286 REMARK 3 S TENSOR REMARK 3 S11: 0.0927 S12: 0.0699 S13: -0.0547 REMARK 3 S21: -0.0720 S22: -0.1246 S23: 0.0782 REMARK 3 S31: -0.3010 S32: -0.0051 S33: -0.0005 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6997 5.8017 -16.3654 REMARK 3 T TENSOR REMARK 3 T11: 0.1994 T22: 0.1422 REMARK 3 T33: 0.1760 T12: -0.0019 REMARK 3 T13: 0.0199 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.2826 L22: 0.2421 REMARK 3 L33: 0.3225 L12: -0.0096 REMARK 3 L13: 0.3431 L23: 0.0374 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: -0.0750 S13: 0.3960 REMARK 3 S21: 0.0097 S22: 0.1956 S23: 0.1128 REMARK 3 S31: -0.3512 S32: -0.0993 S33: 0.0008 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 126 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0089 -13.5331 -2.7259 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.1478 REMARK 3 T33: 0.1681 T12: -0.0524 REMARK 3 T13: -0.0130 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.2950 L22: 0.6304 REMARK 3 L33: 0.9172 L12: -0.2133 REMARK 3 L13: -0.3914 L23: -0.1546 REMARK 3 S TENSOR REMARK 3 S11: 0.1960 S12: 0.0219 S13: -0.0660 REMARK 3 S21: 0.3668 S22: -0.3261 S23: 0.5750 REMARK 3 S31: 0.1989 S32: -0.4363 S33: -0.0670 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7753 -6.2601 -19.2053 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.2431 REMARK 3 T33: 0.1543 T12: -0.0187 REMARK 3 T13: 0.0102 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.1581 L22: 0.1511 REMARK 3 L33: 0.1769 L12: -0.0083 REMARK 3 L13: 0.2395 L23: 0.0348 REMARK 3 S TENSOR REMARK 3 S11: -0.0750 S12: 0.3371 S13: -0.3769 REMARK 3 S21: 0.2181 S22: -0.0063 S23: 0.2713 REMARK 3 S31: 0.1613 S32: -0.3451 S33: -0.0140 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 165 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3720 -10.6756 -12.8164 REMARK 3 T TENSOR REMARK 3 T11: 0.1884 T22: 0.1572 REMARK 3 T33: 0.2691 T12: 0.0095 REMARK 3 T13: -0.0445 T23: -0.0732 REMARK 3 L TENSOR REMARK 3 L11: 0.1055 L22: 0.0889 REMARK 3 L33: 0.3577 L12: -0.0085 REMARK 3 L13: -0.0831 L23: -0.1202 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: 0.1496 S13: -0.2674 REMARK 3 S21: -0.1269 S22: 0.1195 S23: -0.2804 REMARK 3 S31: 0.2535 S32: -0.0615 S33: 0.0123 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 184 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4113 -13.1626 12.4297 REMARK 3 T TENSOR REMARK 3 T11: 0.1697 T22: 0.2050 REMARK 3 T33: 0.1617 T12: -0.0006 REMARK 3 T13: -0.0439 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: -0.0163 L22: 0.6355 REMARK 3 L33: 0.2169 