HEADER TRANSFERASE 13-SEP-16 5TBT TITLE CRYSTAL STRUCTURE OF ISOFORM 2 OF PURINE NUCLEOSIDE PHOSPHORYLASE TITLE 2 COMPLEXED WITH CYTIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INOSINE-GUANOSINE PHOSPHORYLASE; COMPND 5 EC: 2.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: LEMO; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPINS3C KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FAHEEM,J.R.TORINI,L.ROMANELLO,J.BRANDAO-NETO,H.M.PEREIRA REVDAT 5 04-OCT-23 5TBT 1 REMARK REVDAT 4 01-JAN-20 5TBT 1 REMARK REVDAT 3 17-APR-19 5TBT 1 REMARK REVDAT 2 26-SEP-18 5TBT 1 JRNL REVDAT 1 11-OCT-17 5TBT 0 JRNL AUTH J.R.TORINI,L.ROMANELLO,F.A.H.BATISTA,V.H.B.SERRAO,M.FAHEEM, JRNL AUTH 2 A.E.ZERAIK,L.BIRD,J.NETTLESHIP,Y.REDDIVARI,R.OWENS, JRNL AUTH 3 R.DEMARCO,J.C.BORGES,J.BRANDAO-NETO,H.D.PEREIRA JRNL TITL THE MOLECULAR STRUCTURE OF SCHISTOSOMA MANSONI PNP ISOFORM 2 JRNL TITL 2 PROVIDES INSIGHTS INTO THE NUCLEOSIDE SELECTIVITY OF PNPS. JRNL REF PLOS ONE V. 13 03532 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 30192840 JRNL DOI 10.1371/JOURNAL.PONE.0203532 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.8453 - 4.0181 0.99 2796 139 0.1530 0.1665 REMARK 3 2 4.0181 - 3.1894 1.00 2704 154 0.1757 0.2145 REMARK 3 3 3.1894 - 2.7862 1.00 2644 158 0.2035 0.2607 REMARK 3 4 2.7862 - 2.5315 1.00 2668 141 0.2159 0.2580 REMARK 3 5 2.5315 - 2.3500 1.00 2679 128 0.2312 0.2588 REMARK 3 6 2.3500 - 2.2115 1.00 2656 139 0.2387 0.2967 REMARK 3 7 2.2115 - 2.1007 1.00 2622 167 0.2541 0.2806 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2227 REMARK 3 ANGLE : 0.604 3022 REMARK 3 CHIRALITY : 0.047 354 REMARK 3 PLANARITY : 0.004 390 REMARK 3 DIHEDRAL : 12.669 1338 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 113.3131 203.0851 78.2202 REMARK 3 T TENSOR REMARK 3 T11: 0.2291 T22: 0.3183 REMARK 3 T33: 0.3681 T12: -0.0442 REMARK 3 T13: -0.0050 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 8.8117 L22: 5.5452 REMARK 3 L33: 5.5834 L12: -4.0489 REMARK 3 L13: -0.3293 L23: 0.3766 REMARK 3 S TENSOR REMARK 3 S11: 0.1317 S12: -0.2862 S13: 0.5655 REMARK 3 S21: 0.0325 S22: -0.0448 S23: -0.8787 REMARK 3 S31: -0.5773 S32: 0.7751 S33: -0.1981 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 115.9163 185.1224 69.6647 REMARK 3 T TENSOR REMARK 3 T11: 0.3466 T22: 0.4367 REMARK 3 T33: 0.3863 T12: 0.0850 REMARK 3 T13: 0.1053 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 4.5723 L22: 6.7542 REMARK 3 L33: 3.5138 L12: 2.8328 REMARK 3 L13: -0.5711 L23: -1.8391 REMARK 3 S TENSOR REMARK 3 S11: 0.0456 S12: -0.0636 S13: -0.2466 REMARK 3 S21: -0.5458 S22: -0.1781 S23: -0.8955 REMARK 3 S31: 0.2406 S32: 0.7649 S33: 0.0788 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 115.5596 190.0677 78.1300 REMARK 3 T TENSOR REMARK 3 T11: 0.2393 T22: 0.4141 REMARK 3 T33: 0.3896 T12: 0.0659 REMARK 3 T13: 0.0301 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.2840 L22: 2.5280 REMARK 3 L33: 0.7900 L12: 0.3546 REMARK 3 