HEADER HYDROLASE 14-SEP-16 5TCD TITLE HUMAN ALKALINE SPHINGOMYELINASE (ENPP7) IN COMPLEX WITH PHOSPHOCHOLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY COMPND 3 MEMBER 7; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 22-433; COMPND 6 SYNONYM: NPP-7,ALKALINE SPHINGOMYELIN PHOSPHODIESTERASE,INTESTINAL COMPND 7 ALKALINE SPHINGOMYELINASE,ALK-SMASE; COMPND 8 EC: 3.1.4.12; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ENPP7, UNQ3077/PRO9912; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SPHINGOMYELINASE, SPHINGOMYELIN, PHOSPHOCHOLINE, KEYWDS 2 GLYCOSYLPHOSPHATIDYLINOSITOL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GORELIK,F.LIU,K.ILLES,B.NAGAR REVDAT 4 29-JUL-20 5TCD 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 08-JAN-20 5TCD 1 REMARK REVDAT 2 10-MAY-17 5TCD 1 JRNL REVDAT 1 22-MAR-17 5TCD 0 JRNL AUTH A.GORELIK,F.LIU,K.ILLES,B.NAGAR JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN ALKALINE SPHINGOMYELINASE JRNL TITL 2 PROVIDES INSIGHTS INTO SUBSTRATE RECOGNITION. JRNL REF J. BIOL. CHEM. V. 292 7087 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28292932 JRNL DOI 10.1074/JBC.M116.769273 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 72.4 REMARK 3 NUMBER OF REFLECTIONS : 39213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.120 REMARK 3 FREE R VALUE TEST SET COUNT : 3186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4492 - 6.8132 0.99 2173 185 0.1990 0.2371 REMARK 3 2 6.8132 - 5.4127 1.00 2152 187 0.1768 0.1782 REMARK 3 3 5.4127 - 4.7299 1.00 2152 192 0.1306 0.1574 REMARK 3 4 4.7299 - 4.2980 1.00 2176 184 0.1271 0.1498 REMARK 3 5 4.2980 - 3.9903 1.00 2168 196 0.1344 0.1952 REMARK 3 6 3.9903 - 3.7553 1.00 2149 196 0.1458 0.1605 REMARK 3 7 3.7553 - 3.5673 1.00 2174 194 0.1440 0.1792 REMARK 3 8 3.5673 - 3.4121 1.00 2148 190 0.1671 0.2200 REMARK 3 9 3.4121 - 3.2809 1.00 2138 186 0.1801 0.2270 REMARK 3 10 3.2809 - 3.1677 0.99 2150 183 0.1905 0.2477 REMARK 3 11 3.1677 - 3.0687 0.92 2029 176 0.1992 0.2452 REMARK 3 12 3.0687 - 2.9810 0.83 1796 150 0.2155 0.2363 REMARK 3 13 2.9810 - 2.9026 0.77 1648 152 0.2186 0.2317 REMARK 3 14 2.9026 - 2.8318 0.72 1602 134 0.2173 0.2972 REMARK 3 15 2.8318 - 2.7674 0.68 1457 134 0.2292 0.2836 REMARK 3 16 2.7674 - 2.7085 0.57 1214 110 0.2341 0.2674 REMARK 3 17 2.7085 - 2.6544 0.47 1014 102 0.2270 0.3107 REMARK 3 18 2.6544 - 2.6043 0.39 840 75 0.2373 0.2778 REMARK 3 19 2.6043 - 2.5578 0.33 721 69 0.2226 0.2311 REMARK 3 20 2.5578 - 2.5144 0.30 649 53 0.2182 0.2580 REMARK 3 21 2.5144 - 2.4739 0.26 560 47 0.2561 0.2272 REMARK 3 22 2.4739 - 2.4358 0.24 502 47 0.2241 0.2744 REMARK 3 23 2.4358 - 2.4000 0.20 415 44 0.2426 0.3279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3409 REMARK 3 ANGLE : 0.610 4649 REMARK 3 CHIRALITY : 0.041 519 REMARK 3 PLANARITY : 0.003 590 REMARK 3 DIHEDRAL : 12.961 1983 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8492 30.3357 44.2100 REMARK 3 T TENSOR REMARK 3 T11: 0.3336 T22: 0.1893 REMARK 3 T33: 0.1277 T12: 0.0030 REMARK 3 T13: -0.0291 