HEADER TRANSFERASE 20-SEP-16 5TDZ TITLE TEV CLEAVED HUMAN ATP CITRATE LYASE BOUND TO TARTRATE AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-CITRATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-425; COMPND 5 SYNONYM: ATP-CITRATE (PRO-S-)-LYASE,ACL,CITRATE CLEAVAGE ENZYME; COMPND 6 EC: 2.3.3.8; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ATP-CITRATE SYNTHASE; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 488-810; COMPND 12 SYNONYM: ATP-CITRATE (PRO-S-)-LYASE,ACL,CITRATE CLEAVAGE ENZYME; COMPND 13 EC: 2.3.3.8; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACLY; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ACLY; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TEV CLEAVED, ATP-GRASP FOLD, TARTRATE BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HU,M.E.FRASER REVDAT 2 16-AUG-17 5TDZ 1 JRNL REVDAT 1 09-AUG-17 5TDZ 0 JRNL AUTH J.HU,A.KOMAKULA,M.E.FRASER JRNL TITL BINDING OF HYDROXYCITRATE TO HUMAN ATP-CITRATE LYASE. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 660 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28777081 JRNL DOI 10.1107/S2059798317009871 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2152: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 61409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3958 - 5.6014 0.98 2889 149 0.1954 0.2215 REMARK 3 2 5.6014 - 4.4470 0.98 2794 133 0.1569 0.1771 REMARK 3 3 4.4470 - 3.8852 0.98 2728 137 0.1485 0.1822 REMARK 3 4 3.8852 - 3.5301 0.98 2725 130 0.1504 0.2034 REMARK 3 5 3.5301 - 3.2771 0.98 2682 129 0.1652 0.2160 REMARK 3 6 3.2771 - 3.0839 0.98 2670 151 0.1627 0.1913 REMARK 3 7 3.0839 - 2.9295 0.98 2657 141 0.1679 0.2471 REMARK 3 8 2.9295 - 2.8020 0.98 2638 165 0.1696 0.2303 REMARK 3 9 2.8020 - 2.6941 0.97 2685 123 0.1709 0.1900 REMARK 3 10 2.6941 - 2.6012 0.98 2637 149 0.1770 0.2551 REMARK 3 11 2.6012 - 2.5198 0.97 2635 140 0.1828 0.2224 REMARK 3 12 2.5198 - 2.4478 0.97 2605 141 0.1822 0.2504 REMARK 3 13 2.4478 - 2.3834 0.97 2633 146 0.1779 0.2557 REMARK 3 14 2.3834 - 2.3252 0.97 2576 159 0.1845 0.2159 REMARK 3 15 2.3252 - 2.2724 0.97 2654 129 0.1842 0.2761 REMARK 3 16 2.2724 - 2.2240 0.97 2550 137 0.2006 0.2869 REMARK 3 17 2.2240 - 2.1795 0.97 2635 129 0.2030 0.2638 REMARK 3 18 2.1795 - 2.1384 0.97 2573 145 0.2155 0.2765 REMARK 3 19 2.1384 - 2.1002 0.96 2626 124 0.2086 0.2581 REMARK 3 20 2.1002 - 2.0646 0.96 2545 141 0.2269 0.3003 REMARK 3 21 2.0646 - 2.0313 0.96 2639 144 0.2324 0.2938 REMARK 3 22 2.0313 - 2.0000 0.96 2560 131 0.2468 0.2818 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 6021 REMARK 3 ANGLE : 1.123 8151 REMARK 3 CHIRALITY : 0.063 902 REMARK 3 PLANARITY : 0.007 1069 REMARK 3 DIHEDRAL : 15.312 3607 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61452 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% P3350, 100 MM TRISHCL PH 8.8, 