L12: -0.1007 REMARK 3 L13: 0.0331 L23: -0.4156 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: 0.0362 S13: 0.3837 REMARK 3 S21: 0.5521 S22: 0.1854 S23: 0.0914 REMARK 3 S31: -0.5022 S32: -0.0106 S33: -0.0006 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4969 -15.0215 10.7653 REMARK 3 T TENSOR REMARK 3 T11: 0.0773 T22: 0.1974 REMARK 3 T33: 0.1464 T12: -0.0040 REMARK 3 T13: -0.0250 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.6233 L22: 0.2062 REMARK 3 L33: 1.2318 L12: 0.1240 REMARK 3 L13: -0.3072 L23: 0.3911 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: -0.1747 S13: 0.3661 REMARK 3 S21: -0.2456 S22: 0.0003 S23: 0.0403 REMARK 3 S31: -0.6614 S32: 0.1426 S33: 0.0326 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 222 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1110 -0.6432 -1.2195 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1722 REMARK 3 T33: 0.2303 T12: 0.0144 REMARK 3 T13: -0.0348 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.0377 L22: 0.0826 REMARK 3 L33: 0.2199 L12: -0.0485 REMARK 3 L13: -0.0608 L23: 0.1182 REMARK 3 S TENSOR REMARK 3 S11: 0.2236 S12: -0.0295 S13: -0.0914 REMARK 3 S21: -0.1869 S22: 0.0014 S23: -0.2336 REMARK 3 S31: -0.2918 S32: -0.2617 S33: 0.0393 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 237 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5476 -14.1828 6.5050 REMARK 3 T TENSOR REMARK 3 T11: 0.0851 T22: 0.2195 REMARK 3 T33: 0.2236 T12: 0.0019 REMARK 3 T13: -0.0020 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 0.1355 L22: 0.3601 REMARK 3 L33: 0.7613 L12: 0.2207 REMARK 3 L13: -0.1032 L23: -0.0090 REMARK 3 S TENSOR REMARK 3 S11: 0.2251 S12: -0.0161 S13: 0.0652 REMARK 3 S21: 0.1175 S22: 0.0705 S23: 0.6165 REMARK 3 S31: -0.3376 S32: -0.2682 S33: 0.0018 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE REASON OF THE LOW COMPLETENESS REMARK 3 (60%) IS THE LOW ANOMALOUS COMPLETENESS REMARK 4 REMARK 4 5T9E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60106 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG-3350, 100 MM SODIUM REMARK 280 CITRATE, PH 4.0, AND 200 MM SODIUM CITRATE TRIBASIC, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 GLN A 8 REMARK 465 ARG A 259 REMARK 465 THR A 260 REMARK 465 ASN A 261 REMARK 465 GLY A 262 REMARK 465 GLU A 263 REMARK 465 GLN A 264 REMARK 465 GLY A 265 REMARK 465 HIS A 266 REMARK 465 LYS A 267 REMARK 465 ARG A 268 REMARK 465 THR A 269 REMARK 465 GLU A 270 REMARK 465 SER A 271 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 SER B 7 REMARK 465 GLN B 8 REMARK 