HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 12-SEP-16 5TBO TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM DIHYDROOROTATE TITLE 2 DEHYDROGENASE BOUND WITH INHIBITOR DSM421 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DHODEHASE,DIHYDROOROTATE OXIDASE; COMPND 5 EC: 1.3.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PFF0160C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS OXIDOREDUCTASE, ALPHA/BETA BARREL, FMN, MITOCHONDRIAL MEMBRANE, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.DENG,M.PHILLIPS REVDAT 7 04-OCT-23 5TBO 1 REMARK REVDAT 6 21-OCT-20 5TBO 1 REMARK REVDAT 5 25-DEC-19 5TBO 1 REMARK REVDAT 4 20-SEP-17 5TBO 1 REMARK REVDAT 3 21-DEC-16 5TBO 1 JRNL REVDAT 2 12-OCT-16 5TBO 1 JRNL REVDAT 1 28-SEP-16 5TBO 0 JRNL AUTH M.A.PHILLIPS,K.L.WHITE,S.KOKKONDA,X.DENG,J.WHITE, JRNL AUTH 2 F.EL MAZOUNI,K.MARSH,D.R.TOMCHICK,K.MANJALANAGARA,K.R.RUDRA, JRNL AUTH 3 G.WIRJANATA,R.NOVIYANTI,R.N.PRICE,J.MARFURT,D.M.SHACKLEFORD, JRNL AUTH 4 F.C.CHIU,M.CAMPBELL,M.B.JIMENEZ-DIAZ,S.F.BAZAGA, JRNL AUTH 5 I.ANGULO-BARTUREN,M.S.MARTINEZ,M.LAFUENTE-MONASTERIO, JRNL AUTH 6 W.KAMINSKY,K.SILUE,A.M.ZEEMAN,C.KOCKEN,D.LEROY,B.BLASCO, JRNL AUTH 7 E.ROSSIGNOL,T.RUECKLE,D.MATTHEWS,J.N.BURROWS,D.WATERSON, JRNL AUTH 8 M.J.PALMER,P.K.RATHOD,S.A.CHARMAN JRNL TITL A TRIAZOLOPYRIMIDINE-BASED DIHYDROOROTATE DEHYDROGENASE JRNL TITL 2 INHIBITOR WITH IMPROVED DRUG-LIKE PROPERTIES FOR TREATMENT JRNL TITL 3 AND PREVENTION OF MALARIA. JRNL REF ACS INFECT DIS V. 2 945 2016 JRNL REFN ESSN 2373-8227 JRNL PMID 27641613 JRNL DOI 10.1021/ACSINFECDIS.6B00144 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.5 REMARK 3 NUMBER OF REFLECTIONS : 26502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.5546 - 4.6306 0.98 2996 168 0.1552 0.1843 REMARK 3 2 4.6306 - 3.6772 1.00 3038 153 0.1479 0.1877 REMARK 3 3 3.6772 - 3.2129 1.00 3002 160 0.1698 0.2125 REMARK 3 4 3.2129 - 2.9194 1.00 3014 169 0.1836 0.2335 REMARK 3 5 2.9194 - 2.7103 1.00 3007 164 0.2024 0.2285 REMARK 3 6 2.7103 - 2.5506 1.00 2985 168 0.2124 0.2675 REMARK 3 7 2.5506 - 2.4229 0.99 3023 144 0.2295 0.2453 REMARK 3 8 2.4229 - 2.3174 0.77 2305 114 0.2509 0.3020 REMARK 3 9 2.3174 - 2.2282 0.42 1262 65 0.2531 0.3166 REMARK 3 10 2.2282 - 2.1514 0.18 527 38 0.2685 0.2585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3011 REMARK 3 ANGLE : 0.755 4060 REMARK 3 CHIRALITY : 0.030 448 REMARK 3 PLANARITY : 0.002 508 REMARK 3 DIHEDRAL : 15.313 1139 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8310 -22.6239 -19.0488 REMARK 3 T TENSOR REMARK 3 