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.8898 L22: 1.1465 REMARK 3 L33: 3.7870 L12: 0.5283 REMARK 3 L13: 0.2757 L23: 1.7391 REMARK 3 S TENSOR REMARK 3 S11: 0.1853 S12: 0.2044 S13: -0.0949 REMARK 3 S21: -0.3289 S22: -0.1448 S23: 0.1585 REMARK 3 S31: 0.4079 S32: 0.2035 S33: -0.0588 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3513 43.0377 39.7568 REMARK 3 T TENSOR REMARK 3 T11: 0.2071 T22: 0.2527 REMARK 3 T33: 0.1682 T12: -0.0130 REMARK 3 T13: -0.0049 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.7582 L22: 2.0293 REMARK 3 L33: 2.5324 L12: 0.1771 REMARK 3 L13: -0.2909 L23: -0.2875 REMARK 3 S TENSOR REMARK 3 S11: 0.1841 S12: 0.1333 S13: 0.2316 REMARK 3 S21: -0.2019 S22: -0.0050 S23: 0.2848 REMARK 3 S31: 0.1227 S32: -0.2547 S33: -0.1565 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3207 26.0465 46.5864 REMARK 3 T TENSOR REMARK 3 T11: 0.4635 T22: 0.2979 REMARK 3 T33: 0.2569 T12: -0.1696 REMARK 3 T13: -0.0686 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 3.1808 L22: 2.5669 REMARK 3 L33: 8.2641 L12: 0.3060 REMARK 3 L13: 1.9463 L23: 4.3333 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.2877 S13: -0.3217 REMARK 3 S21: -0.0612 S22: -0.0775 S23: 0.4286 REMARK 3 S31: 0.7310 S32: -0.6931 S33: 0.0233 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0712 38.7993 50.4829 REMARK 3 T TENSOR REMARK 3 T11: 0.2391 T22: 0.3090 REMARK 3 T33: 0.1463 T12: -0.0027 REMARK 3 T13: 0.0012 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.9624 L22: 2.5923 REMARK 3 L33: 0.8359 L12: -0.0393 REMARK 3 L13: -0.8357 L23: -0.1724 REMARK 3 S TENSOR REMARK 3 S11: 0.1467 S12: -0.2068 S13: 0.0947 REMARK 3 S21: 0.2082 S22: 0.0205 S23: 0.0874 REMARK 3 S31: 0.2708 S32: -0.1584 S33: -0.1727 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7444 64.2267 57.8166 REMARK 3 T TENSOR REMARK 3 T11: 0.4233 T22: 0.4098 REMARK 3 T33: 0.5847 T12: -0.1067 REMARK 3 T13: 0.1080 T23: -0.1912 REMARK 3 L TENSOR REMARK 3 L11: 1.8928 L22: 5.7990 REMARK 3 L33: 3.1498 L12: 0.7804 REMARK 3 L13: 1.6708 L23: -0.5009 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.3616 S13: 0.8795 REMARK 3 S21: 0.0083 S22: -0.0690 S23: -0.2050 REMARK 3 S31: -0.8723 S32: 0.2936 S33: 0.0613 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.4329 47.7614 51.1991 REMARK 3 T TENSOR REMARK 3 T11: 0.2043 T22: 0.3676 REMARK 3 T33: 0.2717 T12: -0.0201 REMARK 3 T13: 0.0487 T23: -0.0749 REMARK 3 L TENSOR REMARK 3 L11: 1.5594 L22: 1.9013 REMARK 3 L33: 2.4233 L12: -0.0261 REMARK 3 L13: -0.2452 L23: 0.2664 REMARK 3 S TENSOR REMARK 3 S11: 0.1006 S12: -0.2729 S13: 0.3790 REMARK 3 S21: 0.0510 S22: 0.1142 S23: -0.3510 REMARK 3 S31: -0.0818 S32: 0.6123 S33: -0.1853 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 384 THROUGH 417 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.7850 35.9694 28.0017 REMARK 3 T TENSOR REMARK 3 T11: 0.4637 T22: 0.3549 REMARK 3 T33: 0.0798 T12: 0.0709 REMARK 3 T13: 0.0569 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.2750 L22: 2.1050 REMARK 3 L33: 1.9572 L12: 0.4545 REMARK 3 L13: 0.0348 L23: -1.1150 REMARK 3 S TENSOR REMARK 3 S11: 0.1454 S12: 0.1117 S13: 0.0759 REMARK 3 S21: -0.2527 S22: -0.0313 S23: 0.2792 REMARK 3 S31: 0.3320 S32: -0.0448 S33: -0.1578 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224035. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65605 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM IODIDE, PEG 3350, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.96433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.92867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.92867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.96433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 12 REMARK 465 ARG A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 LYS A 20 REMARK 465 LEU A 21 REMARK 465 ALA A 22 REMARK 465 PRO A 23 REMARK 465 VAL A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 GLN A 27 REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 ALA A 418 REMARK 465 LEU A 419 REMARK 465 PRO A 420 REMARK 465 PRO A 421 REMARK 465 ASP A 422 REMARK 465 GLY A 423 REMARK 465 ARG A 424 REMARK 465 PRO A 425 REMARK 465 THR A 426 REMARK 465 LEU A 427 REMARK 465 LEU A 428 REMARK 465 PRO A 429 REMARK 465 LYS A 430 REMARK 465 GLY A 431 REMARK 465 ARG A 432 REMARK 465 SER A 433 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 75 O3 PC A 552 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 108 -179.57 -64.33 REMARK 500 ALA A 163 40.73 -108.59 REMARK 500 LEU A 278 -169.32 -124.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 39 OD1 REMARK 620 2 THR A 75 OG1 131.2 REMARK 620 3 ASP A 246 OD2 94.7 109.1 REMARK 620 4 HIS A 247 NE2 107.5 111.1 96.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 514 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 O REMARK 620 2 VAL A 49 O 83.3 REMARK 620 3 THR A 51 OG1 100.2 96.8 REMARK 620 4 HOH A 614 O 172.6 94.3 73.0 REMARK 620 5 HOH A 765 O 85.7 166.3 93.3 97.6 REMARK 620 6 HOH A 775 O 90.2 92.3 166.9 96.9 79.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 199 OD1 REMARK 620 2 ASP A 199 OD2 52.6 REMARK 620 3 HIS A 203 NE2 87.1 90.8 REMARK 620 4 HIS A 353 NE2 83.6 136.0 91.5 REMARK 620 5 PC A 552 O1 152.1 99.7 98.0 123.4 REMARK 620 N 1 2 3 4 DBREF 5TCD A 22 433 UNP Q6UWV6 ENPP7_HUMAN 22 433 SEQADV 5TCD ASP A 12 UNP Q6UWV6 EXPRESSION TAG SEQADV 5TCD ARG A 13 UNP Q6UWV6 EXPRESSION TAG SEQADV 5TCD HIS A 14 UNP Q6UWV6 EXPRESSION TAG SEQADV 5TCD HIS A 15 UNP Q6UWV6 EXPRESSION TAG SEQADV 5TCD HIS A 16 UNP Q6UWV6 EXPRESSION TAG SEQADV 5TCD HIS A 17 UNP Q6UWV6 EXPRESSION TAG SEQADV 5TCD HIS A 18 UNP Q6UWV6 EXPRESSION TAG SEQADV 5TCD HIS A 19 UNP Q6UWV6 EXPRESSION TAG SEQADV 5TCD LYS A 20 UNP Q6UWV6 EXPRESSION TAG SEQADV 5TCD LEU A 21 UNP Q6UWV6 EXPRESSION TAG SEQRES 1 A 422 ASP ARG HIS HIS HIS HIS HIS HIS LYS LEU ALA PRO VAL SEQRES 2 A 422 GLN SER GLN GLY SER GLN ASN LYS LEU LEU LEU VAL SER SEQRES 3 A 422 PHE ASP GLY PHE ARG TRP ASN TYR ASP GLN ASP VAL ASP SEQRES 4 A 422 THR PRO ASN LEU ASP ALA MET ALA ARG ASP GLY VAL LYS SEQRES 5 A 422 