L13: 0.0823 L23: 0.8509 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: -0.0150 S13: -0.1515 REMARK 3 S21: 0.0450 S22: 0.0202 S23: -0.4488 REMARK 3 S31: 0.1167 S32: 0.4799 S33: -0.0363 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.5662 192.2111 80.4924 REMARK 3 T TENSOR REMARK 3 T11: 0.2090 T22: 0.2472 REMARK 3 T33: 0.3030 T12: 0.0268 REMARK 3 T13: 0.0025 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.7663 L22: 3.4008 REMARK 3 L33: 3.8997 L12: 1.4353 REMARK 3 L13: -0.9130 L23: -2.5854 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: 0.1216 S13: -0.2325 REMARK 3 S21: 0.0147 S22: 0.0397 S23: -0.1494 REMARK 3 S31: 0.0162 S32: 0.0497 S33: -0.0410 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.0222 187.3988 72.4492 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.2451 REMARK 3 T33: 0.1666 T12: 0.0221 REMARK 3 T13: -0.0103 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.0465 L22: 2.5236 REMARK 3 L33: 0.5376 L12: -0.3335 REMARK 3 L13: -0.2670 L23: 0.5054 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: 0.1867 S13: -0.0244 REMARK 3 S21: -0.2026 S22: -0.0005 S23: -0.0082 REMARK 3 S31: 0.0212 S32: 0.0354 S33: -0.0192 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 170 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.7237 179.7766 56.0312 REMARK 3 T TENSOR REMARK 3 T11: 0.4278 T22: 0.4723 REMARK 3 T33: 0.1390 T12: 0.1212 REMARK 3 T13: -0.0043 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 2.5323 L22: 8.0334 REMARK 3 L33: 7.4356 L12: 0.8478 REMARK 3 L13: -1.6279 L23: 2.5196 REMARK 3 S TENSOR REMARK 3 S11: 0.4840 S12: 1.0236 S13: -0.0424 REMARK 3 S21: -1.1504 S22: -0.5909 S23: 0.1632 REMARK 3 S31: 0.0288 S32: -0.5728 S33: 0.0108 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.8812 173.3908 73.9233 REMARK 3 T TENSOR REMARK 3 T11: 0.2300 T22: 0.2145 REMARK 3 T33: 0.1953 T12: 0.0528 REMARK 3 T13: 0.0128 T23: -0.0501 REMARK 3 L TENSOR REMARK 3 L11: 1.4965 L22: 0.8143 REMARK 3 L33: 2.5713 L12: 0.0873 REMARK 3 L13: -0.8763 L23: -0.3494 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: 0.2181 S13: -0.2165 REMARK 3 S21: -0.2195 S22: -0.1025 S23: -0.0256 REMARK 3 S31: 0.2012 S32: 0.0399 S33: 0.0598 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.5158 177.6047 74.8822 REMARK 3 T TENSOR REMARK 3 T11: 0.2310 T22: 0.2379 REMARK 3 T33: 0.1790 T12: 0.0339 REMARK 3 T13: 0.0224 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.1817 L22: 3.9773 REMARK 3 L33: 0.2958 L12: 0.3637 REMARK 3 L13: -0.2787 L23: -0.1377 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: 0.0772 S13: -0.1251 REMARK 3 S21: -0.0147 S22: 0.0580 S23: 0.1235 REMARK 3 S31: 0.0586 S32: -0.0979 S33: 0.0420 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.7235 175.7666 66.8159 REMARK 3 T TENSOR REMARK 3 T11: 0.2793 T22: 0.2725 REMARK 3 T33: 0.2735 T12: 0.1119 REMARK 3 T13: 0.0092 T23: -0.0729 REMARK 3 L TENSOR REMARK 3 L11: 2.5616 L22: 2.6083 REMARK 3 L33: 7.6358 L12: 1.9685 REMARK 3 L13: -2.6944 L23: -2.5890 REMARK 3 S TENSOR REMARK 3 S11: -0.1186 S12: 0.1668 S13: -0.0682 REMARK 3 S21: 0.0299 S22: -0.0451 S23: -0.4354 REMARK 3 S31: -0.2431 S32: -0.0092 S33: 0.1590 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19849 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 57.823 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.19400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 1.