465 ARG B 259 REMARK 465 THR B 260 REMARK 465 ASN B 261 REMARK 465 GLY B 262 REMARK 465 GLU B 263 REMARK 465 GLN B 264 REMARK 465 GLY B 265 REMARK 465 HIS B 266 REMARK 465 LYS B 267 REMARK 465 ARG B 268 REMARK 465 THR B 269 REMARK 465 GLU B 270 REMARK 465 SER B 271 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 480 O HOH A 504 1.82 REMARK 500 O HOH A 411 O HOH A 493 1.94 REMARK 500 O HOH A 496 O HOH A 499 2.06 REMARK 500 OE2 GLU A 45 O HOH A 401 2.09 REMARK 500 O HOH A 457 O HOH A 493 2.11 REMARK 500 O HOH B 464 O HOH B 506 2.13 REMARK 500 O HOH A 403 O HOH A 494 2.13 REMARK 500 OH TYR A 233 O HOH A 402 2.13 REMARK 500 O HOH B 502 O HOH B 510 2.13 REMARK 500 OE2 GLU B 116 O HOH B 401 2.13 REMARK 500 O HOH A 455 O HOH A 508 2.15 REMARK 500 O HOH B 496 O HOH B 509 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 17 43.58 -101.86 REMARK 500 MSE A 126 47.29 -84.28 REMARK 500 ASN A 134 -80.81 -71.35 REMARK 500 ARG A 147 89.86 -153.68 REMARK 500 SER A 183 -74.14 -133.24 REMARK 500 PHE B 17 50.26 -96.84 REMARK 500 ASP B 138 -5.77 74.97 REMARK 500 SER B 183 -74.58 -134.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T8X RELATED DB: PDB REMARK 900 RELATED ID: 5T95 RELATED DB: PDB REMARK 900 RELATED ID: 5T9F RELATED DB: PDB DBREF 5T9E A 1 271 UNP I1MYY4 I1MYY4_SOYBN 1 271 DBREF 5T9E B 1 271 UNP I1MYY4 I1MYY4_SOYBN 1 271 SEQRES 1 A 271 MSE SER THR SER SER SER SER GLN SER LEU LYS ILE GLY SEQRES 2 A 271 ILE VAL GLY PHE GLY ASN PHE GLY GLN PHE LEU ALA LYS SEQRES 3 A 271 THR MSE ILE LYS GLN GLY HIS THR LEU THR ALA THR SER SEQRES 4 A 271 ARG SER ASP TYR SER GLU LEU CYS LEU GLN MSE GLY ILE SEQRES 5 A 271 HIS PHE PHE ARG ASP VAL SER ALA PHE LEU THR ALA ASP SEQRES 6 A 271 ILE ASP VAL ILE VAL LEU CYS THR SER ILE LEU SER LEU SEQRES 7 A 271 SER GLU VAL VAL GLY SER MSE PRO LEU THR SER LEU LYS SEQRES 8 A 271 ARG PRO THR LEU PHE VAL ASP VAL LEU SER VAL LYS GLU SEQRES 9 A 271 HIS PRO ARG GLU LEU LEU LEU ARG GLU LEU PRO GLU ASP SEQRES 10 A 271 SER ASP ILE LEU CYS THR HIS PRO MSE PHE GLY PRO GLN SEQRES 11 A 271 THR ALA LYS ASN GLY TRP THR ASP HIS THR PHE MSE TYR SEQRES 12 A 271 ASP LYS VAL ARG ILE ARG ASP GLU VAL ILE CYS SER ASN SEQRES 13 A 271 PHE ILE GLN ILE PHE ALA THR GLU GLY CYS LYS MSE VAL SEQRES 14 A 271 GLN MSE SER CYS GLU GLU HIS ASP ARG ALA ALA ALA LYS SEQRES 15 A 271 SER GLN PHE ILE THR HIS THR ILE GLY ARG THR LEU GLY SEQRES 16 A 271 GLU MSE ASP ILE GLN SER THR PRO ILE ASP THR LYS GLY SEQRES 17 A 271 PHE GLU THR LEU VAL LYS LEU LYS GLU THR MSE MSE ARG SEQRES 18 A 271 ASN SER PHE ASP LEU TYR SER GLY LEU PHE VAL