100 REMARK 280 MM AMMONIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.83600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.79700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.14550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 97.79700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.83600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.14550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 137 REMARK 465 GLY A 138 REMARK 465 GLY A 139 REMARK 465 VAL A 140 REMARK 465 ASP A 141 REMARK 465 VAL A 142 REMARK 465 GLY A 143 REMARK 465 ASP A 144 REMARK 465 VAL A 145 REMARK 465 ASP A 146 REMARK 465 ALA A 147 REMARK 465 LYS A 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 487 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS B 732 O HOH B 1006 1.47 REMARK 500 HOB3 ADP A 902 O HOH A 1017 1.48 REMARK 500 HG1 THR B 534 O HOH B 1003 1.51 REMARK 500 HH11 ARG B 691 O HOH B 1007 1.59 REMARK 500 HH TYR A 307 O HOH A 1007 1.60 REMARK 500 O HOH A 1230 O HOH B 1030 2.15 REMARK 500 O HOH A 1081 O HOH A 1197 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HIS A 168 HO1 TRS B 901 3655 1.57 REMARK 500 O HOH A 1173 O HOH A 1195 4555 2.10 REMARK 500 O HOH A 1132 O HOH B 1205 3555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 723 CG GLU B 723 CD 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 61 29.60 -143.24 REMARK 500 LEU A 269 -63.11 -93.37 REMARK 500 SER A 343 -168.78 -79.62 REMARK 500 PHE A 347 -5.02 -149.28 REMARK 500 LYS B 488 -132.66 -113.77 REMARK 500 CYS B 633 -58.37 -122.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 203 O REMARK 620 2 ASP A 216 OD2 88.5 REMARK 620 3 ADP A 902 O1B 169.9 98.8 REMARK 620 4 ADP A 902 O2A 86.1 87.1 87.3 REMARK 620 5 HOH A1078 O 103.7 83.9 84.1 166.4 REMARK 620 6 HOH A1121 O 89.1 163.4 81.9 76.4 112.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TE1 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AMINO-TERMINAL PORTION OF HUMAN ACLY WAS REDESIGNED TO HAVE TEV REMARK 999 PROTEASE CLEAVAGE SITES BORDERING THE LINKER REGION. BOTH CLEAVAGE REMARK 999 SITES HAD THE SAME SEQUENCE, ENLYFQS, AND THESE RESIDUES WERE REMARK 999 SUBSTITUTED FOR RESIDUES 426-432 AND 481-487 OF ACLY. A HIS10-TAG REMARK 999 REPLACED RESIDUES 450-459 OF THE LINKER. THE PROTEIN WAS TERMINATED REMARK 999 AT RESIDUE 810. WHEN CLEAVED, THE PROTEIN WOULD CONSIST OF RESIDUES REMARK 999 2-425-ENLYFQ AND S-488-810 OF HACLY. DBREF 5TDZ A 1 425 UNP P53396 ACLY_HUMAN 1 425 DBREF 5TDZ B 488 810 UNP P53396 ACLY_HUMAN 488 810 SEQADV 5TDZ GLU A 426 UNP P53396 SEE REMARK 999 SEQADV 5TDZ ASN A 427 UNP P53396 SEE REMARK 999 SEQADV 5TDZ LEU A 428 UNP P53396 SEE REMARK 999 SEQADV 5TDZ TYR A 429 UNP P53396 SEE REMARK 999 SEQADV 5TDZ PHE A 430 UNP P53396 SEE REMARK 999 SEQADV 5TDZ GLN A 431 UNP P53396 SEE REMARK 999 SEQADV 5TDZ SER B 