HEADER LYASE 19-SEP-16 5TD9 TITLE STRUCTURE OF HUMAN ENOLASE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-ENOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE, ENOLASE 2, NEURAL COMPND 5 ENOLASE, NEURON-SPECIFIC ENOLASE, NSE; COMPND 6 EC: 4.2.1.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ENO2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJL-H6 KEYWDS ENOLASE GAMMA, GLYCOLYSIS, NEURON SPECIFIC ENOLASE, CARBOHYDRATE KEYWDS 2 METABOLISM, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR P.G.LEONARD,F.L.MULLER REVDAT 2 04-OCT-23 5TD9 1 REMARK LINK REVDAT 1 27-SEP-17 5TD9 0 JRNL AUTH Y.H.LIN,N.SATANI,N.HAMMOUDI,F.FELINI,P.G.LEONARD,D.MAXWELL, JRNL AUTH 2 Z.PENG,T.M.LINK,G.R.LEE,A.BOSAJOU,D.SUN,J.R.MARSZALEK, JRNL AUTH 3 Y.T.SUN,J.MCMURRAY,P.J.MANDAL,R.ZIELINSKI,W.PRIEBE, JRNL AUTH 4 M.E.DIFRANCESCO,B.CZAKO,Y.A.WANG,W.BORNMANN,R.A.DEPINHO, JRNL AUTH 5 F.L.MULLER JRNL TITL POMHEX, A CELL-PERMEABLE ENOLASE INHIBITOR FOR COLLATERAL JRNL TITL 2 LETHALITY TARGETING OF ENO1-DELETED GLIOBLASTOMA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1-2155-000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5172 - 5.5837 1.00 2975 156 0.1658 0.1994 REMARK 3 2 5.5837 - 4.4334 1.00 2837 148 0.1577 0.2123 REMARK 3 3 4.4334 - 3.8734 1.00 2809 144 0.1661 0.2035 REMARK 3 4 3.8734 - 3.5194 1.00 2800 143 0.1874 0.2385 REMARK 3 5 3.5194 - 3.2672 1.00 2776 152 0.2092 0.2583 REMARK 3 6 3.2672 - 3.0746 1.00 2751 134 0.2201 0.2598 REMARK 3 7 3.0746 - 2.9207 1.00 2793 134 0.2350 0.2580 REMARK 3 8 2.9207 - 2.7936 1.00 2745 147 0.2421 0.2994 REMARK 3 9 2.7936 - 2.6861 1.00 2745 148 0.2470 0.3027 REMARK 3 10 2.6861 - 2.5934 1.00 2746 141 0.2431 0.3011 REMARK 3 11 2.5934 - 2.5123 1.00 2734 143 0.2419 0.2694 REMARK 3 12 2.5123 - 2.4405 1.00 2743 137 0.2405 0.3015 REMARK 3 13 2.4405 - 2.3762 1.00 2741 143 0.2491 0.3019 REMARK 3 14 2.3762 - 2.3183 0.96 2602 145 0.2561 0.2970 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6766 REMARK 3 ANGLE : 0.636 9136 REMARK 3 CHIRALITY : 0.042 1026 REMARK 3 PLANARITY : 0.004 1204 REMARK 3 DIHEDRAL : 18.286 4080 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.5612 29.1241 -86.2478 REMARK 3 T TENSOR REMARK 3 T11: 0.2638 T22: 0.7842 REMARK 3 T33: 0.2186 T12: -0.0042 REMARK 3 T13: 0.0047 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 2.4116 L22: 2.0362 REMARK 3 L33: 3.3647 L12: 0.4061 REMARK 3 L13: -0.5139 L23: -0.0920 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.5613 S13: -0.0393 REMARK 3 S21: 0.1586 S22: 0.0243 S23: -0.2970 REMARK 3 S31: -0.1305 S32: 0.2224 S33: -0.0756 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.1362 24.8401 -78.0537 REMARK 3 T TENSOR REMARK 3 T11: 0.3114 T22: 0.9902 REMARK 3 T33: 0.2899 T12: 0.0436 REMARK 3 T13: -0.0368 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 1.7093 L22: 2.0654 REMARK 3 L33: 2.7273 L12: 0.5281 REMARK 3 L13: 0.3153 L23: 0.