TYR ASN SEQRES 19 A 271 ARG PHE ALA ARG GLN GLU LEU GLU ASN LEU GLU HIS ALA SEQRES 20 A 271 LEU HIS LYS VAL LYS GLU THR LEU MSE ILE GLN ARG THR SEQRES 21 A 271 ASN GLY GLU GLN GLY HIS LYS ARG THR GLU SER SEQRES 1 B 271 MSE SER THR SER SER SER SER GLN SER LEU LYS ILE GLY SEQRES 2 B 271 ILE VAL GLY PHE GLY ASN PHE GLY GLN PHE LEU ALA LYS SEQRES 3 B 271 THR MSE ILE LYS GLN GLY HIS THR LEU THR ALA THR SER SEQRES 4 B 271 ARG SER ASP TYR SER GLU LEU CYS LEU GLN MSE GLY ILE SEQRES 5 B 271 HIS PHE PHE ARG ASP VAL SER ALA PHE LEU THR ALA ASP SEQRES 6 B 271 ILE ASP VAL ILE VAL LEU CYS THR SER ILE LEU SER LEU SEQRES 7 B 271 SER GLU VAL VAL GLY SER MSE PRO LEU THR SER LEU LYS SEQRES 8 B 271 ARG PRO THR LEU PHE VAL ASP VAL LEU SER VAL LYS GLU SEQRES 9 B 271 HIS PRO ARG GLU LEU LEU LEU ARG GLU LEU PRO GLU ASP SEQRES 10 B 271 SER ASP ILE LEU CYS THR HIS PRO MSE PHE GLY PRO GLN SEQRES 11 B 271 THR ALA LYS ASN GLY TRP THR ASP HIS THR PHE MSE TYR SEQRES 12 B 271 ASP LYS VAL ARG ILE ARG ASP GLU VAL ILE CYS SER ASN SEQRES 13 B 271 PHE ILE GLN ILE PHE ALA THR GLU GLY CYS LYS MSE VAL SEQRES 14 B 271 GLN MSE SER CYS GLU GLU HIS ASP ARG ALA ALA ALA LYS SEQRES 15 B 271 SER GLN PHE ILE THR HIS THR ILE GLY ARG THR LEU GLY SEQRES 16 B 271 GLU MSE ASP ILE GLN SER THR PRO ILE ASP THR LYS GLY SEQRES 17 B 271 PHE GLU THR LEU VAL LYS LEU LYS GLU THR MSE MSE ARG SEQRES 18 B 271 ASN SER PHE ASP LEU TYR SER GLY LEU PHE VAL TYR ASN SEQRES 19 B 271 ARG PHE ALA ARG GLN GLU LEU GLU ASN LEU GLU HIS ALA SEQRES 20 B 271 LEU HIS LYS VAL LYS GLU THR LEU MSE ILE GLN ARG THR SEQRES 21 B 271 ASN GLY GLU GLN GLY HIS LYS ARG THR GLU SER MODRES 5T9E MSE A 28 MET MODIFIED RESIDUE MODRES 5T9E MSE A 50 MET MODIFIED RESIDUE MODRES 5T9E MSE A 85 MET MODIFIED RESIDUE MODRES 5T9E MSE A 126 MET MODIFIED RESIDUE MODRES 5T9E MSE A 142 MET MODIFIED RESIDUE MODRES 5T9E MSE A 168 MET MODIFIED RESIDUE MODRES 5T9E MSE A 171 MET MODIFIED RESIDUE MODRES 5T9E MSE A 197 MET MODIFIED RESIDUE MODRES 5T9E MSE A 219 MET MODIFIED RESIDUE MODRES 5T9E MSE A 220 MET MODIFIED RESIDUE MODRES 5T9E MSE A 256 MET MODIFIED RESIDUE MODRES 5T9E MSE B 28 MET MODIFIED RESIDUE MODRES 5T9E MSE B 50 MET MODIFIED RESIDUE MODRES 5T9E MSE B 85 MET MODIFIED RESIDUE MODRES 5T9E MSE B 126 MET MODIFIED RESIDUE MODRES 5T9E MSE B 142 MET MODIFIED RESIDUE MODRES 5T9E MSE B 168 MET MODIFIED RESIDUE MODRES 5T9E MSE B 171 MET MODIFIED RESIDUE MODRES 5T9E MSE B 197 MET MODIFIED RESIDUE MODRES 5T9E MSE B 219 MET MODIFIED RESIDUE MODRES 5T9E MSE B 220 MET MODIFIED RESIDUE MODRES 5T9E MSE B 256 MET MODIFIED RESIDUE HET