HEADER TRANSFERASE 13-SEP-16 5TBS TITLE CRYSTAL STRUCTURE OF ISOFORM 2 OF PURINE NUCLEOSIDE PHOSPHORYLASE TITLE 2 COMPLEXED WITH ADENINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INOSINE-GUANOSINE PHOSPHORYLASE; COMPND 5 EC: 2.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 GENE: SMP_179110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: LEMO; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPINS3C KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FAHEEM,J.R.TORINI,L.ROMANELLO,J.BRANDAO-NETO,H.M.PEREIRA REVDAT 3 04-OCT-23 5TBS 1 REMARK REVDAT 2 26-SEP-18 5TBS 1 JRNL REVDAT 1 11-OCT-17 5TBS 0 JRNL AUTH J.R.TORINI,L.ROMANELLO,F.A.H.BATISTA,V.H.B.SERRAO,M.FAHEEM, JRNL AUTH 2 A.E.ZERAIK,L.BIRD,J.NETTLESHIP,Y.REDDIVARI,R.OWENS, JRNL AUTH 3 R.DEMARCO,J.C.BORGES,J.BRANDAO-NETO,H.D.PEREIRA JRNL TITL THE MOLECULAR STRUCTURE OF SCHISTOSOMA MANSONI PNP ISOFORM 2 JRNL TITL 2 PROVIDES INSIGHTS INTO THE NUCLEOSIDE SELECTIVITY OF PNPS. JRNL REF PLOS ONE V. 13 03532 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 30192840 JRNL DOI 10.1371/JOURNAL.PONE.0203532 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.4312 - 4.0928 1.00 2718 129 0.1420 0.1594 REMARK 3 2 4.0928 - 3.2488 1.00 2622 116 0.1374 0.1678 REMARK 3 3 3.2488 - 2.8381 1.00 2634 119 0.1467 0.1937 REMARK 3 4 2.8381 - 2.5787 1.00 2545 139 0.1478 0.1648 REMARK 3 5 2.5787 - 2.3938 1.00 2608 121 0.1541 0.2072 REMARK 3 6 2.3938 - 2.2527 1.00 2538 141 0.1880 0.2690 REMARK 3 7 2.2527 - 2.1399 1.00 2555 142 0.1767 0.2340 REMARK 3 8 2.1399 - 2.0467 1.00 2539 147 0.1776 0.2188 REMARK 3 9 2.0467 - 1.9679 1.00 2550 142 0.2027 0.2403 REMARK 3 10 1.9679 - 1.9000 1.00 2502 147 0.3143 0.3575 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2229 REMARK 3 ANGLE : 1.205 3023 REMARK 3 CHIRALITY : 0.080 351 REMARK 3 PLANARITY : 0.008 392 REMARK 3 DIHEDRAL : 12.899 1344 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 113.0888 -97.1136 75.0690 REMARK 3 T TENSOR REMARK 3 T11: 0.2119 T22: 0.3101 REMARK 3 T33: 0.3376 T12: 0.0019 REMARK 3 T13: -0.0629 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 1.2609 L22: 4.5227 REMARK 3 L33: 1.2475 L12: 0.8675 REMARK 3 L13: -0.7329 L23: 1.2345 REMARK 3 S TENSOR REMARK 3 S11: -0.1278 S12: -0.0307 S13: -0.1582 REMARK 3 S21: 0.0630 S22: 0.1182 S23: -0.5616 REMARK 3 S31: 0.1264 S32: 0.3819 S33: 0.0223 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 117.2770 -88.3199 74.3711 REMARK 3 T TENSOR REMARK 3 T11: 0.2376 T22: 0.3774 REMARK 3 T33: 0.4788 T12: -0.1023 REMARK 3 T13: -0.0473 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.8638 L22: 1.4319 REMARK 3 L33: 2.5696 L12: -0.3929 REMARK 3 L13: -0.1829 L23: -0.4624 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: 0.0216 S13: 0.1347 REMARK 3 S21: 0.0841 S22: -0.0057 S23: -0.6137 REMARK 3 S31: -0.4032 S32: 0.7542 S33: 0.0307 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 105.0465 -92.2492 70.2131 REMARK 3 T TENSOR REMARK 3 T11: 0.1698 T22: 0.1886 REMARK 3 T33: 0.2350 T12: -0.0216 REMARK 3 T13: -0.0264 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.0120 L22: 2.2942 REMARK 3 L33: 2.5923 L12: -1.3495 REMARK 3 L13: 1.1594 L23: -2.0521 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: 0.0184 S13: 0.1105 REMARK 3 S21: 0.0981 S22: 0.0208 S23: -0.2811 REMARK 3 S31: -0.1634 S32: 0.0845 S33: 0.0500 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.7950 -80.6847 78.6805 REMARK 3 