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.0378 S12: -0.7306 S13: -0.3122 REMARK 3 S21: 0.3681 S22: 0.0405 S23: -0.4260 REMARK 3 S31: 0.0385 S32: 0.6456 S33: -0.1281 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.8888 35.0297 -91.0473 REMARK 3 T TENSOR REMARK 3 T11: 0.2498 T22: 0.8898 REMARK 3 T33: 0.3380 T12: -0.0738 REMARK 3 T13: 0.0034 T23: -0.0666 REMARK 3 L TENSOR REMARK 3 L11: 1.6265 L22: 1.1734 REMARK 3 L33: 1.4294 L12: -0.9542 REMARK 3 L13: -1.0310 L23: 0.0710 REMARK 3 S TENSOR REMARK 3 S11: 0.1807 S12: -0.7512 S13: 0.2603 REMARK 3 S21: 0.1223 S22: -0.0114 S23: -0.3896 REMARK 3 S31: -0.2851 S32: 0.4418 S33: -0.1305 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.5989 12.4188-107.2010 REMARK 3 T TENSOR REMARK 3 T11: 0.3695 T22: 0.4827 REMARK 3 T33: 0.4904 T12: -0.0322 REMARK 3 T13: 0.1273 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 4.7344 L22: 5.6517 REMARK 3 L33: 5.5457 L12: 1.3026 REMARK 3 L13: -1.6041 L23: -2.7809 REMARK 3 S TENSOR REMARK 3 S11: -0.3005 S12: 0.2601 S13: -1.0238 REMARK 3 S21: -0.1382 S22: 0.1571 S23: -0.1153 REMARK 3 S31: 0.8713 S32: -0.1008 S33: 0.1173 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.0827 12.6951-113.8075 REMARK 3 T TENSOR REMARK 3 T11: 0.3413 T22: 0.9234 REMARK 3 T33: 0.4576 T12: 0.0505 REMARK 3 T13: 0.1035 T23: -0.1016 REMARK 3 L TENSOR REMARK 3 L11: 4.6035 L22: 3.1027 REMARK 3 L33: 2.7394 L12: 0.7225 REMARK 3 L13: -1.3021 L23: -0.3376 REMARK 3 S TENSOR REMARK 3 S11: -0.2412 S12: 0.6821 S13: -0.9214 REMARK 3 S21: -0.2979 S22: -0.0528 S23: -0.1506 REMARK 3 S31: 0.7047 S32: 0.0311 S33: 0.3829 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 102.3690 -0.6969-100.3131 REMARK 3 T TENSOR REMARK 3 T11: 0.7289 T22: 0.8457 REMARK 3 T33: 1.3124 T12: 0.2314 REMARK 3 T13: 0.1284 T23: 0.2218 REMARK 3 L TENSOR REMARK 3 L11: 4.4675 L22: 2.9091 REMARK 3 L33: 4.9511 L12: -0.4734 REMARK 3 L13: 1.7878 L23: -0.3054 REMARK 3 S TENSOR REMARK 3 S11: 0.2180 S12: -0.1716 S13: -1.9591 REMARK 3 S21: 0.3002 S22: -0.0851 S23: -0.2823 REMARK 3 S31: 1.1727 S32: -0.1139 S33: 0.1529 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.9132 22.8326 -96.2968 REMARK 3 T TENSOR REMARK 3 T11: 0.2450 T22: 0.9033 REMARK 3 T33: 0.3581 T12: 0.0782 REMARK 3 T13: 0.0056 T23: 0.1444 REMARK 3 L TENSOR REMARK 3 L11: 2.9634 L22: 0.7962 REMARK 3 L33: 0.9289 L12: -0.3456 