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CXS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M BIS-TRIS REMARK 280 PH 6.5, 30% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.07650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.07650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.07650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.07650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.07650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.07650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 50.07650 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 50.07650 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 50.07650 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 50.07650 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 50.07650 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 50.07650 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 50.07650 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 50.07650 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 50.07650 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 50.07650 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 50.07650 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 50.07650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 100.15300 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 -100.15300 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -100.15300 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 100.15300 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 554 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 581 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 124 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 252 O HOH A 401 2.02 REMARK 500 O HOH A 410 O HOH A 587 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 66 -177.44 64.93 REMARK 500 THR A 223 -52.63 75.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5CXQ RELATED DB: PDB REMARK 900 5CXQ, 5CXS, 5KO5, 5K06 REMARK 900 RELATED ID: 5CXS RELATED DB: PDB REMARK 900 RELATED ID: 5KO5 RELATED DB: PDB REMARK 900 RELATED ID: 5KO6 RELATED DB: PDB REMARK 900 RELATED ID: 5TBS RELATED DB: PDB REMARK 900 RELATED ID: 5TBU RELATED DB: PDB REMARK 900 RELATED ID: 5TBV RELATED DB: PDB DBREF1 5TBT A 1 287 UNP A0A0U3AGT1_SCHMA DBREF2 5TBT A A0A0U3AGT1 1 287 SEQRES 1 A 287 MET THR THR PRO VAL VAL ALA ASN TYR GLU ASN ALA SER SEQRES 2 A 287 MET ALA ALA ASP TYR ILE LYS ARG VAL SER ASN VAL LEU SEQRES 3 A 287 PRO ASP ILE GLY ILE ILE CYS GLY SER GLY LEU