T11: 0.2854 T22: 0.4133 REMARK 3 T33: 0.2133 T12: 0.1297 REMARK 3 T13: 0.1572 T23: 0.0779 REMARK 3 L TENSOR REMARK 3 L11: 0.6297 L22: 2.4306 REMARK 3 L33: 1.9526 L12: 0.8317 REMARK 3 L13: -0.3652 L23: -0.8708 REMARK 3 S TENSOR REMARK 3 S11: -0.0440 S12: 0.1877 S13: -0.0013 REMARK 3 S21: -0.3142 S22: 0.0863 S23: -0.3975 REMARK 3 S31: 0.0702 S32: 0.2490 S33: -0.0153 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4916 -17.6193 -5.0104 REMARK 3 T TENSOR REMARK 3 T11: 0.2730 T22: 0.2009 REMARK 3 T33: 0.2069 T12: 0.1531 REMARK 3 T13: 0.0490 T23: 0.0847 REMARK 3 L TENSOR REMARK 3 L11: 1.5091 L22: 2.5694 REMARK 3 L33: 0.8623 L12: -0.9530 REMARK 3 L13: 0.4561 L23: -0.3522 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.1815 S13: 0.2301 REMARK 3 S21: 0.2229 S22: 0.0135 S23: -0.2412 REMARK 3 S31: -0.3008 S32: 0.0387 S33: 0.0903 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1720 -13.3960 5.1715 REMARK 3 T TENSOR REMARK 3 T11: 0.5389 T22: 0.2051 REMARK 3 T33: 0.2971 T12: 0.3563 REMARK 3 T13: 0.2660 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: 0.9962 L22: 1.0384 REMARK 3 L33: 0.3212 L12: -0.2855 REMARK 3 L13: -0.1273 L23: 0.1329 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.2121 S13: 0.3578 REMARK 3 S21: 0.3376 S22: -0.0579 S23: 0.2866 REMARK 3 S31: -0.3970 S32: -0.2622 S33: -0.0545 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 424 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4820 -23.4235 14.1267 REMARK 3 T TENSOR REMARK 3 T11: 0.6016 T22: 0.3425 REMARK 3 T33: 0.2258 T12: 0.1743 REMARK 3 T13: 0.2023 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 2.6906 L22: 0.4690 REMARK 3 L33: 2.5841 L12: 0.6853 REMARK 3 L13: -1.2211 L23: -0.1734 REMARK 3 S TENSOR REMARK 3 S11: -0.0990 S12: -0.3877 S13: 0.0215 REMARK 3 S21: 0.2613 S22: -0.0900 S23: 0.2331 REMARK 3 S31: 0.1440 S32: -0.2693 S33: 0.2263 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 425 THROUGH 474 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5480 -0.8568 1.5386 REMARK 3 T TENSOR REMARK 3 T11: 0.8095 T22: 0.1815 REMARK 3 T33: 0.5176 T12: -0.0370 REMARK 3 T13: -0.0239 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 2.1875 L22: 0.5863 REMARK 3 L33: 1.5422 L12: -0.0801 REMARK 3 L13: -0.2437 L23: 0.5176 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: -0.1210 S13: 0.7865 REMARK 3 S21: 0.1961 S22: 0.0236 S23: -0.2166 REMARK 3 S31: -0.6367 S32: 0.3493 S33: -0.0240 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 475 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1992 -10.6411 