ALA ARG TYR MET THR PRO ALA PHE VAL THR MET THR SER SEQRES 6 A 422 PRO CYS HIS PHE THR LEU VAL THR GLY LYS TYR ILE GLU SEQRES 7 A 422 ASN HIS GLY VAL VAL HIS ASN MET TYR TYR ASN THR THR SEQRES 8 A 422 SER LYS VAL LYS LEU PRO TYR HIS ALA THR LEU GLY ILE SEQRES 9 A 422 GLN ARG TRP TRP ASP ASN GLY SER VAL PRO ILE TRP ILE SEQRES 10 A 422 THR ALA GLN ARG GLN GLY LEU ARG ALA GLY SER PHE PHE SEQRES 11 A 422 TYR PRO GLY GLY ASN VAL THR TYR GLN GLY VAL ALA VAL SEQRES 12 A 422 THR ARG SER ARG LYS GLU GLY ILE ALA HIS ASN TYR LYS SEQRES 13 A 422 ASN GLU THR GLU TRP ARG ALA ASN ILE ASP THR VAL MET SEQRES 14 A 422 ALA TRP PHE THR GLU GLU ASP LEU ASP LEU VAL THR LEU SEQRES 15 A 422 TYR PHE GLY GLU PRO ASP SER THR GLY HIS ARG TYR GLY SEQRES 16 A 422 PRO GLU SER PRO GLU ARG ARG GLU MET VAL ARG GLN VAL SEQRES 17 A 422 ASP ARG THR VAL GLY TYR LEU ARG GLU SER ILE ALA ARG SEQRES 18 A 422 ASN HIS LEU THR ASP ARG LEU ASN LEU ILE ILE THR SER SEQRES 19 A 422 ASP HIS GLY MET THR THR VAL ASP LYS ARG ALA GLY ASP SEQRES 20 A 422 LEU VAL GLU PHE HIS LYS PHE PRO ASN PHE THR PHE ARG SEQRES 21 A 422 ASP ILE GLU PHE GLU LEU LEU ASP TYR GLY PRO ASN GLY SEQRES 22 A 422 MET LEU LEU PRO LYS GLU GLY ARG LEU GLU LYS VAL TYR SEQRES 23 A 422 ASP ALA LEU LYS ASP ALA HIS PRO LYS LEU HIS VAL TYR SEQRES 24 A 422 LYS LYS GLU ALA PHE PRO GLU ALA PHE HIS TYR ALA ASN SEQRES 25 A 422 ASN PRO ARG VAL THR PRO LEU LEU MET TYR SER ASP LEU SEQRES 26 A 422 GLY TYR VAL ILE HIS GLY ARG ILE ASN VAL GLN PHE ASN SEQRES 27 A 422 ASN GLY GLU HIS GLY PHE ASP ASN LYS ASP MET ASP MET SEQRES 28 A 422 LYS THR ILE PHE ARG ALA VAL GLY PRO SER PHE ARG ALA SEQRES 29 A 422 GLY LEU GLU VAL GLU PRO PHE GLU SER VAL HIS VAL TYR SEQRES 30 A 422 GLU LEU MET CYS ARG LEU LEU GLY ILE VAL PRO GLU ALA SEQRES 31 A 422 ASN ASP GLY HIS LEU ALA THR LEU LEU PRO MET LEU HIS SEQRES 32 A 422 THR GLU SER ALA LEU PRO PRO ASP GLY ARG PRO THR LEU SEQRES 33 A 422 LEU PRO LYS GLY ARG SER HET NAG B 1 27 HET NAG B 2 28 HET NAG C 1 27 HET NAG C 2 28 HET NAG D 1 27 HET NAG D 2 27 HET BMA D 3 21 HET NAG E 1 26 HET NAG E 2 28 HET FUC E 3 21 HET ZN A 501 1 HET ZN A 502 1 HET NAG A 513 28 HET NA A 514 1 HET IOD A 515 1 HET IOD A 516 1 HET IOD A 517 1 HET IOD A 518 1 HET IOD A 519 1 HET IOD A 520 1 HET IOD A 521 1 HET IOD A 522 1 HET IOD A 523 1 HET IOD A 524 1 HET IOD A 525 1 HET IOD A 526 1 HET IOD A 527 1 HET IOD A 528 1 HET IOD A 529 1 HET IOD A 530 1 HET IOD A 531 1 HET IOD A 532 1 HET IOD A 533 1 HET IOD A 534 1 HET IOD A 535 1 HET IOD A 536 1 HET IOD A 537 1 HET IOD A 538 1 HET IOD A 539 1 HET IOD A 540 1 HET IOD A 541 1 HET IOD A 542 1 HET IOD A 543 1 HET IOD A 544 1 HET IOD A 545 1 HET IOD A 546 1 HET IOD A 547 1 HET IOD A 548 1 HET IOD A 549 1 HET IOD A 550 1 HET IOD A 551 1 HET PC A 552 24 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM IOD IODIDE ION HETNAM PC PHOSPHOCHOLINE FORMUL 2 NAG 9(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 5 FUC C6 H12 O5 FORMUL 6 ZN 2(ZN 2+) FORMUL 9 NA NA 1+ FORMUL 10 IOD 37(I 1-) FORMUL 47 PC C5 H15 N O4 P 1+ FORMUL 