HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-SEP-16 5TC0 TITLE STRUCTURE-BASED OPTIMIZATION OF 1H-IMIDAZOLE-2-CARBOXAMIDES AS AXL TITLE 2 KINASE INHIBITORS UTILIZING A MER MUTANT SURROGATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE MER; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 570-864; COMPND 5 SYNONYM: PROTO-ONCOGENE C-MER,RECEPTOR TYROSINE KINASE MERTK; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MERTK, MER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSX71 KEYWDS KINASE, INHIBITOR, SURROGATE, ONCOLOGY, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.D.HOFFMAN,J.D.LAWSON REVDAT 2 06-MAR-24 5TC0 1 REMARK REVDAT 1 25-JAN-17 5TC0 0 JRNL AUTH W.KEUNG,A.BOLOOR,J.BROWN,A.KIRYANOV,A.GANGLOFF,J.D.LAWSON, JRNL AUTH 2 R.SKENE,I.HOFFMAN,J.ATIENZA,J.KAHANA,R.DE JONG,P.FARRELL, JRNL AUTH 3 D.BALAKRISHNA,P.HALKOWYCZ JRNL TITL STRUCTURE-BASED OPTIMIZATION OF 1H-IMIDAZOLE-2-CARBOXAMIDES JRNL TITL 2 AS AXL KINASE INHIBITORS UTILIZING A MER MUTANT SURROGATE. JRNL REF BIOORG. MED. CHEM. LETT. V. 27 1099 2017 JRNL REFN ESSN 1464-3405 JRNL PMID 28082036 JRNL DOI 10.1016/J.BMCL.2016.12.024 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.8 REMARK 3 NUMBER OF REFLECTIONS : 23911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1237 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1081 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.24000 REMARK 3 B22 (A**2) : -1.71000 REMARK 3 B33 (A**2) : -2.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.391 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.259 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.687 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4051 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3922 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5471 ; 1.295 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9042 ; 1.067 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 5.916 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;34.954 ;23.842 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 749 ;14.358 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.184 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 613 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4400 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 877 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1944 ; 2.298 ; 4.098 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1943 ; 2.299 ; 4.098 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2416 ; 3.784 ; 6.136 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 5 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 578 592 B 578 592 1514 0.090 0.050 REMARK 3 2 A 600 619 B 600 619 1870 0.110 0.050 REMARK 3 3 A 641 656 B 641 656 1306 0.170 0.050 REMARK 3 4 A 666 741 B 666 741 8062 0.110 0.050 REMARK 3 5 A 778 860 B 778 860 9522 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 578 A 1100 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2682 -2.8269 15.8341 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.0139 REMARK 