HEADER RIBOSOMAL PROTEIN 09-SEP-16 5T9P TITLE STRUCTURAL ANALYSIS REVEALS THE FLEXIBLE C-TERMINUS OF NOP15 UNDERGOES TITLE 2 REARRANGEMENT TO RECOGNIZE A PRE-RIBOSOMAL RNA FOLDING INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME BIOGENESIS PROTEIN 15; COMPND 3 CHAIN: B, C, A, D; COMPND 4 FRAGMENT: RESIDUES 81-191; COMPND 5 SYNONYM: NUCLEOLAR PROTEIN 15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: NOP15, YNL110C, N1954; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS NOP15, RRM, RIBOSOMAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHANG,E.L.GONZALEZ,M.T.T.HALL REVDAT 5 06-MAR-24 5T9P 1 REMARK REVDAT 4 25-DEC-19 5T9P 1 REMARK REVDAT 3 20-SEP-17 5T9P 1 REMARK REVDAT 2 03-MAY-17 5T9P 1 JRNL REVDAT 1 16-NOV-16 5T9P 0 JRNL AUTH J.ZHANG,L.E.GONZALEZ,T.M.T.HALL JRNL TITL STRUCTURAL ANALYSIS REVEALS THE FLEXIBLE C-TERMINUS OF NOP15 JRNL TITL 2 UNDERGOES REARRANGEMENT TO RECOGNIZE A PRE-RIBOSOMAL RNA JRNL TITL 3 FOLDING INTERMEDIATE. JRNL REF NUCLEIC ACIDS RES. V. 45 2829 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 27789691 JRNL DOI 10.1093/NAR/GKW961 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 33014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0671 - 4.8184 0.99 2353 153 0.1963 0.2431 REMARK 3 2 4.8184 - 3.8251 1.00 2350 151 0.1535 0.1784 REMARK 3 3 3.8251 - 3.3418 1.00 2341 151 0.1794 0.1972 REMARK 3 4 3.3418 - 3.0363 1.00 2359 152 0.1985 0.2323 REMARK 3 5 3.0363 - 2.8187 1.00 2326 150 0.1969 0.2714 REMARK 3 6 2.8187 - 2.6526 1.00 2331 150 0.2164 0.2946 REMARK 3 7 2.6526 - 2.5197 1.00 2334 151 0.2085 0.2725 REMARK 3 8 2.5197 - 2.4100 1.00 2350 151 0.2077 0.2446 REMARK 3 9 2.4100 - 2.3173 0.99 2301 148 0.1986 0.2558 REMARK 3 10 2.3173 - 2.2373 0.99 2330 150 0.1975 0.2606 REMARK 3 11 2.2373 - 2.1674 0.96 2231 144 0.1991 0.2323 REMARK 3 12 2.1674 - 2.1054 0.92 2142 138 0.2105 0.2784 REMARK 3 13 2.1054 - 2.0500 0.82 1896 122 0.2185 0.2734 REMARK 3 14 2.0500 - 2.0000 0.58 1370 89 0.2489 0.3260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3439 REMARK 3 ANGLE : 1.296 4602 REMARK 3 CHIRALITY : 0.057 470 REMARK 3 PLANARITY : 0.006 573 REMARK 3 DIHEDRAL : 14.562 1328 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T9P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33029 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% (W/V) PEG 4000, 0.2 M AMMONIUM REMARK 280 SULFATE, PH 5.25 AND 9% (V/V) JEFFAMINE 600, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 78.69950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 81 REMARK 465 ASP B 82 