HEADER UNKNOWN FUNCTION 15-SEP-16 5TCM TITLE FIRST BROMODOMAIN FROM LEISHMANIA DONOVANI LDBPK.091320 COMPLEXED WITH TITLE 2 BI-2536 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: BROMODOMAIN, UNP RESIDUES 8-119; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA DONOVANI (STRAIN BPK282A1); SOURCE 3 ORGANISM_TAXID: 981087; SOURCE 4 STRAIN: BPK282A1; SOURCE 5 GENE: LDBPK_091320; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15-MHL KEYWDS BROMODOMAIN, INHIBITOR, STRUCTURAL GENOMICS CONSORTIUM (SGC), UNKNOWN KEYWDS 2 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.LIN,C.F.D.HOU,P.LOPPNAU,A.DONG,C.BOUNTRA,A.M.EDWARDS, AUTHOR 2 C.H.ARROWSMITH,R.HUI,J.R.WALKER,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 04-OCT-23 5TCM 1 COMPND HETNAM REVDAT 3 18-APR-18 5TCM 1 COMPND REMARK HETNAM REVDAT 2 24-JAN-18 5TCM 1 AUTHOR JRNL REMARK REVDAT 1 05-OCT-16 5TCM 0 JRNL AUTH Y.H.LIN,C.F.D.HOU,P.LOPPNAU,A.DONG,C.BOUNTRA,A.M.EDWARDS, JRNL AUTH 2 C.H.ARROWSMITH,R.HUI,J.R.WALKER, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL FIRST BROMODOMAIN FROM LEISHMANIA DONOVANI LDBPK.091320 JRNL TITL 2 COMPLEXED WITH BI-2536 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 24471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1246 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.30 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.54 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2968 REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2835 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.48 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.88840 REMARK 3 B22 (A**2) : 9.54170 REMARK 3 B33 (A**2) : -4.65340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.59780 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.250 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.203 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.169 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.554 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.169 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5574 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10000 ; 3.800 ; HARMONIC REMARK 3 TORSION ANGLES : 1254 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 67 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 920 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5574 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 368 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6113 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.67 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.72 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.47 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 16.0291 48.7205 9.8726 REMARK 3 T TENSOR REMARK 3 T11: -0.0288 T22: -0.1040 REMARK 3 T33: -0.0799 T12: 0.0434 REMARK 3 T13: -0.0655 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.2003 L22: 1.9776 REMARK 3 L33: 2.1508 L12: 0.9792 REMARK 3 L13: -0.9959 L23: -1.2062 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: 0.0396 S13: 0.0393 REMARK 3 S21: 0.0181 S22: -0.0016 S23: 0.1703 REMARK 3 S31: -0.0591 S32: -0.1106 S33: -0.0886 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 31.3324 41.7187 29.1219 REMARK 3 T TENSOR REMARK 3 T11: 0.0002 T22: -0.0877 REMARK 3 T33: -0.0973 T12: -0.0028 REMARK 3 T13: -0.0375 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.7136 L22: 0.9275 REMARK 3 L33: 0.6475 L12: -0.4997 REMARK 3 L13: -0.0878 L23: 0.2176 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0190 S13: -0.0803 REMARK 3 S21: 0.0466 S22: -0.0145 S23: 0.0521 REMARK 3 S31: -0.0107 S32: -0.0428 S33: 0.0207 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.8340 23.7668 15.0749 REMARK 3 T TENSOR REMARK 3 T11: -0.0120 T22: -0.1236 REMARK 3 T33: -0.0585 T12: -0.0276 REMARK 3 T13: -0.0554 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.9722 L22: 1.8086 REMARK 3 L33: 2.5188 L12: -0.2970 REMARK 3 L13: -0.3311 L23: 1.1443 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: -0.0073 S13: -0.0310 REMARK 3 S21: -0.0240 S22: 0.0091 S23: 0.0192 REMARK 3 S31: -0.0324 S32: -0.0560 S33: -0.0844 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97880 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24639 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5TCK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS CRYSTALLIZED AT 293 K REMARK 280 WITH 2M NAFORMATE, 0.1M BTP 7.0 AND 1.0 M CESIUM CHLORIDE WITH REMARK 280 BI2536 USING THE SITTING DROP METHOD., PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.66600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.62500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.66600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.62500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 