3 T33: 0.0718 T12: -0.0032 REMARK 3 T13: 0.0393 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.1074 L22: 1.7546 REMARK 3 L33: 1.1923 L12: -0.2869 REMARK 3 L13: -0.0360 L23: 0.6756 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -0.0128 S13: 0.0188 REMARK 3 S21: -0.0652 S22: -0.0012 S23: 0.1300 REMARK 3 S31: 0.0211 S32: -0.1127 S33: -0.0217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5TC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9764848 REMARK 200 MONOCHROMATOR : ASYMMETRIC CUT SINGLE CRYSTAL REMARK 200 SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25183 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29% PEG 400, 0.2M MGCL2, 0,1M TRIS PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.75150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 551 REMARK 465 GLY A 552 REMARK 465 SER A 553 REMARK 465 SER A 554 REMARK 465 HIS A 555 REMARK 465 HIS A 556 REMARK 465 HIS A 557 REMARK 465 HIS A 558 REMARK 465 HIS A 559 REMARK 465 HIS A 560 REMARK 465 SER A 561 REMARK 465 SER A 562 REMARK 465 GLY A 563 REMARK 465 LEU A 564 REMARK 465 VAL A 565 REMARK 465 PRO A 566 REMARK 465 ARG A 567 REMARK 465 GLY A 568 REMARK 465 SER A 569 REMARK 465 SER A 570 REMARK 465 GLU A 571 REMARK 465 GLU A 572 REMARK 465 LEU A 573 REMARK 465 GLN A 574 REMARK 465 ASN A 575 REMARK 465 LYS A 576 REMARK 465 LEU A 577 REMARK 465 MET A 621 REMARK 465 LYS A 622 REMARK 465 LEU A 623 REMARK 465 ASP A 624 REMARK 465 ASN A 625 REMARK 465 SER A 626 REMARK 465 SER A 627 REMARK 465 GLN A 628 REMARK 465 ARG A 629 REMARK 465 GLU A 630 REMARK 465 ILE A 631 REMARK 465 GLU A 632 REMARK 465 GLU A 633 REMARK 465 PHE A 634 REMARK 465 LEU A 635 REMARK 465 SER A 636 REMARK 465 GLU A 637 REMARK 465 ALA A 638 REMARK 465 ALA A 639 REMARK 465 CYS A 640 REMARK 465 GLY A 743 REMARK 465 LEU A 744 REMARK 465 SER A 745 REMARK 465 LYS A 746 REMARK 465 LYS A 747 REMARK 465 ILE A 748 REMARK 465 TYR A 749 REMARK 465 SER A 750 REMARK 465 GLY A 751 REMARK 465 ASP A 752 REMARK 465 TYR A 753 REMARK 465 TYR A 754 REMARK 465 ARG A 755 REMARK 465 GLN A 756 REMARK 465 GLY A 757 REMARK 465 ARG A 758 REMARK 465 ILE A 759 REMARK 465 ALA A 760 REMARK 465 LYS A 761 REMARK 465 SER A 771 REMARK 465 LEU A 772 REMARK 465 ALA A 773 REMARK 465 ASP A 774 REMARK 465 ARG A 775 REMARK 465 VAL A 776 REMARK 465 TYR A 777 REMARK 465 PRO A 862 REMARK 465 ASP A 863 REMARK 465 VAL A 864 REMARK 465 MET B 551 REMARK 465 GLY B 552 REMARK 465 SER B 553 REMARK 465 SER B 554 REMARK 465 HIS B 555 REMARK 465 HIS B 556 REMARK 465 HIS B 557 REMARK 465 HIS B 558 REMARK 465 HIS B 559 REMARK 465 HIS B 560 REMARK 465 SER B 561 REMARK 465 SER B 562 REMARK 465 GLY B 563 REMARK 465 LEU B 564 REMARK 465 VAL B 565 REMARK 465 PRO B 566 REMARK 465 ARG B 567 REMARK 465 GLY B 568 REMARK 465 SER B 569 REMARK 465 SER B 570 REMARK 465 GLU B 571 REMARK 465 GLU B 572 REMARK 465 LEU B 573 REMARK 465 GLN B 574 REMARK 465 ASN B 575 REMARK 465 LYS B 576 REMARK 465 LEU B 577 REMARK 465 GLY B 594 REMARK 465 GLU B 595 REMARK 465 GLY B 596 REMARK 465 GLU B 597 REMARK 465 PHE B 598 REMARK 465 GLY