HEADER TRANSCRIPTION 12-SEP-16 5TBP TITLE CRYSTAL STRUCTURE OF RXR-ALPHA LIGAND BINDING DOMAIN COMPLEXED WITH TITLE 2 SYNTHETIC MODULATOR K8003 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 223-462; COMPND 5 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1,RETINOID X COMPND 6 RECEPTOR ALPHA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RXRA, NR2B1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS NUCLEAR RECEPTOR, SULINDAC, AKT ACTIVATION, COMPLEX, TETRAMER, KEYWDS 2 TRANSCRIPTION, RXR, LBD EXPDTA X-RAY DIFFRACTION AUTHOR A.E.ALESHIN,R.C.LIDDINGTON,Y.SU,X.ZHANG REVDAT 4 04-OCT-23 5TBP 1 REMARK REVDAT 3 04-DEC-19 5TBP 1 REMARK REVDAT 2 27-SEP-17 5TBP 1 REMARK REVDAT 1 09-AUG-17 5TBP 0 JRNL AUTH L.CHEN,A.E.ALESHIN,G.ALITONGBIEKE,Y.ZHOU,X.ZHANG,X.YE,M.HU, JRNL AUTH 2 G.REN,Z.CHEN,Y.MA,D.ZHANG,S.LIU,W.GAO,L.CAI,L.WU,Z.ZENG, JRNL AUTH 3 F.JIANG,J.LIU,H.ZHOU,G.CADWELL,R.C.LIDDINGTON,Y.SU,X.K.ZHANG JRNL TITL MODULATION OF NONGENOMIC ACTIVATION OF PI3K SIGNALLING BY JRNL TITL 2 TETRAMERIZATION OF N-TERMINALLY-CLEAVED RXR ALPHA. JRNL REF NAT COMMUN V. 8 16066 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28714476 JRNL DOI 10.1038/NCOMMS16066 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2645: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 30181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1575 - 5.7753 1.00 2678 139 0.1741 0.1987 REMARK 3 2 5.7753 - 4.5870 1.00 2658 140 0.1780 0.2291 REMARK 3 3 4.5870 - 4.0080 1.00 2648 137 0.1655 0.2168 REMARK 3 4 4.0080 - 3.6419 1.00 2647 132 0.1780 0.2148 REMARK 3 5 3.6419 - 3.3811 1.00 2648 135 0.1973 0.2594 REMARK 3 6 3.3811 - 3.1819 1.00 2616 142 0.2194 0.2825 REMARK 3 7 3.1819 - 3.0226 1.00 2633 140 0.2523 0.3064 REMARK 3 8 3.0226 - 2.8911 1.00 2600 140 0.2430 0.2649 REMARK 3 9 2.8911 - 2.7798 1.00 2632 144 0.2439 0.3252 REMARK 3 10 2.7798 - 2.6839 1.00 2603 129 0.2766 0.3070 REMARK 3 11 2.6839 - 2.6001 0.88 2317 123 0.3085 0.3432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6968 REMARK 3 ANGLE : 0.605 9451 REMARK 3 CHIRALITY : 0.035 1042 REMARK 3 PLANARITY : 0.002 1212 REMARK 3 DIHEDRAL : 14.042 4226 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : VARIMAX OPTIC REMARK 200 OPTICS : VARIMAX OPTIC REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30187 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 36.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.96000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4N8R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 0.35 MM PROTEIN AND 0.6 MM REMARK 280 LIGAND IN 100 MM NACL, 20 MM TRIS-CL WERE MIXED WITH 0.2 UL OF REMARK 280 THE WELL SOLUTION (20% PEG3330 AND 0.2M NA ACETATE), PH 7.