REMARK 465 LYS B 83 REMARK 465 LYS B 84 REMARK 465 THR B 85 REMARK 465 LEU B 86 REMARK 465 LYS C 81 REMARK 465 ASP C 82 REMARK 465 LYS C 83 REMARK 465 LYS C 84 REMARK 465 THR C 85 REMARK 465 LYS A 81 REMARK 465 ASP A 82 REMARK 465 LYS A 83 REMARK 465 LYS A 84 REMARK 465 THR A 85 REMARK 465 LEU A 86 REMARK 465 GLU A 87 REMARK 465 VAL A 185 REMARK 465 GLU A 186 REMARK 465 LYS A 187 REMARK 465 GLY A 188 REMARK 465 ILE A 189 REMARK 465 THR A 190 REMARK 465 LYS A 191 REMARK 465 LYS D 81 REMARK 465 ASP D 82 REMARK 465 LYS D 83 REMARK 465 LYS D 84 REMARK 465 THR D 85 REMARK 465 LEU D 86 REMARK 465 GLU D 87 REMARK 465 TYR D 179 REMARK 465 LYS D 180 REMARK 465 LYS D 181 REMARK 465 ARG D 182 REMARK 465 VAL D 183 REMARK 465 LEU D 184 REMARK 465 VAL D 185 REMARK 465 GLU D 186 REMARK 465 LYS D 187 REMARK 465 GLY D 188 REMARK 465 ILE D 189 REMARK 465 THR D 190 REMARK 465 LYS D 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 SO4 C 203 O HOH C 301 2.11 REMARK 500 O HOH B 351 O HOH B 362 2.17 REMARK 500 O1 SO4 B 203 O HOH B 301 2.18 REMARK 500 O HOH C 326 O HOH C 359 2.18 REMARK 500 O HOH C 372 O HOH C 381 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 343 O HOH C 367 1454 2.15 REMARK 500 O HOH B 317 O HOH C 365 1554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 103 -157.42 -117.19 REMARK 500 HIS C 103 -160.85 -120.39 REMARK 500 HIS A 103 -157.94 -117.73 REMARK 500 LYS A 180 -75.79 -99.33 REMARK 500 LYS A 181 32.25 -147.38 REMARK 500 ARG D 97 32.28 71.17 REMARK 500 HIS D 103 -159.13 -112.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 202 DBREF 5T9P B 81 191 UNP P53927 NOP15_YEAST 81 191 DBREF 5T9P C 81 191 UNP P53927 NOP15_YEAST 81 191 DBREF 5T9P A 81 191 UNP P53927 NOP15_YEAST 81 191 DBREF 5T9P D 81 191 UNP P53927 NOP15_YEAST 81 191 SEQRES 1 B 111 LYS ASP LYS LYS THR LEU GLU GLU TYR SER GLY ILE ILE SEQRES 2 B 111 TYR VAL SER ARG LEU PRO HIS GLY PHE HIS GLU LYS GLU SEQRES 3 B 111 LEU SER LYS TYR PHE ALA GLN PHE GLY ASP LEU LYS GLU SEQRES 4 B 111 VAL ARG LEU ALA ARG ASN LYS LYS THR GLY ASN SER ARG SEQRES 5 B 111 HIS TYR GLY PHE LEU GLU PHE VAL ASN LYS GLU ASP ALA SEQRES 6 B 111 MET ILE ALA GLN GLU SER MET ASN ASN TYR LEU LEU MET SEQRES 7 B 111 GLY HIS LEU LEU GLN VAL ARG VAL LEU PRO LYS GLY ALA SEQRES 8 B 111 LYS ILE GLU LYS LEU TYR LYS TYR LYS LYS ARG VAL LEU SEQRES 9 B 111 VAL GLU LYS GLY ILE THR LYS SEQRES 1 C 111 LYS ASP LYS LYS THR LEU GLU GLU TYR SER GLY ILE ILE SEQRES 2 C 111 TYR VAL SER ARG LEU PRO HIS GLY PHE HIS GLU LYS GLU SEQRES 3 C 111 LEU SER LYS TYR PHE ALA GLN PHE GLY ASP