B 599 REMARK 465 GLU B 658 REMARK 465 MET B 659 REMARK 465 SER B 660 REMARK 465 SER B 661 REMARK 465 GLN B 662 REMARK 465 GLY B 663 REMARK 465 ILE B 664 REMARK 465 PRO B 665 REMARK 465 GLY B 743 REMARK 465 LEU B 744 REMARK 465 SER B 745 REMARK 465 LYS B 746 REMARK 465 LYS B 747 REMARK 465 ILE B 748 REMARK 465 TYR B 749 REMARK 465 SER B 750 REMARK 465 GLY B 751 REMARK 465 ASP B 752 REMARK 465 TYR B 753 REMARK 465 TYR B 754 REMARK 465 ARG B 755 REMARK 465 GLN B 756 REMARK 465 GLY B 757 REMARK 465 ARG B 758 REMARK 465 ILE B 759 REMARK 465 ALA B 760 REMARK 465 LYS B 761 REMARK 465 MET B 762 REMARK 465 PRO B 862 REMARK 465 ASP B 863 REMARK 465 VAL B 864 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 694 105.76 -43.50 REMARK 500 ASP A 723 41.37 -163.44 REMARK 500 ASP A 741 53.50 72.06 REMARK 500 TYR A 801 63.58 64.16 REMARK 500 GLU A 823 -71.68 -48.77 REMARK 500 HIS B 694 105.67 -43.67 REMARK 500 ASP B 723 40.81 -165.31 REMARK 500 VAL B 776 136.01 -33.81 REMARK 500 TYR B 801 63.85 63.27 REMARK 500 GLU B 823 -70.95 -48.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 79Y A 1100 DBREF 5TC0 A 570 864 UNP Q12866 MERTK_HUMAN 570 864 DBREF 5TC0 B 570 864 UNP Q12866 MERTK_HUMAN 570 864 SEQADV 5TC0 MET A 551 UNP Q12866 INITIATING METHIONINE SEQADV 5TC0 GLY A 552 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 SER A 553 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 SER A 554 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 HIS A 555 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 HIS A 556 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 HIS A 557 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 HIS A 558 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 HIS A 559 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 HIS A 560 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 SER A 561 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 SER A 562 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 GLY A 563 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 LEU A 564 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 VAL A 565 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 PRO A 566 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 ARG A 567 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 GLY A 568 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 SER A 569 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 MET A 650 UNP Q12866 ILE 650 CONFLICT SEQADV 5TC0 MET B 551 UNP Q12866 INITIATING METHIONINE SEQADV 5TC0 GLY B 552 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 SER B 553 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 SER B 554 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 HIS B 555 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 HIS B 556 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 HIS B 557 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 HIS B 558 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 HIS B 559 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 HIS B 560 