487 UNP P53396 SEE REMARK 999 SEQRES 1 A 431 MET SER ALA LYS ALA ILE SER GLU GLN THR GLY LYS GLU SEQRES 2 A 431 LEU LEU TYR LYS PHE ILE CYS THR THR SER ALA ILE GLN SEQRES 3 A 431 ASN ARG PHE LYS TYR ALA ARG VAL THR PRO ASP THR ASP SEQRES 4 A 431 TRP ALA ARG LEU LEU GLN ASP HIS PRO TRP LEU LEU SER SEQRES 5 A 431 GLN ASN LEU VAL VAL LYS PRO ASP GLN LEU ILE LYS ARG SEQRES 6 A 431 ARG GLY LYS LEU GLY LEU VAL GLY VAL ASN LEU THR LEU SEQRES 7 A 431 ASP GLY VAL LYS SER TRP LEU LYS PRO ARG LEU GLY GLN SEQRES 8 A 431 GLU ALA THR VAL GLY LYS ALA THR GLY PHE LEU LYS ASN SEQRES 9 A 431 PHE LEU ILE GLU PRO PHE VAL PRO HIS SER GLN ALA GLU SEQRES 10 A 431 GLU PHE TYR VAL CYS ILE TYR ALA THR ARG GLU GLY ASP SEQRES 11 A 431 TYR VAL LEU PHE HIS HIS GLU GLY GLY VAL ASP VAL GLY SEQRES 12 A 431 ASP VAL ASP ALA LYS ALA GLN LYS LEU LEU VAL GLY VAL SEQRES 13 A 431 ASP GLU LYS LEU ASN PRO GLU ASP ILE LYS LYS HIS LEU SEQRES 14 A 431 LEU VAL HIS ALA PRO GLU ASP LYS LYS GLU ILE LEU ALA SEQRES 15 A 431 SER PHE ILE SER GLY LEU PHE ASN PHE TYR GLU ASP LEU SEQRES 16 A 431 TYR PHE THR TYR LEU GLU ILE ASN PRO LEU VAL VAL THR SEQRES 17 A 431 LYS ASP GLY VAL TYR VAL LEU ASP LEU ALA ALA LYS VAL SEQRES 18 A 431 ASP ALA THR ALA ASP TYR ILE CYS LYS VAL LYS TRP GLY SEQRES 19 A 431 ASP ILE GLU PHE PRO PRO PRO PHE GLY ARG GLU ALA TYR SEQRES 20 A 431 PRO GLU GLU ALA TYR ILE ALA ASP LEU ASP ALA LYS SER SEQRES 21 A 431 GLY ALA SER LEU LYS LEU THR LEU LEU ASN PRO LYS GLY SEQRES 22 A 431 ARG ILE TRP THR MET VAL ALA GLY GLY GLY ALA SER VAL SEQRES 23 A 431 VAL TYR SER ASP THR ILE CYS ASP LEU GLY GLY VAL ASN SEQRES 24 A 431 GLU LEU ALA ASN TYR GLY GLU TYR SER GLY ALA PRO SER SEQRES 25 A 431 GLU GLN GLN THR TYR ASP TYR ALA LYS THR ILE LEU SER SEQRES 26 A 431 LEU MET THR ARG GLU LYS HIS PRO ASP GLY LYS ILE LEU SEQRES 27 A 431 ILE ILE GLY GLY SER ILE ALA ASN PHE THR ASN VAL ALA SEQRES 28 A 431 ALA THR PHE LYS GLY ILE VAL ARG ALA ILE ARG ASP TYR SEQRES 29 A 431 GLN GLY PRO LEU LYS GLU HIS GLU VAL THR ILE PHE VAL SEQRES 30 A 431 ARG ARG GLY GLY PRO ASN TYR GLN GLU GLY LEU ARG VAL SEQRES 31 A 431 MET GLY GLU VAL GLY LYS THR THR GLY ILE PRO ILE HIS SEQRES 32 A 431 VAL PHE GLY THR GLU THR HIS MET THR ALA ILE VAL GLY SEQRES 33 A 431 MET ALA LEU GLY HIS ARG PRO ILE PRO GLU ASN LEU TYR SEQRES 34 A 431 PHE GLN SEQRES 1 B 324 SER LYS SER THR THR LEU PHE SER ARG HIS THR LYS ALA SEQRES 2 B 324 ILE VAL TRP GLY MET GLN THR ARG ALA VAL GLN GLY MET SEQRES 3 B 324 LEU ASP PHE ASP TYR VAL CYS SER ARG ASP GLU PRO SER SEQRES 4 B 324 VAL ALA ALA MET VAL TYR PRO PHE THR GLY ASP HIS LYS SEQRES 5 B 324 GLN LYS PHE TYR TRP GLY HIS LYS GLU ILE LEU ILE PRO SEQRES 6 B 324 VAL PHE LYS ASN MET ALA ASP ALA MET ARG LYS HIS PRO SEQRES 7 B 324 GLU VAL ASP VAL LEU ILE ASN PHE ALA SER LEU ARG SER SEQRES 8 B 324 ALA TYR ASP SER THR MET GLU THR MET ASN TYR ALA GLN SEQRES 