MSE A 28 8 HET MSE A 50 8 HET MSE A 85 8 HET MSE A 126 8 HET MSE A 142 8 HET MSE A 168 8 HET MSE A 171 8 HET MSE A 197 8 HET MSE A 219 8 HET MSE A 220 8 HET MSE A 256 8 HET MSE B 28 8 HET MSE B 50 8 HET MSE B 85 8 HET MSE B 126 8 HET MSE B 142 8 HET MSE B 168 8 HET MSE B 171 8 HET MSE B 197 8 HET MSE B 219 8 HET MSE B 220 8 HET MSE B 256 8 HET NAP A 301 48 HET NAP B 301 48 HETNAM MSE SELENOMETHIONINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *222(H2 O) HELIX 1 AA1 GLY A 18 GLY A 32 1 15 HELIX 2 AA2 TYR A 43 GLY A 51 1 9 HELIX 3 AA3 ASP A 57 LEU A 62 1 6 HELIX 4 AA4 SER A 74 LEU A 76 5 3 HELIX 5 AA5 SER A 77 MSE A 85 1 9 HELIX 6 AA6 PRO A 86 LEU A 90 5 5 HELIX 7 AA7 LYS A 103 LEU A 114 1 12 HELIX 8 AA8 ASP A 150 THR A 163 1 14 HELIX 9 AA9 SER A 172 LYS A 182 1 11 HELIX 10 AB1 SER A 183 ASP A 198 1 16 HELIX 11 AB2 THR A 206 MSE A 220 1 15 HELIX 12 AB3 SER A 223 TYR A 233 1 11 HELIX 13 AB4 PHE A 236 GLN A 258 1 23 HELIX 14 AB5 GLY B 18 GLN B 31 1 14 HELIX 15 AB6 TYR B 43 GLY B 51 1 9 HELIX 16 AB7 ASP B 57 LEU B 62 1 6 HELIX 17 AB8 SER B 77 SER B 84 1 8 HELIX 18 AB9 PRO B 86 LEU B 90 5 5 HELIX 19 AC1 LYS B 103 LEU B 114 1 12 HELIX 20 AC2 ASP B 150 GLU B 164 1 15 HELIX 21 AC3 SER B 172 SER B 183 1 12 HELIX 22 AC4 SER B 183 ASP B 198 1 16 HELIX 23 AC5 THR B 206 MSE B 220 1 15 HELIX 24 AC6 SER B 223 TYR B 233 1 11 HELIX 25 AC7 PHE B 236 ILE B 257 1 22 SHEET 1 AA1 8 HIS A 53 PHE A 55 0 SHEET 2 AA1 8 THR A 34 THR A 38 1 N ALA A 37 O HIS A 53 SHEET 3 AA1 8 LYS A 11 VAL A 15 1 N ILE A 14 O THR A 36 SHEET 4 AA1 8 VAL A 68 LEU A 71 1 O VAL A 70 N GLY A 13 SHEET 5 AA1 8 LEU A 95 ASP A 98 1 O VAL A 97 N LEU A 71 SHEET 6 AA1 8 ASP A 119 PRO A 125 1 O ASP A 119 N PHE A 96 SHEET 7 AA1 8 THR A 140 ARG A 147 -1 O ASP A 144 N CYS A 122 SHEET 8 AA1 8 LYS A 167 GLN A 170 1 O LYS A 167 N PHE A 141 SHEET 1 AA2 8 HIS B 53 PHE B 55 0 SHEET 2 AA2 8 THR B 34 THR B 38 1 N ALA B 37 O PHE B 55 SHEET 3 AA2 8 LYS B 11 VAL B 15 1 N ILE B 12 O THR B 34 SHEET 4 AA2 8 VAL B 68 LEU B 71 1 O VAL B 70 N VAL B 15 SHEET 5 AA2 8 LEU B 95 ASP B 98 1 O VAL B 97 N LEU B 71 SHEET 6 AA2 8 ASP B 119 PRO B 125 1 O ASP B 119 N PHE B 96 SHEET 7 AA2 8 THR B 140 ARG B 147 -1 O ARG B 147 N ILE B 120 SHEET 8 AA2 8 LYS B 167 GLN B 170 1 O VAL B 169 N PHE B 141 LINK C THR A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N ILE A 29 1555 1555 1.33 LINK C GLN A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N GLY A 51 1555 1555 1.33 LINK C SER A 84 N MSE A 85 1555 1555 1.34 LINK C MSE A 85 N PRO A 86 1555 1555 1.34 LINK C PRO