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 SER B 561 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 SER B 562 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 GLY B 563 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 LEU B 564 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 VAL B 565 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 PRO B 566 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 ARG B 567 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 GLY B 568 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 SER B 569 UNP Q12866 EXPRESSION TAG SEQADV 5TC0 MET B 650 UNP Q12866 ILE 650 CONFLICT SEQRES 1 A 314 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 314 LEU VAL PRO ARG GLY SER SER GLU GLU LEU GLN ASN LYS SEQRES 3 A 314 LEU GLU ASP VAL VAL ILE ASP ARG ASN LEU LEU ILE LEU SEQRES 4 A 314 GLY LYS ILE LEU GLY GLU GLY GLU PHE GLY SER VAL MET SEQRES 5 A 314 GLU GLY ASN LEU LYS GLN GLU ASP GLY THR SER LEU LYS SEQRES 6 A 314 VAL ALA VAL LYS THR MET LYS LEU ASP ASN SER SER GLN SEQRES 7 A 314 ARG GLU ILE GLU GLU PHE LEU SER GLU ALA ALA CYS MET SEQRES 8 A 314 LYS ASP PHE SER HIS PRO ASN VAL MET ARG LEU LEU GLY SEQRES 9 A 314 VAL CYS ILE GLU MET SER SER GLN GLY ILE PRO LYS PRO SEQRES 10 A 314 MET VAL ILE LEU PRO PHE MET LYS TYR GLY ASP LEU HIS SEQRES 11 A 314 THR TYR LEU LEU TYR SER ARG LEU GLU THR GLY PRO LYS SEQRES 12 A 314 HIS ILE PRO LEU GLN THR LEU LEU LYS PHE MET VAL ASP SEQRES 13 A 314 ILE ALA LEU GLY MET GLU TYR LEU SER ASN ARG ASN PHE SEQRES 14 A 314 LEU HIS ARG ASP LEU ALA ALA ARG ASN CYS MET LEU ARG SEQRES 15 A 314 ASP ASP MET THR VAL CYS VAL ALA ASP PHE GLY LEU SER SEQRES 16 A 314 LYS LYS ILE TYR SER GLY ASP TYR TYR ARG GLN GLY ARG SEQRES 17 A 314 ILE ALA LYS MET PRO VAL LYS TRP ILE ALA ILE GLU SER SEQRES 18 A 314 LEU ALA ASP ARG VAL TYR THR SER LYS SER ASP VAL TRP SEQRES 19 A 314 ALA PHE GLY VAL THR MET TRP GLU ILE ALA THR ARG GLY SEQRES 20 A 314 MET THR PRO TYR PRO GLY VAL GLN ASN HIS GLU MET TYR SEQRES 21 A 314 ASP TYR LEU LEU HIS GLY HIS ARG LEU LYS GLN PRO GLU SEQRES 22 A 314 ASP CYS LEU ASP GLU LEU TYR GLU ILE MET TYR SER CYS SEQRES 23 A 314 TRP ARG THR ASP PRO LEU ASP ARG PRO THR PHE SER VAL SEQRES 24 A 314 LEU ARG LEU GLN LEU GLU LYS LEU LEU GLU SER LEU PRO SEQRES 25 A 314 ASP VAL SEQRES 1 B 314 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 314 LEU VAL PRO ARG GLY SER SER GLU GLU LEU GLN ASN LYS SEQRES 3 B 314 LEU GLU ASP VAL VAL ILE ASP ARG ASN LEU LEU ILE LEU SEQRES 4 B 314 GLY LYS ILE LEU GLY GLU GLY GLU PHE GLY SER VAL MET SEQRES 5 B 314 GLU GLY ASN LEU LYS GLN GLU ASP GLY THR SER LEU LYS SEQRES 6 B 314 VAL ALA VAL LYS THR MET LYS LEU ASP ASN SER SER GLN SEQRES 7 B 314 ARG GLU ILE GLU GLU PHE LEU SER GLU ALA ALA CYS MET SEQRES 8 B 314 LYS ASP PHE SER HIS PRO ASN VAL MET ARG LEU LEU GLY SEQRES 9 B 314 VAL CYS ILE GLU MET SER SER GLN GLY ILE PRO LYS PRO SEQRES 10 B 314 MET VAL ILE LEU PRO PHE MET LYS TYR GLY ASP LEU HIS SEQRES 11 B 314 THR TYR LEU LEU TYR SER ARG LEU GLU THR GLY PRO LYS SEQRES 12 B 314 HIS ILE PRO LEU GLN THR LEU LEU LYS PHE MET