1.2107 REMARK 3 T TENSOR REMARK 3 T11: 0.3761 T22: 0.2451 REMARK 3 T33: 0.4612 T12: -0.0468 REMARK 3 T13: -0.1146 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 4.5149 L22: 2.3574 REMARK 3 L33: 4.7021 L12: 0.5421 REMARK 3 L13: -0.4887 L23: 0.9216 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: -0.3035 S13: 0.5251 REMARK 3 S21: 0.4211 S22: 0.0247 S23: -0.8005 REMARK 3 S31: -0.5715 S32: 0.7617 S33: -0.1021 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 538 THROUGH 565 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3090 -22.5961 5.2765 REMARK 3 T TENSOR REMARK 3 T11: 0.3575 T22: 0.5262 REMARK 3 T33: 0.6218 T12: 0.0666 REMARK 3 T13: -0.2215 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 5.6865 L22: 1.1053 REMARK 3 L33: 6.0983 L12: -0.7314 REMARK 3 L13: 0.7513 L23: -0.9753 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: -0.6276 S13: 0.0423 REMARK 3 S21: 0.6114 S22: 0.0213 S23: -1.0001 REMARK 3 S31: 0.0887 S32: 1.2780 S33: -0.0083 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31810 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 31.551 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3I65 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.4, 10% PEG4000, 24% GLYCEROL , AND 10 MM DTT, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.20267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.40533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.20267 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.40533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 139 REMARK 465 GLY A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 ALA A 147 REMARK 465 GLU A 148 REMARK 465 ASN A 149 REMARK 465 LEU A 150 REMARK 465 TYR A 151 REMARK 465 PHE A 152 REMARK 465 GLN A 153 REMARK 465 GLY A 154 REMARK 465 ALA A 155 REMARK 465 ASP A 156 REMARK 465 PRO A 157 REMARK 465 PHE A 158 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 TYR A 161 REMARK 465 SER A 344 REMARK 465 SER A 345 REMARK 465 PRO A 346 REMARK 465 ASN A 347 REMARK 465 THR A 348 REMARK 465 PRO A 349 REMARK 465 GLY A 350 REMARK 465 LEU A 351 REMARK 465 ARG A 352 REMARK 465 ASP A 353 REMARK 465 ASN A 354 REMARK 465 GLN A 355 REMARK 465 HIS A 566 REMARK 465 SER A 567 REMARK 465 LYS A 568 REMARK 465 SER A 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HM11 LDA A 1004 H12 GOL A 1006 4545 1.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 213 -129.43 56.73 REMARK 500 ASP A 228 78.09 -118.89 REMARK 500 CYS A 233 33.91 -142.07 REMARK 500 ASN A 418 -157.89 -129.11 REMARK 500 ASN A 464 13.22 -142.23 REMARK 500 TYR A 528 -68.13 -144.