HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-SEP-16 5TC0
TITLE STRUCTURE-BASED OPTIMIZATION OF 1H-IMIDAZOLE-2-CARBOXAMIDES AS AXL
TITLE 2 KINASE INHIBITORS UTILIZING A MER MUTANT SURROGATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE MER;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: UNP RESIDUES 570-864;
COMPND 5 SYNONYM: PROTO-ONCOGENE C-MER,RECEPTOR TYROSINE KINASE MERTK;
COMPND 6 EC: 2.7.10.1;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: MERTK, MER;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSX71
KEYWDS KINASE, INHIBITOR, SURROGATE, ONCOLOGY, TRANSFERASE-TRANSFERASE
KEYWDS 2 INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR I.D.HOFFMAN,J.D.LAWSON
REVDAT 2 06-MAR-24 5TC0 1 REMARK
REVDAT 1 25-JAN-17 5TC0 0
JRNL AUTH W.KEUNG,A.BOLOOR,J.BROWN,A.KIRYANOV,A.GANGLOFF,J.D.LAWSON,
JRNL AUTH 2 R.SKENE,I.HOFFMAN,J.ATIENZA,J.KAHANA,R.DE JONG,P.FARRELL,
JRNL AUTH 3 D.BALAKRISHNA,P.HALKOWYCZ
JRNL TITL STRUCTURE-BASED OPTIMIZATION OF 1H-IMIDAZOLE-2-CARBOXAMIDES
JRNL TITL 2 AS AXL KINASE INHIBITORS UTILIZING A MER MUTANT SURROGATE.
JRNL REF BIOORG. MED. CHEM. LETT. V. 27 1099 2017
JRNL REFN ESSN 1464-3405
JRNL PMID 28082036
JRNL DOI 10.1016/J.BMCL.2016.12.024
REMARK 2
REMARK 2 RESOLUTION. 2.24 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0103
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 83.8
REMARK 3 NUMBER OF REFLECTIONS : 23911
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.229
REMARK 3 R VALUE (WORKING SET) : 0.228
REMARK 3 FREE R VALUE : 0.262
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900
REMARK 3 FREE R VALUE TEST SET COUNT : 1237
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1081
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.90
REMARK 3 BIN R VALUE (WORKING SET) : 0.3140
REMARK 3 BIN FREE R VALUE SET COUNT : 46
REMARK 3 BIN FREE R VALUE : 0.2890
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3939
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 29
REMARK 3 SOLVENT ATOMS : 34
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.15
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 6.24000
REMARK 3 B22 (A**2) : -1.71000
REMARK 3 B33 (A**2) : -2.91000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -4.39000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.391
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.687
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4051 ; 0.008 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 3922 ; 0.003 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5471 ; 1.295 ; 1.990
REMARK 3 BOND ANGLES OTHERS (DEGREES): 9042 ; 1.067 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 5.916 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;34.954 ;23.842
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 749 ;14.358 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.184 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 613 ; 0.074 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4400 ; 0.005 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 877 ; 0.002 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1944 ; 2.298 ; 4.098
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1943 ; 2.299 ; 4.098
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2416 ; 3.784 ; 6.136
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NCS TYPE: LOCAL
REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 5
REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT
REMARK 3 1 A 578 592 B 578 592 1514 0.090 0.050
REMARK 3 2 A 600 619 B 600 619 1870 0.110 0.050
REMARK 3 3 A 641 656 B 641 656 1306 0.170 0.050
REMARK 3 4 A 666 741 B 666 741 8062 0.110 0.050
REMARK 3 5 A 778 860 B 778 860 9522 0.070 0.050
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 578 A 1100
REMARK 3 ORIGIN FOR THE GROUP (A): 18.2682 -2.8269 15.8341
REMARK 3 T TENSOR
REMARK 3 T11: 0.0941 T22: 0.0139
REMARK 3 T33: 0.0718 T12: -0.0032
REMARK 3 T13: 0.0393 T23: 0.0066
REMARK 3 L TENSOR
REMARK 3 L11: 0.1074 L22: 1.7546
REMARK 3 L33: 1.1923 L12: -0.2869
REMARK 3 L13: -0.0360 L23: 0.6756
REMARK 3 S TENSOR
REMARK 3 S11: 0.0229 S12: -0.0128 S13: 0.0188
REMARK 3 S21: -0.0652 S22: -0.0012 S23: 0.1300
REMARK 3 S31: 0.0211 S32: -0.1127 S33: -0.0217
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : WITH TLS ADDED
REMARK 4
REMARK 4 5TC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-16.