SER A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 ARG A -3 REMARK 465 GLU A -2 REMARK 465 ASN A -1 REMARK 465 LEU A 0 REMARK 465 MET B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 SER B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 ARG B -3 REMARK 465 GLU B -2 REMARK 465 ASN B -1 REMARK 465 LEU B 0 REMARK 465 TYR B 1 REMARK 465 MET C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 HIS C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 SER C -6 REMARK 465 SER C -5 REMARK 465 GLY C -4 REMARK 465 ARG C -3 REMARK 465 GLU C -2 REMARK 465 ASN C -1 REMARK 465 LEU C 0 REMARK 465 TYR C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 1 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LEU A 67 CD1 CD2 REMARK 470 LYS A 99 NZ REMARK 470 ARG A 102 CD NE CZ NH1 NH2 REMARK 470 LEU A 113 CG CD1 CD2 REMARK 470 GLU A 114 OE1 OE2 REMARK 470 ASN A 116 CG OD1 ND2 REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 GLU B 39 CD OE1 OE2 REMARK 470 LYS B 43 CD CE NZ REMARK 470 GLU B 114 CD OE1 OE2 REMARK 470 GLN C 3 CG CD OE1 NE2 REMARK 470 GLU C 39 CD OE1 OE2 REMARK 470 LYS C 43 CD CE NZ REMARK 470 LEU C 67 CG CD1 CD2 REMARK 470 ARG C 102 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 115 38.13 -90.22 REMARK 500 HIS B 115 49.08 -95.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R78 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R78 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R78 C 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TCK RELATED DB: PDB REMARK 900 5TCK CONTAINS THE SECOND BROMODOMAIN OF THIS PROTEIN. DBREF 5TCM A 5 116 UNP E9BA17 E9BA17_LEIDB 8 119 DBREF 5TCM B 5 116 UNP E9BA17 E9BA17_LEIDB 8 119 DBREF 5TCM C 5 116 UNP E9BA17 E9BA17_LEIDB 8 119 SEQADV 5TCM MET A -13 UNP E9BA17 INITIATING METHIONINE SEQADV 5TCM HIS A -12 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS A -11 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS A -10 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS A -9 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS A -8 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS A -7 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM SER A -6 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM SER A -5 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM GLY A -4 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM ARG A -3 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM GLU A -2 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM ASN A -1 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM LEU A 0 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM TYR A 1 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM PHE A 2 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM GLN A 3 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM GLY A 4 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM MET B -13 UNP E9BA17 INITIATING METHIONINE SEQADV 5TCM HIS B -12 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS B -11 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS B -10 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS B -9 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS B -8 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS B -7 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM SER B -6 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM SER B -5 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM GLY B -4 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM ARG B -3 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM GLU B -2 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM ASN B -1 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM LEU B 0 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM TYR B 1 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM PHE B 2 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM GLN B 3 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM GLY B 4 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM MET C -13 UNP E9BA17 INITIATING METHIONINE SEQADV 5TCM HIS C -12 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS C -11 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS C -10 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS C -9 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS C -8 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM HIS C -7 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM SER C -6 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM SER C -5 