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.69000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 219 REMARK 465 SER A 220 REMARK 465 HIS A 221 REMARK 465 MET A 222 REMARK 465 THR A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 ALA A 226 REMARK 465 ASN A 227 REMARK 465 GLU A 228 REMARK 465 ASP A 229 REMARK 465 MET A 230 REMARK 465 PRO A 231 REMARK 465 VAL A 232 REMARK 465 GLU A 233 REMARK 465 ARG A 234 REMARK 465 ILE A 235 REMARK 465 LEU A 236 REMARK 465 GLU A 237 REMARK 465 ALA A 238 REMARK 465 GLU A 239 REMARK 465 LEU A 240 REMARK 465 ALA A 241 REMARK 465 VAL A 242 REMARK 465 GLU A 243 REMARK 465 PRO A 244 REMARK 465 LYS A 245 REMARK 465 THR A 246 REMARK 465 GLU A 247 REMARK 465 THR A 248 REMARK 465 TYR A 249 REMARK 465 VAL A 250 REMARK 465 GLU A 251 REMARK 465 ALA A 252 REMARK 465 ASN A 253 REMARK 465 MET A 254 REMARK 465 GLY A 255 REMARK 465 LEU A 256 REMARK 465 ASN A 257 REMARK 465 PRO A 258 REMARK 465 SER A 259 REMARK 465 SER A 260 REMARK 465 PRO A 261 REMARK 465 ASN A 262 REMARK 465 MET A 461 REMARK 465 THR A 462 REMARK 465 GLY B 219 REMARK 465 SER B 220 REMARK 465 HIS B 221 REMARK 465 MET B 222 REMARK 465 THR B 223 REMARK 465 SER B 224 REMARK 465 SER B 225 REMARK 465 ALA B 226 REMARK 465 VAL B 242 REMARK 465 GLU B 243 REMARK 465 PRO B 244 REMARK 465 LYS B 245 REMARK 465 THR B 246 REMARK 465 GLU B 247 REMARK 465 THR B 248 REMARK 465 TYR B 249 REMARK 465 VAL B 250 REMARK 465 GLU B 251 REMARK 465 ALA B 252 REMARK 465 ASN B 253 REMARK 465 MET B 254 REMARK 465 GLY B 255 REMARK 465 LEU B 256 REMARK 465 ASN B 257 REMARK 465 PRO B 258 REMARK 465 SER B 259 REMARK 465 SER B 260 REMARK 465 HIS B 459 REMARK 465 GLN B 460 REMARK 465 MET B 461 REMARK 465 THR B 462 REMARK 465 GLY C 219 REMARK 465 SER C 220 REMARK 465 HIS C 221 REMARK 465 MET C 222 REMARK 465 THR C 223 REMARK 465 SER C 224 REMARK 465 SER C 225 REMARK 465 ALA C 226 REMARK 465 ASN C 227 REMARK 465 GLU C 243 REMARK 465 PRO C 244 REMARK 465 LYS C 245 REMARK 465 THR C 246 REMARK 465 GLU C 247 REMARK 465 THR C 248 REMARK 465 TYR C 249 REMARK 465 VAL C 250 REMARK 465 GLU C 251 REMARK 465 ALA C 252 REMARK 465 ASN C 253 REMARK 465 MET C 254 REMARK 465 GLY C 255 REMARK 465 LEU C 256 REMARK 465 ASN C 257 REMARK 465 PRO C 258 REMARK 465 SER C 259 REMARK 465 SER C 260 REMARK 465 HIS C 459 REMARK 465 GLN C 460 REMARK 465 MET C 461 REMARK 465 THR C 462 REMARK 465 GLY D 219 REMARK 465 SER D 220 REMARK 465 HIS D 221 REMARK 465 MET D 222 REMARK 465 THR D 223 REMARK 465 SER D 224 REMARK 465 SER D 225 REMARK 465 ALA D 226 REMARK 465 ASN D 227 REMARK 465 GLU D 228 REMARK 465 ASP D 229 REMARK 465 MET D 230 REMARK 465 PRO D 231 REMARK 465 VAL D 232 REMARK 465 GLU D 233 REMARK 465 ARG D 234 REMARK 465 ILE D 235 REMARK 465 LEU D 236 REMARK 465 GLU D 237 REMARK 465 ALA D 238 REMARK 465 GLU D 239 REMARK 465 LEU D 240 REMARK 465 ALA D 241 REMARK 465 VAL D 242 REMARK 465 GLU D 243 REMARK 465 PRO D 244 REMARK 465 LYS D 245 REMARK 465 THR D 246 REMARK 465 GLU D 247 REMARK 465 THR D 248 REMARK 465 TYR D 249 REMARK 465 VAL D 250 REMARK 465 GLU D 251 REMARK 465 ALA D 252 REMARK 465 ASN D 253 REMARK 465 MET D 254 REMARK 465 GLY D 