REMARK 3 L13: -0.1087 L23: 0.7105 REMARK 3 S TENSOR REMARK 3 S11: -0.0906 S12: -0.5462 S13: -0.2735 REMARK 3 S21: 0.1421 S22: -0.0464 S23: -0.2942 REMARK 3 S31: 0.1867 S32: 0.7399 S33: 0.1184 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.3239 33.4857-109.5155 REMARK 3 T TENSOR REMARK 3 T11: 0.2442 T22: 0.6503 REMARK 3 T33: 0.2315 T12: 0.0208 REMARK 3 T13: -0.0185 T23: 0.0933 REMARK 3 L TENSOR REMARK 3 L11: 1.7211 L22: 1.1231 REMARK 3 L33: 1.1606 L12: 0.2375 REMARK 3 L13: 0.0487 L23: 0.0154 REMARK 3 S TENSOR REMARK 3 S11: -0.0536 S12: 0.4111 S13: 0.1243 REMARK 3 S21: -0.1339 S22: -0.0628 S23: -0.0198 REMARK 3 S31: -0.0210 S32: -0.0411 S33: 0.1217 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 220 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.9244 25.4336-110.8309 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.6946 REMARK 3 T33: 0.2135 T12: -0.0041 REMARK 3 T13: 0.0401 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 2.9402 L22: 1.0854 REMARK 3 L33: 2.3046 L12: 0.4694 REMARK 3 L13: 0.9496 L23: 0.0866 REMARK 3 S TENSOR REMARK 3 S11: -0.0622 S12: 0.3700 S13: -0.0199 REMARK 3 S21: -0.0612 S22: -0.0156 S23: 0.0879 REMARK 3 S31: 0.0499 S32: -0.3637 S33: 0.1001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TD9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : PH 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 708 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 708 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40898 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: PDB ENTRY 4ZCW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS, PH 6.5, 200 MM REMARK 280 AMMONIUM ACETATE, 20% W/V PEG3350, CRYO-SOAK IN SOLUTION REMARK 280 CONTAINING 100 MM BIS-TRIS, PH 6.5, 200 MM AMMONIUM ACETATE, 35% REMARK 280 W/V PEG3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.43400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.96100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.43400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.96100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS B 435 REMARK 465 HIS B 436 REMARK 465 HIS B 437 REMARK 465 HIS B 438 REMARK 465 HIS B 439 REMARK 465 HIS B 440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 245 OE1 GLU A 293 1.50 REMARK 500 OH TYR A 200 OE1 GLU A 222 2.13 REMARK 500 OD2 ASP A 98 OG1 THR A 100 2.15 REMARK 500 OE2 GLU B 225 OH TYR B 287 2.19 REMARK 500 OH TYR B 200 OE1 GLU B 222 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 320 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -167.39 -120.59 REMARK 500 SER A 141 -33.03 -134.35 REMARK 500 ASN A 