REMARK 100 THE DEPOSITION ID IS D_1000224023.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 27-MAY-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 5.0.3
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9764848
REMARK 200 MONOCHROMATOR : ASYMMETRIC CUT SINGLE CRYSTAL
REMARK 200 SI(220)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25183
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 84.0
REMARK 200 DATA REDUNDANCY : 4.100
REMARK 200 R MERGE (I) : 0.07300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28
REMARK 200 COMPLETENESS FOR SHELL (%) : 50.4
REMARK 200 DATA REDUNDANCY IN SHELL : 4.00
REMARK 200 R MERGE FOR SHELL (I) : 0.41800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 44.03
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 29% PEG 400, 0.2M MGCL2, 0,1M TRIS PH
REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.75150
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 551
REMARK 465 GLY A 552
REMARK 465 SER A 553
REMARK 465 SER A 554
REMARK 465 HIS A 555
REMARK 465 HIS A 556
REMARK 465 HIS A 557
REMARK 465 HIS A 558
REMARK 465 HIS A 559
REMARK 465 HIS A 560
REMARK 465 SER A 561
REMARK 465 SER A 562
REMARK 465 GLY A 563
REMARK 465 LEU A 564
REMARK 465 VAL A 565
REMARK 465 PRO A 566
REMARK 465 ARG A 567
REMARK 465 GLY A 568
REMARK 465 SER A 569
REMARK 465 SER A 570
REMARK 465 GLU A 571
REMARK 465 GLU A 572
REMARK 465 LEU A 573
REMARK 465 GLN A 574
REMARK 465 ASN A 575
REMARK 465 LYS A 576
REMARK 465 LEU A 577
REMARK 465 MET A 621
REMARK 465 LYS A 622
REMARK 465 LEU A 623
REMARK 465 ASP A 624
REMARK 465 ASN A 625
REMARK 465 SER A 626
REMARK 465 SER A 627
REMARK 465 GLN A 628
REMARK 465 ARG A 629
REMARK 465 GLU A 630
REMARK 465 ILE A 631
REMARK 465 GLU A 632
REMARK 465 GLU A 633
REMARK 465 PHE A 634
REMARK 465 LEU A 635
REMARK 465 SER A 636
REMARK 465 GLU A 637
REMARK 465 ALA A 638
REMARK 465 ALA A 639
REMARK 465 CYS A 640
REMARK 465 GLY A 743
REMARK 465 LEU A 744
REMARK 465 SER A 745
REMARK 465 LYS A 746
REMARK 465 LYS A 747
REMARK 465 ILE A 748
REMARK 465 TYR A 749
REMARK 465 SER A 750
REMARK 465 GLY A 751
REMARK 465 ASP A 752
REMARK 465 TYR A 753
REMARK 465 TYR A 754
REMARK 465 ARG A 755
REMARK 465 GLN A 756
REMARK 465 GLY A 757
REMARK 465 ARG A 758
REMARK 465 ILE A 759
REMARK 465 ALA A 760
REMARK 465 LYS A 761
REMARK 465 SER A 771
REMARK 465 LEU A 772
REMARK 465 ALA A 773
REMARK 465 ASP A 774
REMARK 465 ARG A 775
REMARK 465 VAL A 776
REMARK 465 TYR A 777
REMARK 465 PRO A 862
REMARK 465 ASP A 863
REMARK 465 VAL A 864
REMARK 465 MET B 551
REMARK 465 GLY B 552
REMARK 465 SER B 553
REMARK 465 SER B 554
REMARK 465 HIS B 555
REMARK 465 HIS B 556
REMARK 465 HIS B 557
REMARK 465 HIS B 558
REMARK 465 HIS B 559
REMARK 465 HIS B 560
REMARK 465 SER B 561
REMARK 465 SER B 562
REMARK 465 GLY B 563
REMARK 465 LEU B 564
REMARK 465 VAL B 565
REMARK 465 PRO B 566
REMARK 465 ARG B 567
REMARK 465 GLY B 568
REMARK 465 SER B 569
REMARK 465 SER B 570
REMARK 465 GLU B 571
REMARK 465 GLU B 572
REMARK 465 LEU B 573
REMARK 465 GLN B 574
REMARK 465 ASN B 575
REMARK 465 LYS B 576
REMARK 465 LEU B 577
REMARK 465 GLY B 594