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78Z A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ORO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1006 DBREF 5TBO A 158 569 UNP Q08210 PYRD_PLAF7 158 569 SEQADV 5TBO MET A 139 UNP Q08210 INITIATING METHIONINE SEQADV 5TBO GLY A 140 UNP Q08210 EXPRESSION TAG SEQADV 5TBO HIS A 141 UNP Q08210 EXPRESSION TAG SEQADV 5TBO HIS A 142 UNP Q08210 EXPRESSION TAG SEQADV 5TBO HIS A 143 UNP Q08210 EXPRESSION TAG SEQADV 5TBO HIS A 144 UNP Q08210 EXPRESSION TAG SEQADV 5TBO HIS A 145 UNP Q08210 EXPRESSION TAG SEQADV 5TBO HIS A 146 UNP Q08210 EXPRESSION TAG SEQADV 5TBO ALA A 147 UNP Q08210 EXPRESSION TAG SEQADV 5TBO GLU A 148 UNP Q08210 EXPRESSION TAG SEQADV 5TBO ASN A 149 UNP Q08210 EXPRESSION TAG SEQADV 5TBO LEU A 150 UNP Q08210 EXPRESSION TAG SEQADV 5TBO TYR A 151 UNP Q08210 EXPRESSION TAG SEQADV 5TBO PHE A 152 UNP Q08210 EXPRESSION TAG SEQADV 5TBO GLN A 153 UNP Q08210 EXPRESSION TAG SEQADV 5TBO GLY A 154 UNP Q08210 EXPRESSION TAG SEQADV 5TBO ALA A 155 UNP Q08210 EXPRESSION TAG SEQADV 5TBO ASP A 156 UNP Q08210 EXPRESSION TAG SEQADV 5TBO PRO A 157 UNP Q08210 EXPRESSION TAG SEQADV 5TBO A UNP Q08210 SER 384 DELETION SEQADV 5TBO A UNP Q08210 THR 385 DELETION SEQADV 5TBO A UNP Q08210 TYR 386 DELETION SEQADV 5TBO A UNP Q08210 ASN 387 DELETION SEQADV 5TBO A UNP Q08210 GLU 388 DELETION SEQADV 5TBO A UNP Q08210 ASP 389 DELETION SEQADV 5TBO A UNP Q08210 ASN 390 DELETION SEQADV 5TBO A UNP Q08210 LYS 391 DELETION SEQADV 5TBO A UNP Q08210 ILE 392 DELETION SEQADV 5TBO A UNP Q08210 VAL 393 DELETION SEQADV 5TBO A UNP Q08210 GLU 394 DELETION SEQADV 5TBO A UNP Q08210 LYS 395 DELETION SEQADV 5TBO A UNP Q08210 LYS 396 DELETION SEQADV 5TBO A UNP Q08210 ASN 397 DELETION SEQADV 5TBO A UNP Q08210 ASN 398 DELETION SEQADV 5TBO A UNP Q08210 PHE 399 DELETION SEQADV 5TBO A UNP Q08210 ASN 400 DELETION SEQADV 5TBO A UNP Q08210 LYS 401 DELETION SEQADV 5TBO A UNP Q08210 ASN 402 DELETION SEQADV 5TBO A UNP Q08210 ASN 403 DELETION SEQADV 5TBO A UNP Q08210 SER 404 DELETION SEQADV 5TBO A UNP Q08210 HIS 405 DELETION SEQADV 5TBO A UNP Q08210 MET 406 DELETION SEQADV 5TBO A UNP Q08210 MET 407 DELETION SEQADV 5TBO A UNP Q08210 LYS 408 DELETION SEQADV 5TBO A UNP Q08210 ASP 409 DELETION SEQADV 5TBO A UNP Q08210 ALA 410 DELETION SEQADV 5TBO A UNP Q08210 LYS 411 DELETION SEQADV 5TBO A UNP Q08210 ASP 412 DELETION SEQADV 5TBO A UNP Q08210 ASN 413 DELETION SEQRES 1 A 401 MET GLY HIS HIS HIS HIS HIS HIS ALA GLU ASN LEU TYR SEQRES 2 A 401 PHE