216 83.61 -67.01 REMARK 500 PRO A 267 -6.13 -58.75 REMARK 500 VAL A 322 38.87 34.41 REMARK 500 THR A 395 41.53 -145.51 REMARK 500 PRO A 398 47.92 -74.53 REMARK 500 ARG A 400 124.64 72.37 REMARK 500 VAL B 152 -39.87 -133.77 REMARK 500 HIS B 158 58.29 -96.24 REMARK 500 ARG B 253 -101.58 -109.29 REMARK 500 LYS B 262 55.85 37.65 REMARK 500 ASP B 318 -81.70 -122.37 REMARK 500 VAL B 322 40.82 37.77 REMARK 500 THR B 376 -168.47 -124.80 REMARK 500 ARG B 400 125.65 70.78 REMARK 500 ASN B 427 44.49 -100.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 245 OD1 REMARK 620 2 GLU A 293 OE1 41.6 REMARK 620 3 ASP A 318 OD1 146.5 104.8 REMARK 620 4 HOH A 607 O 101.2 92.8 77.2 REMARK 620 5 HOH A 608 O 116.0 153.4 96.5 76.3 REMARK 620 6 HOH A 636 O 98.0 113.0 95.9 154.2 79.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 245 OD2 REMARK 620 2 GLU B 293 OE2 67.7 REMARK 620 3 ASP B 318 OD1 146.9 83.5 REMARK 620 4 HOH B 604 O 80.3 70.0 74.5 REMARK 620 5 HOH B 605 O 100.4 154.6 99.1 86.2 REMARK 620 6 HOH B 638 O 113.1 119.7 95.0 165.3 85.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 502 DBREF 5TD9 A 1 434 UNP P09104 ENOG_HUMAN 1 434 DBREF 5TD9 B 1 434 UNP P09104 ENOG_HUMAN 1 434 SEQADV 5TD9 HIS A 435 UNP P09104 EXPRESSION TAG SEQADV 5TD9 HIS A 436 UNP P09104 EXPRESSION TAG SEQADV 5TD9 HIS A 437 UNP P09104 EXPRESSION TAG SEQADV 5TD9 HIS A 438 UNP P09104 EXPRESSION TAG SEQADV 5TD9 HIS A 439 UNP P09104 EXPRESSION TAG SEQADV 5TD9 HIS A 440 UNP P09104 EXPRESSION TAG SEQADV 5TD9 HIS B 435 UNP P09104 EXPRESSION TAG SEQADV 5TD9 HIS B 436 UNP P09104 EXPRESSION TAG SEQADV 5TD9 HIS B 437 UNP P09104 EXPRESSION TAG SEQADV 5TD9 HIS B 438 UNP P09104 EXPRESSION TAG SEQADV 5TD9 HIS B 439 UNP P09104 EXPRESSION TAG SEQADV 5TD9 HIS B 440 UNP P09104 EXPRESSION TAG SEQRES 1 A 440 MET SER ILE GLU LYS ILE TRP ALA ARG GLU ILE LEU ASP SEQRES 2 A 440 SER ARG GLY ASN PRO THR VAL GLU VAL ASP LEU TYR THR SEQRES 3 A 440 ALA LYS GLY LEU PHE ARG ALA ALA VAL PRO SER GLY ALA SEQRES 4 A 440 SER THR GLY ILE TYR GLU ALA LEU GLU LEU ARG ASP GLY SEQRES 5 A 440 ASP LYS GLN ARG TYR LEU GLY LYS GLY VAL LEU LYS ALA SEQRES 6 A 440 VAL ASP HIS ILE ASN SER THR ILE ALA PRO ALA LEU ILE SEQRES 7 A 440 SER SER GLY LEU SER VAL VAL GLU GLN GLU LYS LEU ASP SEQRES 8 A 440 ASN LEU MET LEU GLU LEU ASP GLY THR GLU ASN LYS SER SEQRES 9 A 440 LYS PHE GLY ALA ASN ALA ILE LEU GLY VAL SER LEU ALA SEQRES 10 A 440 VAL CYS LYS ALA GLY ALA ALA GLU ARG GLU LEU PRO LEU SEQRES 11 A 440 TYR ARG HIS ILE ALA GLN LEU ALA GLY ASN SER ASP LEU SEQRES 12 A 440 ILE LEU PRO VAL PRO ALA PHE ASN VAL ILE ASN GLY GLY SEQRES 13 A 440 SER HIS ALA GLY ASN LYS LEU ALA