48 HOH *205(H2 O) HELIX 1 AA1 THR A 51 GLY A 61 1 11 HELIX 2 AA2 MET A 74 GLY A 85 1 12 HELIX 3 AA3 TYR A 87 GLY A 92 1 6 HELIX 4 AA4 PRO A 108 LEU A 113 1 6 HELIX 5 AA5 ILE A 115 ASP A 120 1 6 HELIX 6 AA6 PRO A 125 ARG A 132 1 8 HELIX 7 AA7 ASN A 168 GLU A 186 1 19 HELIX 8 AA8 PRO A 198 GLY A 206 1 9 HELIX 9 AA9 SER A 209 ASN A 233 1 25 HELIX 10 AB1 HIS A 263 PHE A 265 5 3 HELIX 11 AB2 THR A 269 ARG A 271 5 3 HELIX 12 AB3 ARG A 292 LYS A 301 1 10 HELIX 13 AB4 GLU A 313 PHE A 315 5 3 HELIX 14 AB5 PRO A 316 HIS A 320 5 5 HELIX 15 AB6 ASP A 359 LYS A 363 5 5 HELIX 16 AB7 HIS A 386 GLY A 396 1 11 HELIX 17 AB8 HIS A 405 LEU A 413 5 9 SHEET 1 AA1 8 ARG A 156 ARG A 158 0 SHEET 2 AA1 8 ALA A 137 PHE A 140 1 N SER A 139 O ARG A 156 SHEET 3 AA1 8 LEU A 190 PHE A 195 1 O THR A 192 N PHE A 140 SHEET 4 AA1 8 LYS A 32 PHE A 38 1 N LEU A 35 O LEU A 193 SHEET 5 AA1 8 LEU A 239 THR A 244 1 O ASN A 240 N LYS A 32 SHEET 6 AA1 8 PHE A 366 VAL A 369 -1 O ARG A 367 N ILE A 243 SHEET 7 AA1 8 VAL A 62 ALA A 64 -1 N VAL A 62 O ALA A 368 SHEET 8 AA1 8 LEU A 377 VAL A 379 1 O VAL A 379 N LYS A 63 SHEET 1 AA2 2 MET A 67 THR A 68 0 SHEET 2 AA2 2 PHE A 382 GLU A 383 1 O PHE A 382 N THR A 68 SHEET 1 AA3 2 TYR A 98 ASN A 100 0 SHEET 2 AA3 2 VAL A 105 LEU A 107 -1 O LEU A 107 N TYR A 98 SHEET 1 AA4 2 THR A 250 THR A 251 0 SHEET 2 AA4 2 GLY A 351 GLU A 352 -1 O GLU A 352 N THR A 250 SHEET 1 AA5 2 VAL A 260 GLU A 261 0 SHEET 2 AA5 2 ILE A 340 HIS A 341 1 O HIS A 341 N VAL A 260 SHEET 1 AA6 4 ILE A 273 LEU A 277 0 SHEET 2 AA6 4 ASN A 283 PRO A 288 -1 O LEU A 287 N PHE A 275 SHEET 3 AA6 4 LEU A 330 SER A 334 -1 O LEU A 330 N LEU A 286 SHEET 4 AA6 4 LEU A 307 LYS A 311 -1 N HIS A 308 O TYR A 333 LINK ND2 ASN A 100 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 121 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 146 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 168 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN A 267 C1 NAG A 513 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.43 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.45 LINK OD1 ASP A 39 ZN ZN A 501 1555 1555 1.88 LINK O ASP A 46 NA NA A 514 1555 1555 2.26 LINK O VAL A 49 NA NA A 514 1555 1555 2.35 LINK OG1 THR A 51 NA NA A 514 1555 1555 2.71 LINK OG1 THR A 75 ZN ZN A 501 1555 1555 2.15 LINK OD1 ASP A 199 ZN ZN A 502 1555 1555 2.60 LINK OD2 ASP A 199 ZN ZN A 502 1555 1555 2.32 LINK NE2 HIS A 203 ZN ZN A 502 1555 1555 2.10 LINK OD2 ASP A 246 ZN ZN A 501 1555 1555 2.09 LINK NE2 HIS A 247 ZN ZN A 501 1555 1555 2.11 LINK NE2 HIS A 353 ZN ZN A 502 1555 1555 2.06 LINK ZN ZN A 502 O1 PC A 552 1555 1555 2.03 LINK NA NA A 514 O HOH A 614 1555 1555 2.38 LINK NA NA A 514 O HOH A 765 1555 1555 2.67 LINK NA NA A 514 O HOH A 775 1555 1555 2.44 CISPEP 1 PHE A 71 VAL A 72 0 0.56 CISPEP 2 GLU A 197 PRO A 198 0 4.67 CRYST1 104.223 104.223 113.893 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009595 0.005540 0.000000 0.00000 SCALE2 0.000000 0.011079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008780 0.00000