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM GLY C -4 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM ARG C -3 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM GLU C -2 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM ASN C -1 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM LEU C 0 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM TYR C 1 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM PHE C 2 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM GLN C 3 UNP E9BA17 EXPRESSION TAG SEQADV 5TCM GLY C 4 UNP E9BA17 EXPRESSION TAG SEQRES 1 A 130 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 130 LEU TYR PHE GLN GLY TYR ASN GLU ALA ASP VAL ALA ALA SEQRES 3 A 130 LEU VAL ARG SER LEU ASP ARG ALA GLU ASP HIS HIS ILE SEQRES 4 A 130 PHE ALA VAL ASP VAL LEU GLU THR TYR PRO TYR LEU ALA SEQRES 5 A 130 GLU SER TYR THR LYS VAL CYS PRO ARG ARG CYS ASP LEU SEQRES 6 A 130 ALA THR ALA ALA GLN LYS ALA LEU GLU GLY ALA TYR SER SEQRES 7 A 130 TYR ASP LEU ARG LEU GLU GLY LEU LYS ALA ASP ILE ALA SEQRES 8 A 130 LEU MET ALA SER ASN CYS VAL ALA TYR ASN GLY PRO THR SEQRES 9 A 130 SER ALA TYR ALA GLU THR ALA ALA LYS PHE GLU ARG TYR SEQRES 10 A 130 ALA LEU GLU GLN ILE ASP ALA PHE VAL LEU GLU HIS ASN SEQRES 1 B 130 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 130 LEU TYR PHE GLN GLY TYR ASN GLU ALA ASP VAL ALA ALA SEQRES 3 B 130 LEU VAL ARG SER LEU ASP ARG ALA GLU ASP HIS HIS ILE SEQRES 4 B 130 PHE ALA VAL ASP VAL LEU GLU THR TYR PRO TYR LEU ALA SEQRES 5 B 130 GLU SER TYR THR LYS VAL CYS PRO ARG ARG CYS ASP LEU SEQRES 6 B 130 ALA THR ALA ALA GLN LYS ALA LEU GLU GLY ALA TYR SER SEQRES 7 B 130 TYR ASP LEU ARG LEU GLU GLY LEU LYS ALA ASP ILE ALA SEQRES 8 B 130 LEU MET ALA SER ASN CYS VAL ALA TYR ASN GLY PRO THR SEQRES 9 B 130 SER ALA TYR ALA GLU THR ALA ALA LYS PHE GLU ARG TYR SEQRES 10 B 130 ALA LEU GLU GLN ILE ASP ALA PHE VAL LEU GLU HIS ASN SEQRES 1 C 130 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 C 130 LEU TYR PHE GLN GLY TYR ASN GLU ALA ASP VAL ALA ALA SEQRES 3 C 130 LEU VAL ARG SER LEU ASP ARG ALA GLU ASP HIS HIS ILE SEQRES 4 C 130 PHE ALA VAL ASP VAL LEU GLU THR TYR PRO TYR LEU ALA SEQRES 5 C 130 GLU SER TYR THR LYS VAL CYS PRO ARG ARG CYS ASP LEU SEQRES 6 C 130 ALA THR ALA ALA GLN LYS ALA LEU GLU GLY ALA TYR SER SEQRES 7 C 130 TYR ASP LEU ARG LEU GLU GLY LEU LYS ALA ASP ILE ALA SEQRES 8 C 130 LEU MET ALA SER ASN CYS VAL ALA TYR ASN GLY PRO THR SEQRES 9 C 130 SER ALA TYR ALA GLU THR ALA ALA LYS PHE GLU ARG TYR SEQRES 10 C 130 ALA LEU GLU GLN ILE ASP ALA PHE VAL LEU GLU HIS ASN HET R78 A 201 38 HET EDO A 202 4 HET R78 B 201 38 HET EDO B 202 4 HET EDO B 203 4 HET R78 C 200 38 HETNAM R78 4-{[(7R)-8-CYCLOPENTYL-7-ETHYL-5-METHYL-6-OXO-5,6,7,8- HETNAM 2 R78 TETRAHYDROPTERIDIN-2-YL]AMINO}-3-METHOXY-N-(1- HETNAM 3 R78 METHYLPIPERIDIN-4-YL)BENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 R78 3(C28 H39 N7 O3) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 10 HOH *214(H2 O) HELIX 1 AA1 ASN A 6 SER A 16 1 11 HELIX 2 AA2 LEU A 17 ASP A 18 5 2 HELIX 3 AA3 ARG A 19 HIS A 23 5 5 HELIX 4 AA4 ASP A 29 TYR A 34 1 6 HELIX 5 AA5 LEU A 37 CYS A 45 1 9 HELIX 6 AA6 ASP A 50 GLU A 60 1 11 HELIX 7 AA7 LEU A 69 GLY A 88 1 20 HELIX 8 AA8 SER A 91 HIS A 115 1 25 HELIX 9 AA9 ASN B 6 LEU B 17 1 12 HELIX 10 AB1 ASP B 18 HIS B 23 5 6 HELIX 11 AB2 ASP B 29 TYR B 34 1 6 HELIX 12 AB3 LEU B 37 CYS B 45 1 9 HELIX 13 AB4 ASP B 50 GLY B 61 1 12 HELIX 14 AB5 LEU B 69 GLY B 88 1 20 HELIX 15 AB6 SER B 91 HIS B 115 1 25 HELIX 16 AB7 ASN C 6 LEU C 17 1 12 HELIX 17 AB8 ASP C 18 HIS C 23 5 6 HELIX 18 AB9 ASP C 29 TYR C 34 1 6 HELIX 19 AC1 LEU C 37 CYS C 45 1 9 HELIX 20 AC2 ASP C 50 GLU C 60 1 11 HELIX 21 AC3 LEU C 69 GLY C 88 1 20 HELIX 22 AC4 SER C 91 HIS C 115 1 25 SITE 1 AC1 13 HIS A 23 HIS A 24 ILE A 25 VAL A 30 SITE 2 AC1 13 TYR A 86 ASN A 87 TYR A 93 HOH A 302 SITE 3 AC1 13 HOH A 309 HOH A 341 THR C 33 TYR C 34 SITE 4 AC1 13 R78 C 200 SITE 1 AC2 9 LEU A 17 ASP A 18 ARG A 19 ASP A 22 SITE 2 AC2 9 HIS A 24 ILE A 25 PHE A 26 ALA A 27 SITE 3 AC2 9 PHE A 100 SITE 1 AC3 10 HIS B 23 HIS B 24 ILE B 25 VAL B 30 SITE 2 AC3 10 TYR B 34 TYR B 86 ASN B 87 TYR B 93 SITE 3 AC3 10 HOH B 304 HOH B 305 SITE 1 AC4 3 TYR B 36 ALA B 38 GLU B 39 SITE 1 AC5 5 LYS B 99 ARG B 102 TYR B 103 GLU B 106 SITE 2 AC5 5 HOH B 370 SITE 1 AC6 12 TYR A 34 R78 A 201 HIS C 24 ILE C 25 SITE 2 AC6 12 VAL C 30 THR C 33 TYR C 86 ASN C 87 SITE 3 AC6 12 TYR C 93 HOH C 304 HOH C 309 HOH C 315 CRYST1 101.332 85.250 57.277 90.00 94.46 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009869 0.000000 0.000770 0.00000 SCALE2 0.000000 0.011730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017512 0.00000