255 REMARK 465 LEU D 256 REMARK 465 ASN D 257 REMARK 465 PRO D 258 REMARK 465 SER D 259 REMARK 465 SER D 260 REMARK 465 PRO D 261 REMARK 465 ASN D 262 REMARK 465 MET D 461 REMARK 465 THR D 462 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS C 440 H ASP C 444 1.60 REMARK 500 OD2 ASP C 363 HH TYR C 408 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP C 295 NH1 ARG C 334 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 288 -4.57 79.60 REMARK 500 HIS B 288 -6.42 81.15 REMARK 500 GLN B 411 79.81 -111.16 REMARK 500 HIS C 288 -8.70 79.41 REMARK 500 LEU C 353 -66.87 -120.06 REMARK 500 HIS D 288 -4.21 74.78 REMARK 500 GLN D 411 79.49 -105.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7A4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7A4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7A4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7A4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7A4 D 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7A4 D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT D 503 DBREF 5TBP A 223 462 UNP P19793 RXRA_HUMAN 223 462 DBREF 5TBP B 223 462 UNP P19793 RXRA_HUMAN 223 462 DBREF 5TBP C 223 462 UNP P19793 RXRA_HUMAN 223 462 DBREF 5TBP D 223 462 UNP P19793 RXRA_HUMAN 223 462 SEQADV 5TBP GLY A 219 UNP P19793 EXPRESSION TAG SEQADV 5TBP SER A 220 UNP P19793 EXPRESSION TAG SEQADV 5TBP HIS A 221 UNP P19793 EXPRESSION TAG SEQADV 5TBP MET A 222 UNP P19793 EXPRESSION TAG SEQADV 5TBP GLY B 219 UNP P19793 EXPRESSION TAG SEQADV 5TBP SER B 220 UNP P19793 EXPRESSION TAG SEQADV 5TBP HIS B 221 UNP P19793 EXPRESSION TAG SEQADV 5TBP MET B 222 UNP P19793 EXPRESSION TAG SEQADV 5TBP GLY C 219 UNP P19793 EXPRESSION TAG SEQADV 5TBP SER C 220 UNP P19793 EXPRESSION TAG SEQADV 5TBP HIS C 221 UNP P19793 EXPRESSION TAG SEQADV 5TBP MET C 222 UNP P19793 EXPRESSION TAG SEQADV 5TBP GLY D 219 UNP P19793 EXPRESSION TAG SEQADV 5TBP SER D 220 UNP P19793 EXPRESSION TAG SEQADV 5TBP HIS D 221 UNP P19793 EXPRESSION TAG SEQADV 5TBP MET D 222 UNP P19793 EXPRESSION TAG SEQRES 1 A 244 GLY SER HIS MET THR SER SER ALA ASN GLU ASP MET PRO SEQRES 2 A 244 VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO SEQRES 3 A 244 LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN SEQRES 4 A 244 PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN SEQRES 5 A 244 ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA SEQRES 6 A 244 LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP SEQRES 7 A 244 GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU SEQRES 8 A 244 ILE ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP SEQRES 9 A 244 GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SEQRES 10 A 244 SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG SEQRES 11 A 244 VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN SEQRES 12 A 244 MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL SEQRES 13 A 244 LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA SEQRES 14 A 244 GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU SEQRES 15 A 244 GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY SEQRES 16 A 244 ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SEQRES 17 A 244 SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE SEQRES 18 A 244 LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET SEQRES 19 A 244 GLU MET LEU GLU ALA PRO HIS GLN MET THR SEQRES 1 B 244 GLY SER HIS MET THR SER SER ALA ASN GLU ASP MET PRO SEQRES 2 B 244 VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO SEQRES 3 B 244 LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN SEQRES 4 B 244 PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN SEQRES 5 B 244 ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA SEQRES 6 B 244 LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP SEQRES 7 B 244 GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU SEQRES 8 B 244 ILE ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP SEQRES 9 B 244 GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SEQRES 10 B 244 SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG SEQRES 11 B 244 VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN SEQRES 12 B 244 MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL SEQRES 13 B 244 LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA SEQRES 14 B 244 GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU SEQRES 15 B 244 GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY SEQRES 16 B 244 ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SEQRES 17 B 244 SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE SEQRES 18 B 244 LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET SEQRES 19 B 244 GLU MET LEU GLU ALA PRO HIS GLN MET THR SEQRES 1 C 244 GLY SER HIS MET THR SER SER ALA ASN GLU ASP MET PRO SEQRES 2 C 244 VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO SEQRES 3 C 244 LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN SEQRES 4 C 244 PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN SEQRES 5 C 244 ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA SEQRES 6 C 244 LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP SEQRES 7 C 244 GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU SEQRES 8 C 244 ILE ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP SEQRES 9 C 244 GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SEQRES 10 C 244 SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG SEQRES 11 C 244 VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN SEQRES 12 C 244 MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL SEQRES 13 C 244 LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA SEQRES 14 C 244 GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU SEQRES 15 C 244 GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY SEQRES 16 C 244 ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SEQRES 