REMARK 465 GLU B 595
REMARK 465 GLY B 596
REMARK 465 GLU B 597
REMARK 465 PHE B 598
REMARK 465 GLY B 599
REMARK 465 GLU B 658
REMARK 465 MET B 659
REMARK 465 SER B 660
REMARK 465 SER B 661
REMARK 465 GLN B 662
REMARK 465 GLY B 663
REMARK 465 ILE B 664
REMARK 465 PRO B 665
REMARK 465 GLY B 743
REMARK 465 LEU B 744
REMARK 465 SER B 745
REMARK 465 LYS B 746
REMARK 465 LYS B 747
REMARK 465 ILE B 748
REMARK 465 TYR B 749
REMARK 465 SER B 750
REMARK 465 GLY B 751
REMARK 465 ASP B 752
REMARK 465 TYR B 753
REMARK 465 TYR B 754
REMARK 465 ARG B 755
REMARK 465 GLN B 756
REMARK 465 GLY B 757
REMARK 465 ARG B 758
REMARK 465 ILE B 759
REMARK 465 ALA B 760
REMARK 465 LYS B 761
REMARK 465 MET B 762
REMARK 465 PRO B 862
REMARK 465 ASP B 863
REMARK 465 VAL B 864
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 HIS A 694 105.76 -43.50
REMARK 500 ASP A 723 41.37 -163.44
REMARK 500 ASP A 741 53.50 72.06
REMARK 500 TYR A 801 63.58 64.16
REMARK 500 GLU A 823 -71.68 -48.77
REMARK 500 HIS B 694 105.67 -43.67
REMARK 500 ASP B 723 40.81 -165.31
REMARK 500 VAL B 776 136.01 -33.81
REMARK 500 TYR B 801 63.85 63.27
REMARK 500 GLU B 823 -70.95 -48.68
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 79Y A 1100
DBREF 5TC0 A 570 864 UNP Q12866 MERTK_HUMAN 570 864
DBREF 5TC0 B 570 864 UNP Q12866 MERTK_HUMAN 570 864
SEQADV 5TC0 MET A 551 UNP Q12866 INITIATING METHIONINE
SEQADV 5TC0 GLY A 552 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 SER A 553 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 SER A 554 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 HIS A 555 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 HIS A 556 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 HIS A 557 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 HIS A 558 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 HIS A 559 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 HIS A 560 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 SER A 561 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 SER A 562 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 GLY A 563 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 LEU A 564 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 VAL A 565 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 PRO A 566 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 ARG A 567 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 GLY A 568 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 SER A 569 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 MET A 650 UNP Q12866 ILE 650 CONFLICT
SEQADV 5TC0 MET B 551 UNP Q12866 INITIATING METHIONINE
SEQADV 5TC0 GLY B 552 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 SER B 553 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 SER B 554 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 HIS B 555 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 HIS B 556 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 HIS B 557 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 HIS B 558 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 HIS B 559 