GLN GLY ALA ASP PRO PHE GLU SER TYR ASN PRO GLU SEQRES 3 A 401 PHE PHE LEU TYR ASP ILE PHE LEU LYS PHE CYS LEU LYS SEQRES 4 A 401 TYR ILE ASP GLY GLU ILE CYS HIS ASP LEU PHE LEU LEU SEQRES 5 A 401 LEU GLY LYS TYR ASN ILE LEU PRO TYR ASP THR SER ASN SEQRES 6 A 401 ASP SER ILE TYR ALA CYS THR ASN ILE LYS HIS LEU ASP SEQRES 7 A 401 PHE ILE ASN PRO PHE GLY VAL ALA ALA GLY PHE ASP LYS SEQRES 8 A 401 ASN GLY VAL CYS ILE ASP SER ILE LEU LYS LEU GLY PHE SEQRES 9 A 401 SER PHE ILE GLU ILE GLY THR ILE THR PRO ARG GLY GLN SEQRES 10 A 401 THR GLY ASN ALA LYS PRO ARG ILE PHE ARG ASP VAL GLU SEQRES 11 A 401 SER ARG SER ILE ILE ASN SER CYS GLY PHE ASN ASN MET SEQRES 12 A 401 GLY CYS ASP LYS VAL THR GLU ASN LEU ILE LEU PHE ARG SEQRES 13 A 401 LYS ARG GLN GLU GLU ASP LYS LEU LEU SER LYS HIS ILE SEQRES 14 A 401 VAL GLY VAL SER ILE GLY LYS ASN LYS ASP THR VAL ASN SEQRES 15 A 401 ILE VAL ASP ASP LEU LYS TYR CYS ILE ASN LYS ILE GLY SEQRES 16 A 401 ARG TYR ALA ASP TYR ILE ALA ILE ASN VAL SER SER PRO SEQRES 17 A 401 ASN THR PRO GLY LEU ARG ASP ASN GLN GLU ALA GLY LYS SEQRES 18 A 401 LEU LYS ASN ILE ILE LEU SER VAL LYS GLU GLU ILE ASP SEQRES 19 A 401 ASN LEU GLU LYS ASN ASN ILE MET ASN ASP GLU PHE LEU SEQRES 20 A 401 TRP PHE ASN THR THR LYS LYS LYS PRO LEU VAL PHE VAL SEQRES 21 A 401 LYS LEU ALA PRO ASP LEU ASN GLN GLU GLN LYS LYS GLU SEQRES 22 A 401 ILE ALA ASP VAL LEU LEU GLU THR ASN ILE ASP GLY MET SEQRES 23 A 401 ILE ILE SER ASN THR THR THR GLN ILE ASN ASP ILE LYS SEQRES 24 A 401 SER PHE GLU ASN LYS LYS GLY GLY VAL SER GLY ALA LYS SEQRES 25 A 401 LEU LYS ASP ILE SER THR LYS PHE ILE CYS GLU MET TYR SEQRES 26 A 401 ASN TYR THR ASN LYS GLN ILE PRO ILE ILE ALA SER GLY SEQRES 27 A 401 GLY ILE PHE SER GLY LEU ASP ALA LEU GLU LYS ILE GLU SEQRES 28 A 401 ALA GLY ALA SER VAL CYS GLN LEU TYR SER CYS LEU VAL SEQRES 29 A 401 PHE ASN GLY MET LYS SER ALA VAL GLN ILE LYS ARG GLU SEQRES 30 A 401 LEU ASN HIS LEU LEU TYR GLN ARG GLY TYR TYR ASN LEU SEQRES 31 A 401 LYS GLU ALA ILE GLY ARG LYS HIS SER LYS SER HET 78Z A1001 36 HET FMN A1002 49 HET ORO A1003 14 HET LDA A1004 47 HET GOL A1005 14 HET GOL A1006 13 HETNAM 78Z 2-(1,1-DIFLUOROETHYL)-5-METHYL-N-[6-(TRIFLUOROMETHYL) HETNAM 2 78Z PYRIDIN-3-YL][1,2,4]TRIAZOLO[1,5-A]PYRIMIDIN-7-AMINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM GOL GLYCEROL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 78Z C14 H11 F5 N6 FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 ORO C5 H4 N2 O4 FORMUL 5 LDA C14 H31 N O FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *115(H2 O) HELIX 1 