17 C 244 SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE SEQRES 18 C 244 LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET SEQRES 19 C 244 GLU MET LEU GLU ALA PRO HIS GLN MET THR SEQRES 1 D 244 GLY SER HIS MET THR SER SER ALA ASN GLU ASP MET PRO SEQRES 2 D 244 VAL GLU ARG ILE LEU GLU ALA GLU LEU ALA VAL GLU PRO SEQRES 3 D 244 LYS THR GLU THR TYR VAL GLU ALA ASN MET GLY LEU ASN SEQRES 4 D 244 PRO SER SER PRO ASN ASP PRO VAL THR ASN ILE CYS GLN SEQRES 5 D 244 ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU TRP ALA SEQRES 6 D 244 LYS ARG ILE PRO HIS PHE SER GLU LEU PRO LEU ASP ASP SEQRES 7 D 244 GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU LEU LEU SEQRES 8 D 244 ILE ALA SER PHE SER HIS ARG SER ILE ALA VAL LYS ASP SEQRES 9 D 244 GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS ARG ASN SEQRES 10 D 244 SER ALA HIS SER ALA GLY VAL GLY ALA ILE PHE ASP ARG SEQRES 11 D 244 VAL LEU THR GLU LEU VAL SER LYS MET ARG ASP MET GLN SEQRES 12 D 244 MET ASP LYS THR GLU LEU GLY CYS LEU ARG ALA ILE VAL SEQRES 13 D 244 LEU PHE ASN PRO ASP SER LYS GLY LEU SER ASN PRO ALA SEQRES 14 D 244 GLU VAL GLU ALA LEU ARG GLU LYS VAL TYR ALA SER LEU SEQRES 15 D 244 GLU ALA TYR CYS LYS HIS LYS TYR PRO GLU GLN PRO GLY SEQRES 16 D 244 ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA LEU ARG SEQRES 17 D 244 SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE PHE PHE SEQRES 18 D 244 LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE LEU MET SEQRES 19 D 244 GLU MET LEU GLU ALA PRO HIS GLN MET THR HET 7A4 A 501 45 HET 7A4 A 502 45 HET 7A4 A 503 45 HET ACT A 504 7 HET ACT A 505 7 HET DMS A 506 10 HET ACT A 507 7 HET ACT A 508 7 HET 7A4 B 501 45 HET GOL B 502 14 HET ACT B 503 7 HET ACT B 504 7 HET GOL C 501 14 HET 7A4 D 501 45 HET 7A4 D 502 45 HET ACT D 503 7 HETNAM 7A4 [(1Z)-5-FLUORO-2-METHYL-1-{[4-(PROPAN-2-YL) HETNAM 2 7A4 PHENYL]METHYLIDENE}-1H-INDEN-3-YL]ACETIC ACID HETNAM ACT ACETATE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 7A4 6(C22 H21 F O2) FORMUL 8 ACT 7(C2 H3 O2 1-) FORMUL 10 DMS C2 H6 O S FORMUL 14 GOL 2(C3 H8 O3) FORMUL 21 HOH *134(H2 O) HELIX 1 AA1 ASP A 263 ARG A 285 1 23 HELIX 2 AA2 PRO A 293 SER A 317 1 25 HELIX 3 AA3 ARG A 334 ALA A 340 1 7 HELIX 4 AA4 VAL A 342 LEU A 353 1 12 HELIX 5 AA5 LEU A 353 GLN A 361 1 9 HELIX 6 AA6 ASP A 363 PHE A 376 1 14 HELIX 7 AA7 ASN A 385 TYR A 408 1 24 HELIX 8 AA8 GLY A 413 LEU A 420 1 8 HELIX 9 AA9 ARG A 421 LEU A 436 1 16 HELIX 10 AB1 LEU A 436 GLY A 443 1 8 HELIX 11 AB2 GLY A 443 ALA A 457 1 15 HELIX 12 AB3 PRO B 231 ALA B 241 1 11 HELIX 13 AB4 ASP B 263 ARG B 285 1 23 HELIX 14 AB5 PRO B 293 SER B 317 1 25 HELIX 15 AB6 ARG B 334 ALA B 340 1 7 HELIX 16 AB7 VAL B 342 LEU B 353 1 12 HELIX 17 AB8 LEU B 353 MET B 360 1 8 HELIX 18 AB9 ASP B 363 PHE B 376 1 14 HELIX 19 AC1 ASN B 385 TYR B 408 1 24 HELIX 20 AC2 GLY B 413 LEU B 420 1 8 HELIX 21 AC3 ARG B 421 LEU B 436 1 