GLY LYS SEQRES 4 A 287 LEU ILE GLU GLU ILE GLU GLU ARG LYS VAL ILE PRO TYR SEQRES 5 A 287 ILE ASN ILE PRO ASN PHE PRO LYS THR THR VAL ALA GLY SEQRES 6 A 287 HIS VAL GLY ASN LEU VAL LEU GLY SER VAL GLY GLY ARG SEQRES 7 A 287 LYS ILE VAL ALA MET GLN GLY ARG LEU HIS MET TYR GLU SEQRES 8 A 287 GLY TYR SER ASN GLN GLU ILE ALA LEU PRO ILE ARG VAL SEQRES 9 A 287 MET LYS LEU LEU GLY VAL ARG VAL LEU LEU ILE THR ASN SEQRES 10 A 287 LEU ALA GLY GLY ILE ASN ARG LYS LEU LYS SER GLY ASP SEQRES 11 A 287 PHE VAL LEU ILE LYS GLY HIS ILE ASN PHE PRO GLY LEU SEQRES 12 A 287 GLY LEU ASN ASN VAL LEU VAL GLY PRO ASN GLN ASP GLU SEQRES 13 A 287 PHE GLY PRO ARG PHE PRO ASP LEU SER ASN ALA TYR ASP SEQRES 14 A 287 ARG LEU LEU GLN GLN LEU ALA LEU LYS ILE ALA GLN GLU SEQRES 15 A 287 ASN ASP PHE GLN ASP LEU VAL HIS GLU GLY VAL TYR ALA SEQRES 16 A 287 PHE ASN GLY GLY PRO THR TYR GLU SER PRO ASP GLU SER SEQRES 17 A 287 ASN MET LEU LEU LYS LEU GLY CYS ASP VAL VAL GLY MET SEQRES 18 A 287 SER THR VAL PRO GLU VAL ILE ILE ALA CYS HIS CYS GLY SEQRES 19 A 287 ILE LYS VAL LEU ALA VAL SER LEU ILE ALA ASN ASN SER SEQRES 20 A 287 ILE LEU ASP ALA GLU ASN ASP VAL SER ILE ASN HIS GLU SEQRES 21 A 287 LYS VAL LEU ALA VAL ALA GLU LYS ARG ALA ASP LEU LEU SEQRES 22 A 287 GLN MET TRP PHE LYS GLU ILE ILE THR ARG LEU PRO LEU SEQRES 23 A 287 ASP HET CTN A 301 17 HET SO4 A 302 5 HETNAM CTN 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE HETNAM SO4 SULFATE ION HETSYN CTN CYTIDINE FORMUL 2 CTN C9 H13 N3 O5 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *220(H2 O) HELIX 1 AA1 ASN A 8 ASN A 24 1 17 HELIX 2 AA2 GLY A 38 ILE A 44 5 7 HELIX 3 AA3 ILE A 53 ILE A 55 5 3 HELIX 4 AA4 HIS A 88 GLY A 92 5 5 HELIX 5 AA5 SER A 94 GLY A 109 1 16 HELIX 6 AA6 PHE A 140 GLY A 144 1 5 HELIX 7 AA7 ASP A 169 ASN A 183 1 15 HELIX 8 AA8 PHE A 185 ASP A 187 5 3 HELIX 9 AA9 SER A 204 LEU A 214 1 11 HELIX 10 AB1 THR A 223 CYS A 233 1 11 HELIX 11 AB2 SER A 247 ASP A 254 1 8 HELIX 12 AB3 ASN A 258 LEU A 284 1 27 SHEET 1 AA110 GLU A 45 PRO A 51 0 SHEET 2 AA110 ASN A 69 VAL A 75 -1 O LEU A 70 N ILE A 50 SHEET 3 AA110 ARG A 78 GLN A 84 -1 O GLN A 84 N ASN A 69 SHEET 4 AA110 ILE A 29 ILE A 32 1 N ILE A 29 O VAL A 81 SHEET 5 AA110 VAL A 112 GLY A 121 1 O VAL A 112 N GLY A 30 SHEET 6 AA110 LYS A 236 ASN A 246 1 O ASN A 245 N GLY A 121 SHEET 7 AA110 PHE A 131 ASN A 139 -1 N VAL A 132 O SER A 241 SHEET 8 AA110 VAL A 189 PHE A 196 1 O HIS A 190 N LEU A 133 SHEET 9 AA110 VAL A 218 GLY A 220 1 O VAL A 218 N ALA A 195 SHEET 10 AA110 VAL A 112 GLY A 121 -1 N GLY A 120 O VAL A 219 CISPEP 1 GLY A 199 PRO A 200 0 4.45 SITE 1 AC1 13 SER A 35 TYR A 90 LEU A 118 GLY A 120 SITE 2 AC1 13 PHE A 161 TYR A 202 GLU A 203 GLY A 220 SITE 3 AC1 13 MET A 221 HIS A 259 VAL A 262 SO4 A 302 SITE 4 AC1 13 HOH A 403 SITE 1 AC2 8 GLY A 34 SER A 35 ARG A 86 HIS A 88 SITE 2 AC2 8 ASN A 117 LEU A 118 SER A 222 CTN A 301 CRYST1 100.153 100.153 100.153 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009985 0.00000