9 B 324 ILE ARG THR ILE ALA ILE ILE ALA GLU GLY ILE PRO GLU SEQRES 10 B 324 ALA LEU THR ARG LYS LEU ILE LYS LYS ALA ASP GLN LYS SEQRES 11 B 324 GLY VAL THR ILE ILE GLY PRO ALA THR VAL GLY GLY ILE SEQRES 12 B 324 LYS PRO GLY CYS PHE LYS ILE GLY ASN THR GLY GLY MET SEQRES 13 B 324 LEU ASP ASN ILE LEU ALA SER LYS LEU TYR ARG PRO GLY SEQRES 14 B 324 SER VAL ALA TYR VAL SER ARG SER GLY GLY MET SER ASN SEQRES 15 B 324 GLU LEU ASN ASN ILE ILE SER ARG THR THR ASP GLY VAL SEQRES 16 B 324 TYR GLU GLY VAL ALA ILE GLY GLY ASP ARG TYR PRO GLY SEQRES 17 B 324 SER THR PHE MET ASP HIS VAL LEU ARG TYR GLN ASP THR SEQRES 18 B 324 PRO GLY VAL LYS MET ILE VAL VAL LEU GLY GLU ILE GLY SEQRES 19 B 324 GLY THR GLU GLU TYR LYS ILE CYS ARG GLY ILE LYS GLU SEQRES 20 B 324 GLY ARG LEU THR LYS PRO ILE VAL CYS TRP CYS ILE GLY SEQRES 21 B 324 THR CYS ALA THR MET PHE SER SER GLU VAL GLN PHE GLY SEQRES 22 B 324 NEP ALA GLY ALA CYS ALA ASN GLN ALA SER GLU THR ALA SEQRES 23 B 324 VAL ALA LYS ASN GLN ALA LEU LYS GLU ALA GLY VAL PHE SEQRES 24 B 324 VAL PRO ARG SER PHE ASP GLU LEU GLY GLU ILE ILE GLN SEQRES 25 B 324 SER VAL TYR GLU ASP LEU VAL ALA ASN GLY VAL ILE MODRES 5TDZ NEP B 760 HIS MODIFIED RESIDUE HET NEP B 760 19 HET TLA A 901 16 HET ADP A 902 42 HET MG A 903 1 HET PO4 A 904 5 HET ADN A 905 32 HET GOL A 906 14 HET PGE A 907 24 HET TRS B 901 20 HET GOL B 902 14 HET PGE B 903 24 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM TLA L(+)-TARTARIC ACID HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM ADN ADENOSINE HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 2 NEP C6 H10 N3 O5 P FORMUL 3 TLA C4 H6 O6 FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 MG MG 2+ FORMUL 6 PO4 O4 P 3- FORMUL 7 ADN C10 H13 N5 O4 FORMUL 8 GOL 2(C3 H8 O3) FORMUL 9 PGE 2(C6 H14 O4) FORMUL 10 TRS C4 H12 N O3 1+ FORMUL 13 HOH *506(H2 O) HELIX 1 AA1 SER A 7 ILE A 19 1 13 HELIX 2 AA2 ASP A 39 HIS A 47 1 9 HELIX 3 AA3 PRO A 48 SER A 52 5 5 HELIX 4 AA4 THR A 77 LYS A 86 1 10 HELIX 5 AA5 SER A 114 ALA A 116 5 3 HELIX 6 AA6 ASN A 161 LEU A 169 1 9 HELIX 7 AA7 PRO A 174 ASP A 176 5 3 HELIX 8 AA8 LYS A 177 LEU A 195 1 19 HELIX 9 AA9 ALA A 225 GLY A 234 1 10 HELIX 10 AB1 TYR A 247 SER A 260 1 14 HELIX 11 AB2 GLY A 281 LEU A 295 1 15 HELIX 12 AB3 GLY A 296 GLU A 300 5 5 HELIX 13 AB4 SER A 312 MET A 327 1 16 HELIX 14 AB5 ASN A 349 TYR A 364 1 16 HELIX 15 AB6 TYR A 364 HIS A 371 1 8 HELIX 16 AB7 ASN A 383 GLY A 399 1 17 HELIX 17 AB8 THR A 412 LEU A 419 1 8 HELIX 18 AB9 PRO A 425 TYR A 429 5 5 HELIX 19 AC1 GLN B 505 CYS B 519 1 15 HELIX 20 AC2 ASN B 555 HIS B 563 1 9 HELIX 21 AC3 SER B 574 MET B 586 1 13 HELIX 22 AC4 PRO B 602 GLY B 617 1 16 HELIX 23 AC5 MET B 642 SER B 649 1 8 HELIX 24 AC6 SER B 663 THR B 678 1 16 HELIX 25 AC7 THR B 696 ASP B 706 1 11 HELIX 26 AC8 GLU B 724 GLU B 733 1 10 HELIX 27 AC9 CYS B 748 PHE B 752 5 5 HELIX 