16 HELIX 22 AC4 LEU B 436 ILE B 442 1 7 HELIX 23 AC5 GLY B 443 ALA B 457 1 15 HELIX 24 AC6 PRO C 231 ALA C 241 1 11 HELIX 25 AC7 ASP C 263 ARG C 285 1 23 HELIX 26 AC8 PRO C 293 SER C 317 1 25 HELIX 27 AC9 ARG C 334 SER C 339 1 6 HELIX 28 AD1 VAL C 342 LEU C 353 1 12 HELIX 29 AD2 LEU C 353 MET C 360 1 8 HELIX 30 AD3 ASP C 363 PHE C 376 1 14 HELIX 31 AD4 ASN C 385 TYR C 408 1 24 HELIX 32 AD5 GLY C 413 LEU C 420 1 8 HELIX 33 AD6 ARG C 421 HIS C 435 1 15 HELIX 34 AD7 LEU C 436 ILE C 442 1 7 HELIX 35 AD8 GLY C 443 ALA C 457 1 15 HELIX 36 AD9 PRO D 264 ILE D 286 1 23 HELIX 37 AE1 PRO D 293 SER D 317 1 25 HELIX 38 AE2 ARG D 334 ALA D 340 1 7 HELIX 39 AE3 VAL D 342 LEU D 353 1 12 HELIX 40 AE4 LEU D 353 MET D 360 1 8 HELIX 41 AE5 ASP D 363 PHE D 376 1 14 HELIX 42 AE6 ASN D 385 TYR D 408 1 24 HELIX 43 AE7 GLY D 413 LEU D 420 1 8 HELIX 44 AE8 ARG D 421 HIS D 435 1 15 HELIX 45 AE9 LEU D 436 GLY D 443 1 8 HELIX 46 AF1 GLY D 443 GLU D 456 1 14 SHEET 1 AA1 2 GLY A 323 LEU A 325 0 SHEET 2 AA1 2 HIS A 331 HIS A 333 -1 O VAL A 332 N ILE A 324 SHEET 1 AA2 2 GLY B 323 LEU B 325 0 SHEET 2 AA2 2 HIS B 331 HIS B 333 -1 O VAL B 332 N ILE B 324 SHEET 1 AA3 2 GLY C 323 LEU C 325 0 SHEET 2 AA3 2 HIS C 331 HIS C 333 -1 O VAL C 332 N ILE C 324 SHEET 1 AA4 2 GLY D 323 LEU D 325 0 SHEET 2 AA4 2 HIS D 331 HIS D 333 -1 O VAL D 332 N ILE D 324 SSBOND 1 CYS A 269 CYS C 269 1555 1555 2.03 SSBOND 2 CYS B 269 CYS D 269 1555 1555 2.03 SITE 1 AC1 9 ALA A 272 GLN A 275 LEU A 276 LEU A 301 SITE 2 AC1 9 ARG A 302 TRP A 305 PHE C 439 LYS C 440 SITE 3 AC1 9 LEU C 451 SITE 1 AC2 12 ILE A 268 ALA A 271 ALA A 272 GLN A 275 SITE 2 AC2 12 LEU A 309 PHE A 313 ARG A 316 ALA A 327 SITE 3 AC2 12 THR A 328 PHE A 438 ILE A 442 GOL C 501 SITE 1 AC3 9 VAL A 265 LEU A 436 PHE A 439 ILE A 447 SITE 2 AC3 9 ASP C 273 LEU C 276 ARG C 302 TRP C 305 SITE 3 AC3 9 GOL C 501 SITE 1 AC4 1 ARG A 285 SITE 1 AC5 1 HIS A 288 SITE 1 AC6 1 PRO A 287 SITE 1 AC7 6 PRO A 378 GLU A 390 ARG A 393 HOH A 602 SITE 2 AC7 6 LEU B 420 ARG B 421 SITE 1 AC8 6 LYS A 440 LEU A 441 ILE A 442 ASP A 444 SITE 2 AC8 6 THR A 445 PRO A 446 SITE 1 AC9 9 ASP B 273 LEU B 276 ARG B 302 TRP B 305 SITE 2 AC9 9 GOL B 502 VAL D 265 LEU D 436 PHE D 439 SITE 3 AC9 9 ILE D 447 SITE 1 AD1 2 PHE B 439 7A4 B 501 SITE 1 AD2 3 ARG B 234 ARG B 285 GLN D 460 SITE 1 AD3 6 GLN B 275 LEU B 309 PHE B 313 ARG B 316 SITE 2 AD3 6 LEU B 326 ALA B 327 SITE 1 AD4 3 7A4 A 502 7A4 A 503 PHE C 439 SITE 1 AD5 8 PHE B 439 LYS B 440 LEU B 451 ALA D 272 SITE 2 AD5 8 LEU D 276 LEU D 301 ARG D 302 TRP D 305 SITE 1 AD6 7 ALA D 271 ALA D 272 GLN D 275 LEU D 309 SITE 2 AD6 7 ARG D 316 ALA D 327 PHE D 438 SITE 1 AD7 5 ASP D 359 MET D 360 GLN D 361 GLN D 411 SITE 2 AD7 5 ARG D 414 CRYST1 46.640 99.380 109.860 90.00 99.15 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021441 0.000000 0.003453 0.00000 SCALE2 0.000000 0.010062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009220 0.00000