VAL ASP SEQRES 13 B 314 ILE ALA LEU GLY MET GLU TYR LEU SER ASN ARG ASN PHE SEQRES 14 B 314 LEU HIS ARG ASP LEU ALA ALA ARG ASN CYS MET LEU ARG SEQRES 15 B 314 ASP ASP MET THR VAL CYS VAL ALA ASP PHE GLY LEU SER SEQRES 16 B 314 LYS LYS ILE TYR SER GLY ASP TYR TYR ARG GLN GLY ARG SEQRES 17 B 314 ILE ALA LYS MET PRO VAL LYS TRP ILE ALA ILE GLU SER SEQRES 18 B 314 LEU ALA ASP ARG VAL TYR THR SER LYS SER ASP VAL TRP SEQRES 19 B 314 ALA PHE GLY VAL THR MET TRP GLU ILE ALA THR ARG GLY SEQRES 20 B 314 MET THR PRO TYR PRO GLY VAL GLN ASN HIS GLU MET TYR SEQRES 21 B 314 ASP TYR LEU LEU HIS GLY HIS ARG LEU LYS GLN PRO GLU SEQRES 22 B 314 ASP CYS LEU ASP GLU LEU TYR GLU ILE MET TYR SER CYS SEQRES 23 B 314 TRP ARG THR ASP PRO LEU ASP ARG PRO THR PHE SER VAL SEQRES 24 B 314 LEU ARG LEU GLN LEU GLU LYS LEU LEU GLU SER LEU PRO SEQRES 25 B 314 ASP VAL HET 79Y A1100 29 HETNAM 79Y N-(2-{4-[(2S)-4-(METHYLSULFONYL)MORPHOLIN-2-YL]-1,3- HETNAM 2 79Y THIAZOL-2-YL}PHENYL)-1H-IMIDAZOLE-2-CARBOXAMIDE FORMUL 3 79Y C18 H19 N5 O4 S2 FORMUL 4 HOH *34(H2 O) HELIX 1 AA1 ASP A 583 ASN A 585 5 3 HELIX 2 AA2 ASP A 678 ARG A 687 1 10 HELIX 3 AA3 PRO A 696 ARG A 717 1 22 HELIX 4 AA4 ALA A 725 ARG A 727 5 3 HELIX 5 AA5 PRO A 763 ILE A 767 5 5 HELIX 6 AA6 SER A 779 THR A 795 1 17 HELIX 7 AA7 GLN A 805 HIS A 807 5 3 HELIX 8 AA8 GLU A 808 HIS A 815 1 8 HELIX 9 AA9 LEU A 826 CYS A 836 1 11 HELIX 10 AB1 ASP A 840 ARG A 844 5 5 HELIX 11 AB2 THR A 846 SER A 860 1 15 HELIX 12 AB3 ASP B 583 ASN B 585 5 3 HELIX 13 AB4 GLN B 628 PHE B 644 1 17 HELIX 14 AB5 ASP B 678 ARG B 687 1 10 HELIX 15 AB6 PRO B 696 ARG B 717 1 22 HELIX 16 AB7 ALA B 725 ARG B 727 5 3 HELIX 17 AB8 PRO B 763 ILE B 767 5 5 HELIX 18 AB9 ALA B 768 ASP B 774 1 7 HELIX 19 AC1 THR B 778 THR B 795 1 18 HELIX 20 AC2 GLN B 805 HIS B 807 5 3 HELIX 21 AC3 GLU B 808 HIS B 815 1 8 HELIX 22 AC4 LEU B 826 CYS B 836 1 11 HELIX 23 AC5 ASP B 840 ARG B 844 5 5 HELIX 24 AC6 THR B 846 SER B 860 1 15 SHEET 1 AA1 5 LEU A 587 GLU A 595 0 SHEET 2 AA1 5 SER A 600 LYS A 607 -1 O VAL A 601 N LEU A 593 SHEET 3 AA1 5 SER A 613 LYS A 619 -1 O LEU A 614 N LEU A 606 SHEET 4 AA1 5 PRO A 665 PRO A 672 -1 O LEU A 671 N ALA A 617 SHEET 5 AA1 5 GLY A 654 MET A 659 -1 N GLY A 654 O ILE A 670 SHEET 1 AA2 2 CYS A 729 LEU A 731 0 SHEET 2 AA2 2 VAL A 737 VAL A 739 -1 O CYS A 738 N MET A 730 SHEET 1 AA3 5 LEU B 587 ILE B 592 0 SHEET 2 AA3 5 VAL B 601 LYS B 607 -1 O GLU B 603 N GLY B 590 SHEET 3 AA3 5 SER B 613 THR B 620 -1 O LEU B 614 N LEU B 606 SHEET 4 AA3 5 MET B 668 PRO B 672 -1 O LEU B 671 N ALA B 617 SHEET 5 AA3 5 GLY B 654 CYS B 656 -1 N GLY B 654 O ILE B 670 SHEET 1 AA4 2 CYS B 729 LEU B 731 0 SHEET 2 AA4 2 VAL B 737 VAL B 739 -1 O CYS B 738 N MET B 730 SITE 1 AC1 12 VAL A 601 ALA A 617 LYS A 619 MET A 650 SITE 2 AC1 12 LEU A 671 PRO A 672 PHE A 673 MET A 674 SITE 3 AC1 12 GLY A 677 ASN A 728 MET A 730 ASP A 741 CRYST1 50.406 91.503 69.543 90.00 99.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019839 0.000000 0.003310 0.00000 SCALE2 0.000000 0.010929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014578 0.00000