MET GLN GLU PHE MET SEQRES 14 A 440 ILE LEU PRO VAL GLY ALA GLU SER PHE ARG ASP ALA MET SEQRES 15 A 440 ARG LEU GLY ALA GLU VAL TYR HIS THR LEU LYS GLY VAL SEQRES 16 A 440 ILE LYS ASP LYS TYR GLY LYS ASP ALA THR ASN VAL GLY SEQRES 17 A 440 ASP GLU GLY GLY PHE ALA PRO ASN ILE LEU GLU ASN SER SEQRES 18 A 440 GLU ALA LEU GLU LEU VAL LYS GLU ALA ILE ASP LYS ALA SEQRES 19 A 440 GLY TYR THR GLU LYS ILE VAL ILE GLY MET ASP VAL ALA SEQRES 20 A 440 ALA SER GLU PHE TYR ARG ASP GLY LYS TYR ASP LEU ASP SEQRES 21 A 440 PHE LYS SER PRO THR ASP PRO SER ARG TYR ILE THR GLY SEQRES 22 A 440 ASP GLN LEU GLY ALA LEU TYR GLN ASP PHE VAL ARG ASP SEQRES 23 A 440 TYR PRO VAL VAL SER ILE GLU ASP PRO PHE ASP GLN ASP SEQRES 24 A 440 ASP TRP ALA ALA TRP SER LYS PHE THR ALA ASN VAL GLY SEQRES 25 A 440 ILE GLN ILE VAL GLY ASP ASP LEU THR VAL THR ASN PRO SEQRES 26 A 440 LYS ARG ILE GLU ARG ALA VAL GLU GLU LYS ALA CYS ASN SEQRES 27 A 440 CYS LEU LEU LEU LYS VAL ASN GLN ILE GLY SER VAL THR SEQRES 28 A 440 GLU ALA ILE GLN ALA CYS LYS LEU ALA GLN GLU ASN GLY SEQRES 29 A 440 TRP GLY VAL MET VAL SER HIS ARG SER GLY GLU THR GLU SEQRES 30 A 440 ASP THR PHE ILE ALA ASP LEU VAL VAL GLY LEU CYS THR SEQRES 31 A 440 GLY GLN ILE LYS THR GLY ALA PRO CYS ARG SER GLU ARG SEQRES 32 A 440 LEU ALA LYS TYR ASN GLN LEU MET ARG ILE GLU GLU GLU SEQRES 33 A 440 LEU GLY ASP GLU ALA ARG PHE ALA GLY HIS ASN PHE ARG SEQRES 34 A 440 ASN PRO SER VAL LEU HIS HIS HIS HIS HIS HIS SEQRES 1 B 440 MET SER ILE GLU LYS ILE TRP ALA ARG GLU ILE LEU ASP SEQRES 2 B 440 SER ARG GLY ASN PRO THR VAL GLU VAL ASP LEU TYR THR SEQRES 3 B 440 ALA LYS GLY LEU PHE ARG ALA ALA VAL PRO SER GLY ALA SEQRES 4 B 440 SER THR GLY ILE TYR GLU ALA LEU GLU LEU ARG ASP GLY SEQRES 5 B 440 ASP LYS GLN ARG TYR LEU GLY LYS GLY VAL LEU LYS ALA SEQRES 6 B 440 VAL ASP HIS ILE ASN SER THR ILE ALA PRO ALA LEU ILE SEQRES 7 B 440 SER SER GLY LEU SER VAL VAL GLU GLN GLU LYS LEU ASP SEQRES 8 B 440 ASN LEU MET LEU GLU LEU ASP GLY THR GLU ASN LYS SER SEQRES 9 B 440 LYS PHE GLY ALA ASN ALA ILE LEU GLY VAL SER LEU ALA SEQRES 10 B 440 VAL CYS LYS ALA GLY ALA ALA GLU ARG GLU LEU PRO LEU SEQRES 11 B 440 TYR ARG HIS ILE ALA GLN LEU ALA GLY ASN SER ASP LEU SEQRES 12 B 440 ILE LEU PRO VAL PRO ALA PHE ASN VAL ILE ASN GLY GLY SEQRES 13 B 440 SER HIS ALA GLY ASN LYS LEU ALA MET GLN GLU PHE MET SEQRES 14 B 440 ILE LEU PRO VAL GLY ALA GLU SER PHE ARG ASP ALA MET SEQRES 15 B 440 ARG LEU GLY ALA GLU VAL TYR HIS THR LEU LYS GLY VAL SEQRES 16 B 440 ILE LYS ASP LYS TYR GLY LYS ASP ALA THR ASN VAL GLY SEQRES 17 B 440 ASP GLU GLY GLY PHE ALA PRO ASN ILE LEU GLU ASN SER SEQRES 18 B 440 GLU ALA LEU GLU LEU VAL