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 HIS B 560 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 SER B 561 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 SER B 562 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 GLY B 563 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 LEU B 564 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 VAL B 565 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 PRO B 566 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 ARG B 567 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 GLY B 568 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 SER B 569 UNP Q12866 EXPRESSION TAG
SEQADV 5TC0 MET B 650 UNP Q12866 ILE 650 CONFLICT
SEQRES 1 A 314 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 314 LEU VAL PRO ARG GLY SER SER GLU GLU LEU GLN ASN LYS
SEQRES 3 A 314 LEU GLU ASP VAL VAL ILE ASP ARG ASN LEU LEU ILE LEU
SEQRES 4 A 314 GLY LYS ILE LEU GLY GLU GLY GLU PHE GLY SER VAL MET
SEQRES 5 A 314 GLU GLY ASN LEU LYS GLN GLU ASP GLY THR SER LEU LYS
SEQRES 6 A 314 VAL ALA VAL LYS THR MET LYS LEU ASP ASN SER SER GLN
SEQRES 7 A 314 ARG GLU ILE GLU GLU PHE LEU SER GLU ALA ALA CYS MET
SEQRES 8 A 314 LYS ASP PHE SER HIS PRO ASN VAL MET ARG LEU LEU GLY
SEQRES 9 A 314 VAL CYS ILE GLU MET SER SER GLN GLY ILE PRO LYS PRO
SEQRES 10 A 314 MET VAL ILE LEU PRO PHE MET LYS TYR GLY ASP LEU HIS
SEQRES 11 A 314 THR TYR LEU LEU TYR SER ARG LEU GLU THR GLY PRO LYS
SEQRES 12 A 314 HIS ILE PRO LEU GLN THR LEU LEU LYS PHE MET VAL ASP
SEQRES 13 A 314 ILE ALA LEU GLY MET GLU TYR LEU SER ASN ARG ASN PHE
SEQRES 14 A 314 LEU HIS ARG ASP LEU ALA ALA ARG ASN CYS MET LEU ARG
SEQRES 15 A 314 ASP ASP MET THR VAL CYS VAL ALA ASP PHE GLY LEU SER
SEQRES 16 A 314 LYS LYS ILE TYR SER GLY ASP TYR TYR ARG GLN GLY ARG
SEQRES 17 A 314 ILE ALA LYS MET PRO VAL LYS TRP ILE ALA ILE GLU SER
SEQRES 18 A 314 LEU ALA ASP ARG VAL TYR THR SER LYS SER ASP VAL TRP
SEQRES 19 A 314 ALA PHE GLY VAL THR MET TRP GLU ILE ALA THR ARG GLY
SEQRES 20 A 314 MET THR PRO TYR PRO GLY VAL GLN ASN HIS GLU MET TYR
SEQRES 21 A 314 ASP TYR LEU LEU HIS GLY HIS ARG LEU LYS GLN PRO GLU
SEQRES 22 A 314 ASP CYS LEU ASP GLU LEU TYR GLU ILE MET TYR SER CYS
SEQRES 23 A 314 TRP ARG THR ASP PRO LEU ASP ARG PRO THR PHE SER VAL
SEQRES 24 A 314 LEU ARG LEU GLN LEU GLU LYS LEU LEU GLU SER LEU PRO
SEQRES 25 A 314 ASP VAL
SEQRES 1 B 314 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 B 314 LEU VAL PRO ARG GLY SER SER GLU GLU LEU GLN ASN LYS
SEQRES 3 B 314 LEU GLU ASP VAL VAL ILE ASP ARG ASN LEU LEU ILE LEU
SEQRES 4 B 314 GLY LYS ILE LEU GLY GLU GLY GLU PHE GLY SER VAL MET
SEQRES 5 B 314 GLU GLY ASN LEU LYS GLN GLU ASP GLY THR SER LEU LYS
SEQRES 6 B 314 VAL ALA VAL LYS THR MET LYS LEU ASP ASN SER SER GLN
SEQRES 7 B 314 ARG GLU ILE GLU GLU PHE LEU SER GLU ALA ALA CYS MET
SEQRES 8 B 314 LYS ASP PHE SER HIS PRO ASN VAL MET ARG LEU LEU GLY
SEQRES 9 B 314 VAL CYS ILE GLU MET SER SER GLN GLY ILE PRO LYS PRO
SEQRES 10 B 314 MET VAL ILE LEU PRO PHE MET LYS TYR GLY ASP LEU HIS
SEQRES 11 B 314 THR TYR LEU LEU TYR SER ARG LEU GLU THR GLY PRO LYS