T TENSOR REMARK 3 T11: 0.1932 T22: 0.1666 REMARK 3 T33: 0.1275 T12: -0.0398 REMARK 3 T13: -0.0041 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.1740 L22: 1.4081 REMARK 3 L33: 0.9168 L12: 0.1789 REMARK 3 L13: 0.4481 L23: -0.0658 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: -0.1729 S13: 0.1379 REMARK 3 S21: 0.2794 S22: -0.0711 S23: -0.0233 REMARK 3 S31: -0.1787 S32: -0.0029 S33: 0.0601 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): 109.1945 -74.9717 82.9072 REMARK 3 T TENSOR REMARK 3 T11: 0.3158 T22: 0.2589 REMARK 3 T33: 0.2857 T12: -0.1040 REMARK 3 T13: -0.0787 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 1.9818 L22: 2.1925 REMARK 3 L33: 5.0006 L12: -1.0699 REMARK 3 L13: 1.1295 L23: -1.8195 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: -0.0984 S13: -0.0640 REMARK 3 S21: 0.1513 S22: -0.0589 S23: -0.3224 REMARK 3 S31: -0.0802 S32: 0.2225 S33: 0.0243 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TBS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27201 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.414 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.84500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CXS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M BIS-TRIS REMARK 280 PH 6.5, 30% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.41350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.41350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.41350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.41350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.41350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.41350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 50.41350 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 50.41350 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 50.41350 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 50.41350 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 50.41350 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 50.41350 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 50.41350 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 50.41350 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 50.41350 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 50.41350 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 50.41350 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 50.41350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 151.24050 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 151.24050 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -151.24050 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 151.24050 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 547 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 287 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 3 OG1 CG2 REMARK 470 ARG A 170 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N THR A 3 O HOH A 401 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 5 100.97 76.76 REMARK 500 HIS A 66 179.18 70.76 REMARK 500 THR A 223 -51.76 77.