LYS GLU ALA ILE ASP LYS ALA SEQRES 19 B 440 GLY TYR THR GLU LYS ILE VAL ILE GLY MET ASP VAL ALA SEQRES 20 B 440 ALA SER GLU PHE TYR ARG ASP GLY LYS TYR ASP LEU ASP SEQRES 21 B 440 PHE LYS SER PRO THR ASP PRO SER ARG TYR ILE THR GLY SEQRES 22 B 440 ASP GLN LEU GLY ALA LEU TYR GLN ASP PHE VAL ARG ASP SEQRES 23 B 440 TYR PRO VAL VAL SER ILE GLU ASP PRO PHE ASP GLN ASP SEQRES 24 B 440 ASP TRP ALA ALA TRP SER LYS PHE THR ALA ASN VAL GLY SEQRES 25 B 440 ILE GLN ILE VAL GLY ASP ASP LEU THR VAL THR ASN PRO SEQRES 26 B 440 LYS ARG ILE GLU ARG ALA VAL GLU GLU LYS ALA CYS ASN SEQRES 27 B 440 CYS LEU LEU LEU LYS VAL ASN GLN ILE GLY SER VAL THR SEQRES 28 B 440 GLU ALA ILE GLN ALA CYS LYS LEU ALA GLN GLU ASN GLY SEQRES 29 B 440 TRP GLY VAL MET VAL SER HIS ARG SER GLY GLU THR GLU SEQRES 30 B 440 ASP THR PHE ILE ALA ASP LEU VAL VAL GLY LEU CYS THR SEQRES 31 B 440 GLY GLN ILE LYS THR GLY ALA PRO CYS ARG SER GLU ARG SEQRES 32 B 440 LEU ALA LYS TYR ASN GLN LEU MET ARG ILE GLU GLU GLU SEQRES 33 B 440 LEU GLY ASP GLU ALA ARG PHE ALA GLY HIS ASN PHE ARG SEQRES 34 B 440 ASN PRO SER VAL LEU HIS HIS HIS HIS HIS HIS HET MG A 501 1 HET CL A 502 1 HET MG B 501 1 HET CL B 502 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 MG 2(MG 2+) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *86(H2 O) HELIX 1 AA1 ARG A 56 LYS A 60 5 5 HELIX 2 AA2 VAL A 62 THR A 72 1 11 HELIX 3 AA3 THR A 72 SER A 80 1 9 HELIX 4 AA4 GLU A 86 GLY A 99 1 14 HELIX 5 AA5 GLY A 107 ARG A 126 1 20 HELIX 6 AA6 PRO A 129 ALA A 138 1 10 HELIX 7 AA7 GLY A 156 ALA A 159 5 4 HELIX 8 AA8 SER A 177 GLY A 201 1 25 HELIX 9 AA9 LYS A 202 THR A 205 5 4 HELIX 10 AB1 GLU A 219 GLY A 235 1 17 HELIX 11 AB2 ALA A 247 GLU A 250 5 4 HELIX 12 AB3 THR A 272 TYR A 287 1 16 HELIX 13 AB4 ASP A 300 VAL A 311 1 12 HELIX 14 AB5 ASN A 324 GLU A 334 1 11 HELIX 15 AB6 LYS A 343 GLY A 348 1 6 HELIX 16 AB7 SER A 349 ASN A 363 1 15 HELIX 17 AB8 THR A 379 LEU A 388 1 10 HELIX 18 AB9 ARG A 400 GLY A 418 1 19 HELIX 19 AC1 ASP A 419 ALA A 421 5 3 HELIX 20 AC2 ALA A 424 PHE A 428 5 5 HELIX 21 AC3 ASN A 430 LEU A 434 5 5 HELIX 22 AC4 ARG B 56 LYS B 60 5 5 HELIX 23 AC5 VAL B 62 THR B 72 1 11 HELIX 24 AC6 THR B 72 GLY B 81 1 10 HELIX 25 AC7 GLU B 86 GLY B 99 1 14 HELIX 26 AC8 GLY B 107 ARG B 126 1 20 HELIX 27 AC9 PRO B 129 ALA B 138 1 10 HELIX 28 AD1 GLY B 156 ALA B 159 5 4 HELIX 29 AD2 SER B 177 GLY B 201 1 25 HELIX 30 AD3 LYS B 202 THR B 205 5 4 HELIX 31 AD4 GLU B 219 ALA B 234 1 16 HELIX 32 AD5 ALA B 247 TYR B 252 5 6 HELIX 33 AD6 ASP B 266 TYR B 270 5 5 HELIX 34 AD7 THR B 272 TYR B 287 1 16 HELIX 35 AD8 ASP B 300 ASN B 310 1 11 HELIX 36 AD9 ASN B 324 GLU B 334 1 11 