AA1 ASN A 162 ILE A 179 1 18 HELIX 2 AA2 ASP A 180 TYR A 194 1 15 HELIX 3 AA3 CYS A 233 LYS A 239 1 7 HELIX 4 AA4 GLY A 282 GLU A 298 1 17 HELIX 5 AA5 ASP A 300 SER A 304 5 5 HELIX 6 AA6 ASN A 320 GLY A 333 1 14 HELIX 7 AA7 ARG A 334 ALA A 336 5 3 HELIX 8 AA8 ALA A 357 ASN A 377 1 21 HELIX 9 AA9 ASN A 381 LEU A 415 5 5 HELIX 10 AB1 ASN A 435 THR A 449 1 15 HELIX 11 AB2 ILE A 466 GLU A 470 5 5 HELIX 12 AB3 LEU A 481 THR A 496 1 16 HELIX 13 AB4 SER A 510 GLY A 521 1 12 HELIX 14 AB5 TYR A 528 ASN A 534 1 7 HELIX 15 AB6 LYS A 537 ARG A 553 1 17 HELIX 16 AB7 ASN A 557 ILE A 562 1 6 SHEET 1 AA1 2 THR A 210 ILE A 212 0 SHEET 2 AA1 2 LEU A 215 PHE A 217 -1 O PHE A 217 N THR A 210 SHEET 1 AA2 9 PHE A 221 VAL A 223 0 SHEET 2 AA2 9 PHE A 244 ILE A 250 1 O GLU A 246 N VAL A 223 SHEET 3 AA2 9 ILE A 307 ILE A 312 1 O SER A 311 N ILE A 247 SHEET 4 AA2 9 TYR A 338 ILE A 341 1 O ALA A 340 N ILE A 312 SHEET 5 AA2 9 LEU A 425 LEU A 430 1 O LEU A 425 N ILE A 339 SHEET 6 AA2 9 GLY A 453 ILE A 456 1 O ILE A 455 N VAL A 428 SHEET 7 AA2 9 ILE A 502 SER A 505 1 O SER A 505 N ILE A 456 SHEET 8 AA2 9 ALA A 522 LEU A 527 1 O VAL A 524 N ALA A 504 SHEET 9 AA2 9 PHE A 221 VAL A 223 1 N GLY A 222 O LEU A 527 SHEET 1 AA3 3 ILE A 263 ASP A 266 0 SHEET 2 AA3 3 SER A 271 ASN A 274 -1 O SER A 271 N ASP A 266 SHEET 3 AA3 3 GLY A 475 GLY A 478 -1 O SER A 477 N ILE A 272 CISPEP 1 GLY A 248 THR A 249 0 3.09 CISPEP 2 LYS A 260 PRO A 261 0 -3.04 CISPEP 3 ILE A 456 SER A 457 0 6.08 SITE 1 AC1 16 LEU A 172 LEU A 176 GLY A 181 GLU A 182 SITE 2 AC1 16 CYS A 184 HIS A 185 PHE A 188 LEU A 197 SITE 3 AC1 16 PHE A 227 LEU A 240 ILE A 263 ARG A 265 SITE 4 AC1 16 ILE A 272 LEU A 531 VAL A 532 MET A 536 SITE 1 AC2 22 ALA A 224 ALA A 225 GLY A 226 LYS A 229 SITE 2 AC2 22 THR A 249 ASN A 274 ASN A 342 LYS A 429 SITE 3 AC2 22 SER A 457 ASN A 458 SER A 477 GLY A 478 SITE 4 AC2 22 SER A 505 GLY A 506 GLY A 507 TYR A 528 SITE 5 AC2 22 SER A 529 ORO A1003 HOH A1106 HOH A1108 SITE 6 AC2 22 HOH A1119 HOH A1123 SITE 1 AC3 9 LYS A 229 ASN A 274 CYS A 276 GLY A 277 SITE 2 AC3 9 PHE A 278 ASN A 342 ASN A 458 THR A 459 SITE 3 AC3 9 FMN A1002 SITE 1 AC4 5 GLU A 164 ASN A 195 ILE A 196 LEU A 197 SITE 2 AC4 5 GOL A1006 SITE 1 AC5 7 LYS A 193 GLY A 231 VAL A 232 ASN A 289 SITE 2 AC5 7 LEU A 292 PHE A 293 ARG A 296 SITE 1 AC6 4 GLU A 164 TYR A 199 THR A 201 LDA A1004 CRYST1 86.380 86.380 138.608 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011577 0.006684 0.000000 0.00000 SCALE2 0.000000 0.013368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007215 0.00000