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 633 DISTANCE = 6.14 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CXQ RELATED DB: PDB REMARK 900 RELATED ID: 5CXS RELATED DB: PDB REMARK 900 RELATED ID: 5KO5 RELATED DB: PDB REMARK 900 RELATED ID: 5KO6 RELATED DB: PDB REMARK 900 RELATED ID: 5TBT RELATED DB: PDB REMARK 900 RELATED ID: 5TBU RELATED DB: PDB REMARK 900 RELATED ID: 5TBV RELATED DB: PDB DBREF1 5TBS A 1 287 UNP A0A0U3AGT1_SCHMA DBREF2 5TBS A A0A0U3AGT1 1 287 SEQRES 1 A 287 MET THR THR PRO VAL VAL ALA ASN TYR GLU ASN ALA SER SEQRES 2 A 287 MET ALA ALA ASP TYR ILE LYS ARG VAL SER ASN VAL LEU SEQRES 3 A 287 PRO ASP ILE GLY ILE ILE CYS GLY SER GLY LEU GLY LYS SEQRES 4 A 287 LEU ILE GLU GLU ILE GLU GLU ARG LYS VAL ILE PRO TYR SEQRES 5 A 287 ILE ASN ILE PRO ASN PHE PRO LYS THR THR VAL ALA GLY SEQRES 6 A 287 HIS VAL GLY ASN LEU VAL LEU GLY SER VAL GLY GLY ARG SEQRES 7 A 287 LYS ILE VAL ALA MET GLN GLY ARG LEU HIS MET TYR GLU SEQRES 8 A 287 GLY TYR SER ASN GLN GLU ILE ALA LEU PRO ILE ARG VAL SEQRES 9 A 287 MET LYS LEU LEU GLY VAL ARG VAL LEU LEU ILE THR ASN SEQRES 10 A 287 LEU ALA GLY GLY ILE ASN ARG LYS LEU LYS SER GLY ASP SEQRES 11 A 287 PHE VAL LEU ILE LYS GLY HIS ILE ASN PHE PRO GLY LEU SEQRES 12 A 287 GLY LEU ASN ASN VAL LEU VAL GLY PRO ASN GLN ASP GLU SEQRES 13 A 287 PHE GLY PRO ARG PHE PRO ASP LEU SER ASN ALA TYR ASP SEQRES 14 A 287 ARG LEU LEU GLN GLN LEU ALA LEU LYS ILE ALA GLN GLU SEQRES 15 A 287 ASN ASP PHE GLN ASP LEU VAL HIS GLU GLY VAL TYR ALA SEQRES 16 A 287 PHE ASN GLY GLY PRO THR TYR GLU SER PRO ASP GLU SER SEQRES 17 A 287 ASN MET LEU LEU LYS LEU GLY CYS ASP VAL VAL GLY MET SEQRES 18 A 287 SER THR VAL PRO GLU VAL ILE ILE ALA CYS HIS CYS GLY SEQRES 19 A 287 ILE LYS VAL LEU ALA VAL SER LEU ILE ALA ASN ASN SER SEQRES 20 A 287 ILE LEU ASP ALA GLU ASN ASP VAL SER ILE ASN HIS GLU SEQRES 21 A 287 LYS VAL LEU ALA VAL ALA GLU LYS ARG ALA ASP LEU LEU SEQRES 22 A 287 GLN MET TRP PHE LYS GLU ILE ILE THR ARG LEU PRO LEU SEQRES 23 A 287 ASP HET ADE A 301 10 HET DMS A 302 4 HET DMS A 303 4 HET DMS A 304 4 HETNAM ADE ADENINE HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 ADE C5 H5 N5 FORMUL 3 DMS 3(C2 H6 O S) FORMUL 6 HOH *233(H2 O) HELIX 1 AA1 ASN A 8 SER A 23 1 16 HELIX 2 AA2 GLY A 38 GLU A 43 1 6 HELIX 3 AA3 ILE A 53 ILE A 55 5 3 HELIX 4 AA4 HIS A 88 GLY A 92 5 5 HELIX 5 AA5 SER A 94 GLY A 109 1 16 HELIX 6 AA6 PHE A 140 GLY A 144 1 5 HELIX 7 AA7 ASP A 169 ASN A 183 1 15 HELIX 8 AA8 PHE A 185 ASP A 187 5 3 HELIX 9 AA9 SER A 204 LEU A 214 1 11 HELIX 10 AB1 THR A 223 CYS A 233 1 11 HELIX 11 AB2 SER A 247 ASP A 254 1 8 HELIX 12 AB3 ASN A 258 LEU A 284 1 27 SHEET 1 AA110 GLU A 45 PRO A 51 0 SHEET 2 AA110 ASN A 69 VAL A 75 -1 O LEU A 70 N ILE A 50 SHEET 3 AA110 ARG A 78 GLN A 84 -1 O GLN A 84 N ASN A 69 SHEET 4 AA110 ILE A 29 ILE A 32 1 N ILE A 31 O MET A 83 SHEET 5 AA110 VAL A 112 GLY A 121 1 O VAL A 112 N GLY A 30 SHEET 6 AA110 LYS A 236 ASN A 246 1 O LYS A 236 N LEU A 113 SHEET 7 AA110 PHE A 131 ASN A 139 -1 N VAL A 132 O SER A 241 SHEET 8 AA110 VAL A 189 PHE A 196 1 O HIS A 190 N LEU A 133 SHEET 9 AA110 VAL A 218 GLY A 220 1 O VAL A 218 N ALA A 195 SHEET 10 AA110 VAL A 112 GLY A 121 -1 N GLY A 120 O VAL A 219 CISPEP 1 GLY A 199 PRO A 200 0 8.11 SITE 1 AC1 11 LEU A 118 ALA A 119 GLY A 120 TYR A 202 SITE 2 AC1 11 GLU A 203 VAL A 219 MET A 221 ALA A 244 SITE 3 AC1 11 ASN A 245 DMS A 304 HOH A 438 SITE 1 AC2 5 PRO A 162 ASP A 163 CYS A 231 HIS A 232 SITE 2 AC2 5 HOH A 610 SITE 1 AC3 8 ASN A 95 GLN A 96 ALA A 99 ARG A 103 SITE 2 AC3 8 VAL A 148 VAL A 150 HOH A 434 HOH A 439 SITE 1 AC4 5 PHE A 161 TYR A 202 HIS A 259 VAL A 262 SITE 2 AC4 5 ADE A 301 CRYST1 100.827 100.827 100.827 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009918 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009918 0.00000