A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N PHE A 127 1555 1555 1.32 LINK C PHE A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N TYR A 143 1555 1555 1.32 LINK C LYS A 167 N MSE A 168 1555 1555 1.32 LINK C MSE A 168 N VAL A 169 1555 1555 1.33 LINK C GLN A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N SER A 172 1555 1555 1.33 LINK C GLU A 196 N MSE A 197 1555 1555 1.33 LINK C MSE A 197 N ASP A 198 1555 1555 1.34 LINK C THR A 218 N MSE A 219 1555 1555 1.33 LINK C MSE A 219 N MSE A 220 1555 1555 1.34 LINK C MSE A 220 N ARG A 221 1555 1555 1.33 LINK C LEU A 255 N MSE A 256 1555 1555 1.34 LINK C MSE A 256 N ILE A 257 1555 1555 1.33 LINK C THR B 27 N MSE B 28 1555 1555 1.32 LINK C MSE B 28 N ILE B 29 1555 1555 1.33 LINK C GLN B 49 N MSE B 50 1555 1555 1.33 LINK C MSE B 50 N GLY B 51 1555 1555 1.32 LINK C SER B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N PRO B 86 1555 1555 1.34 LINK C PRO B 125 N MSE B 126 1555 1555 1.33 LINK C MSE B 126 N PHE B 127 1555 1555 1.33 LINK C PHE B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N TYR B 143 1555 1555 1.33 LINK C LYS B 167 N MSE B 168 1555 1555 1.32 LINK C MSE B 168 N VAL B 169 1555 1555 1.32 LINK C GLN B 170 N MSE B 171 1555 1555 1.33 LINK C MSE B 171 N SER B 172 1555 1555 1.33 LINK C GLU B 196 N MSE B 197 1555 1555 1.33 LINK C MSE B 197 N ASP B 198 1555 1555 1.33 LINK C THR B 218 N MSE B 219 1555 1555 1.33 LINK C MSE B 219 N MSE B 220 1555 1555 1.33 LINK C MSE B 220 N ARG B 221 1555 1555 1.33 LINK C LEU B 255 N MSE B 256 1555 1555 1.33 LINK C MSE B 256 N ILE B 257 1555 1555 1.33 CISPEP 1 SER A 9 LEU A 10 0 -8.16 SITE 1 AC1 28 GLY A 16 PHE A 17 GLY A 18 ASN A 19 SITE 2 AC1 28 PHE A 20 SER A 39 ARG A 40 SER A 41 SITE 3 AC1 28 TYR A 43 CYS A 72 THR A 73 SER A 74 SITE 4 AC1 28 ILE A 75 SER A 77 GLU A 80 VAL A 81 SITE 5 AC1 28 VAL A 99 LEU A 100 SER A 101 PRO A 125 SITE 6 AC1 28 PHE A 127 GLY A 128 PRO A 129 SER A 223 SITE 7 AC1 28 HOH A 407 HOH A 418 HOH A 421 HOH A 436 SITE 1 AC2 29 GLY B 16 GLY B 18 ASN B 19 PHE B 20 SITE 2 AC2 29 SER B 39 ARG B 40 SER B 41 TYR B 43 SITE 3 AC2 29 CYS B 72 THR B 73 SER B 74 ILE B 75 SITE 4 AC2 29 SER B 77 GLU B 80 VAL B 81 VAL B 99 SITE 5 AC2 29 LEU B 100 SER B 101 PRO B 125 PHE B 127 SITE 6 AC2 29 GLY B 128 PRO B 129 SER B 223 HOH B 410 SITE 7 AC2 29 HOH B 428 HOH B 435 HOH B 450 HOH B 459 SITE 8 AC2 29 HOH B 480 CRYST1 46.508 55.127 68.592 107.34 98.89 103.55 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021502 0.005182 0.005513 0.00000 SCALE2 0.000000 0.018659 0.006926 0.00000 SCALE3 0.000000 0.000000 0.015740 0.00000