LEU LYS GLU SEQRES 4 C 111 VAL ARG LEU ALA ARG ASN LYS LYS THR GLY ASN SER ARG SEQRES 5 C 111 HIS TYR GLY PHE LEU GLU PHE VAL ASN LYS GLU ASP ALA SEQRES 6 C 111 MET ILE ALA GLN GLU SER MET ASN ASN TYR LEU LEU MET SEQRES 7 C 111 GLY HIS LEU LEU GLN VAL ARG VAL LEU PRO LYS GLY ALA SEQRES 8 C 111 LYS ILE GLU LYS LEU TYR LYS TYR LYS LYS ARG VAL LEU SEQRES 9 C 111 VAL GLU LYS GLY ILE THR LYS SEQRES 1 A 111 LYS ASP LYS LYS THR LEU GLU GLU TYR SER GLY ILE ILE SEQRES 2 A 111 TYR VAL SER ARG LEU PRO HIS GLY PHE HIS GLU LYS GLU SEQRES 3 A 111 LEU SER LYS TYR PHE ALA GLN PHE GLY ASP LEU LYS GLU SEQRES 4 A 111 VAL ARG LEU ALA ARG ASN LYS LYS THR GLY ASN SER ARG SEQRES 5 A 111 HIS TYR GLY PHE LEU GLU PHE VAL ASN LYS GLU ASP ALA SEQRES 6 A 111 MET ILE ALA GLN GLU SER MET ASN ASN TYR LEU LEU MET SEQRES 7 A 111 GLY HIS LEU LEU GLN VAL ARG VAL LEU PRO LYS GLY ALA SEQRES 8 A 111 LYS ILE GLU LYS LEU TYR LYS TYR LYS LYS ARG VAL LEU SEQRES 9 A 111 VAL GLU LYS GLY ILE THR LYS SEQRES 1 D 111 LYS ASP LYS LYS THR LEU GLU GLU TYR SER GLY ILE ILE SEQRES 2 D 111 TYR VAL SER ARG LEU PRO HIS GLY PHE HIS GLU LYS GLU SEQRES 3 D 111 LEU SER LYS TYR PHE ALA GLN PHE GLY ASP LEU LYS GLU SEQRES 4 D 111 VAL ARG LEU ALA ARG ASN LYS LYS THR GLY ASN SER ARG SEQRES 5 D 111 HIS TYR GLY PHE LEU GLU PHE VAL ASN LYS GLU ASP ALA SEQRES 6 D 111 MET ILE ALA GLN GLU SER MET ASN ASN TYR LEU LEU MET SEQRES 7 D 111 GLY HIS LEU LEU GLN VAL ARG VAL LEU PRO LYS GLY ALA SEQRES 8 D 111 LYS ILE GLU LYS LEU TYR LYS TYR LYS LYS ARG VAL LEU SEQRES 9 D 111 VAL GLU LYS GLY ILE THR LYS HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HET CL B 206 1 HET CL B 207 1 HET CL B 208 1 HET CL B 209 1 HET SO4 C 201 5 HET SO4 C 202 5 HET SO4 C 203 5 HET SO4 C 204 5 HET CL C 205 1 HET CL C 206 1 HET SO4 A 201 5 HET SO4 D 201 5 HET CL D 202 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 5 SO4 11(O4 S 2-) FORMUL 10 CL 7(CL 1-) FORMUL 23 HOH *243(H2 O) HELIX 1 AA1 HIS B 103 ALA B 112 1 10 HELIX 2 AA2 GLN B 113 GLY B 115 5 3 HELIX 3 AA3 ASN B 141 ASN B 153 1 13 HELIX 4 AA4 LYS B 172 TYR B 177 1 6 HELIX 5 AA5 LYS B 180 LYS B 187 1 8 HELIX 6 AA6 HIS C 103 GLN C 113 1 11 HELIX 7 AA7 ASN C 141 ASN C 153 1 13 HELIX 8 AA8 LYS C 172 TYR C 177 1 6 HELIX 9 AA9 LYS C 180 LYS C 187 1 8 HELIX 10 AB1 HIS A 103 GLN A 113 1 11 HELIX 11 AB2 ASN A 141 ASN A 153 1 13 HELIX 12 AB3 LYS A 172 TYR A 177 1 6 HELIX 13 AB4 HIS D 103 ALA D 112 1 10 HELIX 14 AB5 GLN D 113 GLY D 115 5 3 HELIX 15 AB6 LYS D 142 ASN D 153 1 12 HELIX 16 AB7 LYS D 172 TYR D 177 1 6 SHEET 1 AA1 4 LEU B 117 ARG B 124 0 