SEQRES 12 B 314 HIS ILE PRO LEU GLN THR LEU LEU LYS PHE MET VAL ASP
SEQRES 13 B 314 ILE ALA LEU GLY MET GLU TYR LEU SER ASN ARG ASN PHE
SEQRES 14 B 314 LEU HIS ARG ASP LEU ALA ALA ARG ASN CYS MET LEU ARG
SEQRES 15 B 314 ASP ASP MET THR VAL CYS VAL ALA ASP PHE GLY LEU SER
SEQRES 16 B 314 LYS LYS ILE TYR SER GLY ASP TYR TYR ARG GLN GLY ARG
SEQRES 17 B 314 ILE ALA LYS MET PRO VAL LYS TRP ILE ALA ILE GLU SER
SEQRES 18 B 314 LEU ALA ASP ARG VAL TYR THR SER LYS SER ASP VAL TRP
SEQRES 19 B 314 ALA PHE GLY VAL THR MET TRP GLU ILE ALA THR ARG GLY
SEQRES 20 B 314 MET THR PRO TYR PRO GLY VAL GLN ASN HIS GLU MET TYR
SEQRES 21 B 314 ASP TYR LEU LEU HIS GLY HIS ARG LEU LYS GLN PRO GLU
SEQRES 22 B 314 ASP CYS LEU ASP GLU LEU TYR GLU ILE MET TYR SER CYS
SEQRES 23 B 314 TRP ARG THR ASP PRO LEU ASP ARG PRO THR PHE SER VAL
SEQRES 24 B 314 LEU ARG LEU GLN LEU GLU LYS LEU LEU GLU SER LEU PRO
SEQRES 25 B 314 ASP VAL
HET 79Y A1100 29
HETNAM 79Y N-(2-{4-[(2S)-4-(METHYLSULFONYL)MORPHOLIN-2-YL]-1,3-
HETNAM 2 79Y THIAZOL-2-YL}PHENYL)-1H-IMIDAZOLE-2-CARBOXAMIDE
FORMUL 3 79Y C18 H19 N5 O4 S2
FORMUL 4 HOH *34(H2 O)
HELIX 1 AA1 ASP A 583 ASN A 585 5 3
HELIX 2 AA2 ASP A 678 ARG A 687 1 10
HELIX 3 AA3 PRO A 696 ARG A 717 1 22
HELIX 4 AA4 ALA A 725 ARG A 727 5 3
HELIX 5 AA5 PRO A 763 ILE A 767 5 5
HELIX 6 AA6 SER A 779 THR A 795 1 17
HELIX 7 AA7 GLN A 805 HIS A 807 5 3
HELIX 8 AA8 GLU A 808 HIS A 815 1 8
HELIX 9 AA9 LEU A 826 CYS A 836 1 11
HELIX 10 AB1 ASP A 840 ARG A 844 5 5
HELIX 11 AB2 THR A 846 SER A 860 1 15
HELIX 12 AB3 ASP B 583 ASN B 585 5 3
HELIX 13 AB4 GLN B 628 PHE B 644 1 17
HELIX 14 AB5 ASP B 678 ARG B 687 1 10
HELIX 15 AB6 PRO B 696 ARG B 717 1 22
HELIX 16 AB7 ALA B 725 ARG B 727 5 3
HELIX 17 AB8 PRO B 763 ILE B 767 5 5
HELIX 18 AB9 ALA B 768 ASP B 774 1 7
HELIX 19 AC1 THR B 778 THR B 795 1 18
HELIX 20 AC2 GLN B 805 HIS B 807 5 3
HELIX 21 AC3 GLU B 808 HIS B 815 1 8
HELIX 22 AC4 LEU B 826 CYS B 836 1 11
HELIX 23 AC5 ASP B 840 ARG B 844 5 5
HELIX 24 AC6 THR B 846 SER B 860 1 15
SHEET 1 AA1 5 LEU A 587 GLU A 595 0
SHEET 2 AA1 5 SER A 600 LYS A 607 -1 O VAL A 601 N LEU A 593
SHEET 3 AA1 5 SER A 613 LYS A 619 -1 O LEU A 614 N LEU A 606
SHEET 4 AA1 5 PRO A 665 PRO A 672 -1 O LEU A 671 N ALA A 617
SHEET 5 AA1 5 GLY A 654 MET A 659 -1 N GLY A 654 O ILE A 670
SHEET 1 AA2 2 CYS A 729 LEU A 731 0
SHEET 2 AA2 2 VAL A 737 VAL A 739 -1 O CYS A 738 N MET A 730
SHEET 1 AA3 5 LEU B 587 ILE B 592 0
SHEET 2 AA3 5 VAL B 601 LYS B 607 -1 O GLU B 603 N GLY B 590
SHEET 3 AA3 5 SER B 613 THR B 620 -1 O LEU B 614 N LEU B 606
SHEET 4 AA3 5 MET B 668 PRO B 672 -1 O LEU B 671 N ALA B 617
SHEET 5 AA3 5 GLY B 654 CYS B 656 -1 N GLY B 654 O ILE B 670
SHEET 1 AA4 2 CYS B 729 LEU B 731 0
SHEET 2 AA4 2 VAL B 737 VAL B 739 -1 O CYS B 738 N MET B 730
SITE 1 AC1 12 VAL A 601 ALA A 617 LYS A 619 MET A 650
SITE 2 AC1 12 LEU A 671 PRO A 672 PHE A 673 MET A 674
SITE 3 AC1 12 GLY A 677 ASN A 728 MET A 730 ASP A 741
CRYST1 50.406 91.503 69.543 90.00 99.47 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019839 0.000000 0.003310 0.00000
SCALE2 0.000000 0.010929 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014578 0.00000