HELIX 37 AE1 LYS B 343 GLY B 348 1 6 HELIX 38 AE2 SER B 349 ASN B 363 1 15 HELIX 39 AE3 THR B 379 LEU B 388 1 10 HELIX 40 AE4 ARG B 400 GLY B 418 1 19 HELIX 41 AE5 ASP B 419 ALA B 421 5 3 HELIX 42 AE6 ALA B 424 PHE B 428 5 5 HELIX 43 AE7 ASN B 430 LEU B 434 5 5 SHEET 1 AA1 3 LYS A 5 LEU A 12 0 SHEET 2 AA1 3 PRO A 18 THR A 26 -1 O TYR A 25 N LYS A 5 SHEET 3 AA1 3 GLY A 29 ALA A 34 -1 O ALA A 33 N VAL A 22 SHEET 1 AA2 9 VAL A 147 PRO A 148 0 SHEET 2 AA2 9 GLN A 392 LYS A 394 1 O ILE A 393 N VAL A 147 SHEET 3 AA2 9 GLY A 366 SER A 370 1 N VAL A 369 O LYS A 394 SHEET 4 AA2 9 CYS A 339 LEU A 342 1 N LEU A 340 O MET A 368 SHEET 5 AA2 9 GLN A 314 GLY A 317 1 N GLY A 317 O CYS A 339 SHEET 6 AA2 9 VAL A 289 GLU A 293 1 N VAL A 290 O GLN A 314 SHEET 7 AA2 9 VAL A 241 ASP A 245 1 N MET A 244 O SER A 291 SHEET 8 AA2 9 GLU A 167 LEU A 171 -1 N MET A 169 O GLY A 243 SHEET 9 AA2 9 PHE A 150 ASN A 154 -1 N ILE A 153 O PHE A 168 SHEET 1 AA3 2 TYR A 252 ARG A 253 0 SHEET 2 AA3 2 LYS A 256 TYR A 257 -1 O LYS A 256 N ARG A 253 SHEET 1 AA4 3 LYS B 5 LEU B 12 0 SHEET 2 AA4 3 PRO B 18 THR B 26 -1 O ASP B 23 N TRP B 7 SHEET 3 AA4 3 GLY B 29 ALA B 34 -1 O ALA B 33 N VAL B 22 SHEET 1 AA5 9 VAL B 147 PRO B 148 0 SHEET 2 AA5 9 GLN B 392 LYS B 394 1 O ILE B 393 N VAL B 147 SHEET 3 AA5 9 GLY B 366 SER B 370 1 N VAL B 369 O LYS B 394 SHEET 4 AA5 9 CYS B 339 LEU B 342 1 N LEU B 340 O GLY B 366 SHEET 5 AA5 9 GLN B 314 GLY B 317 1 N GLY B 317 O CYS B 339 SHEET 6 AA5 9 VAL B 289 GLU B 293 1 N ILE B 292 O VAL B 316 SHEET 7 AA5 9 VAL B 241 ASP B 245 1 N MET B 244 O GLU B 293 SHEET 8 AA5 9 GLU B 167 LEU B 171 -1 N MET B 169 O GLY B 243 SHEET 9 AA5 9 PHE B 150 ASN B 154 -1 N VAL B 152 O PHE B 168 LINK OD1 ASP A 245 MG MG A 501 1555 1555 2.14 LINK OE1 GLU A 293 MG MG A 501 1555 1555 2.08 LINK OD1 ASP A 318 MG MG A 501 1555 1555 2.10 LINK MG MG A 501 O HOH A 607 1555 1555 2.21 LINK MG MG A 501 O HOH A 608 1555 1555 2.21 LINK MG MG A 501 O HOH A 636 1555 1555 2.18 LINK OD2 ASP B 245 MG MG B 501 1555 1555 2.15 LINK OE2 GLU B 293 MG MG B 501 1555 1555 1.98 LINK OD1 ASP B 318 MG MG B 501 1555 1555 2.12 LINK MG MG B 501 O HOH B 604 1555 1555 2.36 LINK MG MG B 501 O HOH B 605 1555 1555 2.12 LINK MG MG B 501 O HOH B 638 1555 1555 2.37 SITE 1 AC1 6 ASP A 245 GLU A 293 ASP A 318 HOH A 607 SITE 2 AC1 6 HOH A 608 HOH A 636 SITE 1 AC2 2 LYS A 343 SER A 373 SITE 1 AC3 6 ASP B 245 GLU B 293 ASP B 318 HOH B 604 SITE 2 AC3 6 HOH B 605 HOH B 638 SITE 1 AC4 2 ARG B 372 SER B 373 CRYST1 68.319 112.868 119.922 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014637 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008339 0.00000