SHEET 2 AA1 4 SER B 131 PHE B 139 -1 O GLU B 138 N LYS B 118 SHEET 3 AA1 4 TYR B 89 SER B 96 -1 N ILE B 93 O LEU B 137 SHEET 4 AA1 4 GLN B 163 PRO B 168 -1 O LEU B 167 N ILE B 92 SHEET 1 AA2 2 LEU B 156 LEU B 157 0 SHEET 2 AA2 2 HIS B 160 LEU B 161 -1 O HIS B 160 N LEU B 157 SHEET 1 AA3 4 LEU C 117 ARG C 124 0 SHEET 2 AA3 4 SER C 131 PHE C 139 -1 O GLU C 138 N LYS C 118 SHEET 3 AA3 4 TYR C 89 SER C 96 -1 N ILE C 93 O LEU C 137 SHEET 4 AA3 4 GLN C 163 PRO C 168 -1 O LEU C 167 N SER C 90 SHEET 1 AA4 2 LEU C 156 LEU C 157 0 SHEET 2 AA4 2 HIS C 160 LEU C 161 -1 O HIS C 160 N LEU C 157 SHEET 1 AA5 4 LEU A 117 ARG A 124 0 SHEET 2 AA5 4 SER A 131 PHE A 139 -1 O GLU A 138 N LYS A 118 SHEET 3 AA5 4 TYR A 89 SER A 96 -1 N VAL A 95 O GLY A 135 SHEET 4 AA5 4 GLN A 163 PRO A 168 -1 O LEU A 167 N SER A 90 SHEET 1 AA6 2 LEU A 156 LEU A 157 0 SHEET 2 AA6 2 HIS A 160 LEU A 161 -1 O HIS A 160 N LEU A 157 SHEET 1 AA7 5 LEU D 117 ARG D 124 0 SHEET 2 AA7 5 SER D 131 PHE D 139 -1 O GLU D 138 N LYS D 118 SHEET 3 AA7 5 TYR D 89 SER D 96 -1 N ILE D 93 O LEU D 137 SHEET 4 AA7 5 HIS D 160 PRO D 168 -1 O LEU D 167 N ILE D 92 SHEET 5 AA7 5 TYR D 155 LEU D 157 -1 N TYR D 155 O LEU D 162 CISPEP 1 VAL A 183 LEU A 184 0 -0.79 SITE 1 AC1 4 LYS B 169 HOH B 304 ARG C 97 LYS C 181 SITE 1 AC2 6 LYS A 105 HIS B 100 GLY B 101 HIS B 103 SITE 2 AC2 6 SER B 131 HIS B 133 SITE 1 AC3 4 LYS A 105 HIS B 103 ARG B 124 HOH B 301 SITE 1 AC4 4 ARG B 132 LYS B 181 HOH B 323 HOH B 337 SITE 1 AC5 7 ARG B 132 LYS B 180 LYS B 181 ARG B 182 SITE 2 AC5 7 HOH B 310 HOH B 314 HOH B 356 SITE 1 AC6 2 ARG B 97 HOH C 309 SITE 1 AC7 3 GLN B 163 HOH B 362 HOH C 329 SITE 1 AC8 6 ARG B 97 GLY B 159 HIS B 160 GLU C 88 SITE 2 AC8 6 PRO C 168 HOH C 308 SITE 1 AC9 6 HIS C 103 ARG C 124 HOH C 306 HOH C 340 SITE 2 AC9 6 HIS D 103 LYS D 105 SITE 1 AD1 7 HIS C 100 GLY C 101 HIS C 103 HIS C 133 SITE 2 AD1 7 HOH C 306 HOH C 332 LYS D 105 SITE 1 AD2 6 ARG C 97 HIS C 100 HIS C 133 HIS C 160 SITE 2 AD2 6 HOH C 301 HOH C 302 SITE 1 AD3 4 ARG C 132 LYS C 180 LYS C 181 ARG C 182 SITE 1 AD4 2 GLN B 149 LYS C 175 SITE 1 AD5 5 LYS B 175 HOH B 317 HOH B 360 GLN C 149 SITE 2 AD5 5 ASN C 153 SITE 1 AD6 6 HIS A 100 GLY A 101 HIS A 103 SER A 131 SITE 2 AD6 6 HIS A 133 LYS B 105 SITE 1 AD7 5 HIS D 100 GLY D 101 HIS D 103 SER D 131 SITE 2 AD7 5 HIS D 133 SITE 1 AD8 1 HIS D 103 CRYST1 37.242 157.399 47.130 90.00 107.06 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026851 0.000000 0.008241 0.00000 SCALE2 0.000000 0.006353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022195 0.00000