28 AD1 GLN B 767 GLU B 770 5 4 HELIX 29 AD2 THR B 771 GLY B 783 1 13 HELIX 30 AD3 SER B 789 ASP B 791 5 3 HELIX 31 AD4 GLU B 792 ASN B 807 1 16 SHEET 1 AA1 6 ALA A 3 ILE A 6 0 SHEET 2 AA1 6 ALA A 218 ASP A 222 -1 O VAL A 221 N LYS A 4 SHEET 3 AA1 6 PHE A 197 THR A 208 -1 N GLU A 201 O ALA A 218 SHEET 4 AA1 6 GLU A 118 THR A 126 -1 N VAL A 121 O ILE A 202 SHEET 5 AA1 6 GLY A 129 HIS A 135 -1 O LEU A 133 N CYS A 122 SHEET 6 AA1 6 GLN A 150 GLY A 155 -1 O GLN A 150 N PHE A 134 SHEET 1 AA2 4 ALA A 3 ILE A 6 0 SHEET 2 AA2 4 ALA A 218 ASP A 222 -1 O VAL A 221 N LYS A 4 SHEET 3 AA2 4 PHE A 197 THR A 208 -1 N GLU A 201 O ALA A 218 SHEET 4 AA2 4 GLY A 211 VAL A 214 -1 O TYR A 213 N VAL A 206 SHEET 1 AA3 4 ALA A 32 VAL A 34 0 SHEET 2 AA3 4 PHE A 105 PRO A 109 -1 O PHE A 105 N VAL A 34 SHEET 3 AA3 4 LEU A 55 PRO A 59 -1 N LYS A 58 O LEU A 106 SHEET 4 AA3 4 GLY A 73 LEU A 76 -1 O GLY A 73 N VAL A 57 SHEET 1 AA4 2 GLU A 92 VAL A 95 0 SHEET 2 AA4 2 ALA A 98 PHE A 101 -1 O GLY A 100 N ALA A 93 SHEET 1 AA5 3 SER A 263 LEU A 268 0 SHEET 2 AA5 3 ASN A 303 SER A 308 -1 O GLU A 306 N LYS A 265 SHEET 3 AA5 3 VAL A 279 ALA A 280 1 N VAL A 279 O TYR A 307 SHEET 1 AA6 4 ILE A 275 THR A 277 0 SHEET 2 AA6 4 LYS A 336 ILE A 340 1 O ILE A 337 N TRP A 276 SHEET 3 AA6 4 VAL A 373 ARG A 378 1 O PHE A 376 N ILE A 340 SHEET 4 AA6 4 ILE A 402 PHE A 405 1 O HIS A 403 N VAL A 377 SHEET 1 AA7 7 HIS B 537 TRP B 543 0 SHEET 2 AA7 7 LYS B 546 PHE B 553 -1 O LYS B 546 N TRP B 543 SHEET 3 AA7 7 VAL B 526 VAL B 530 1 N MET B 529 O PHE B 553 SHEET 4 AA7 7 ALA B 499 TRP B 502 1 N ALA B 499 O ALA B 527 SHEET 5 AA7 7 VAL B 568 ASN B 571 1 O ILE B 570 N TRP B 502 SHEET 6 AA7 7 THR B 593 ILE B 596 1 O ALA B 595 N ASN B 571 SHEET 7 AA7 7 THR B 619 ILE B 621 1 O THR B 619 N ILE B 594 SHEET 1 AA8 6 PHE B 634 LYS B 635 0 SHEET 2 AA8 6 GLY B 628 LYS B 630 -1 N LYS B 630 O PHE B 634 SHEET 3 AA8 6 VAL B 681 ALA B 686 -1 O GLY B 684 N ILE B 629 SHEET 4 AA8 6 VAL B 657 SER B 661 1 N VAL B 657 O TYR B 682 SHEET 5 AA8 6 MET B 712 GLU B 718 1 O VAL B 714 N ALA B 658 SHEET 6 AA8 6 ILE B 740 ILE B 745 1 O VAL B 741 N VAL B 715 LINK O ASN A 203 MG MG A 903 1555 1555 2.18 LINK OD2 ASP A 216 MG MG A 903 1555 1555 2.07 LINK C GLY B 759 N NEP B 760 1555 1555 1.33 LINK C NEP B 760 N ALA B 761 1555 1555 1.33 LINK O1B ADP A 902 MG MG A 903 1555 1555 1.90 LINK O2A ADP A 902 MG MG A 903 1555 1555 2.29 LINK MG MG A 903 O HOH A1078 1555 1555 2.09 LINK MG MG A 903 O HOH A1121 1555 1555 2.31 CISPEP 1 ASN A 203 PRO A 204 0 5.26 CISPEP 2 GLY B 622 PRO B 623 0 4.43 SITE 1 AC1 11 SER A 308 GLY A 309 ALA A 345 ASN A 346 SITE 2 AC1 11 PHE A 347 THR A 348 ARG A 379 PO4 A 904 SITE 3 AC1 11 HOH A1002 HOH A1049 GLY B 665 SITE 1 AC2 18 VAL A 56 LYS A 58 ARG A 65 ARG A 66 SITE 2 AC2 18 GLY A 67 PRO A 109 PHE A 110 VAL A 111 SITE 3 AC2 18 GLU A 118 ASN A 203 PRO A 204 LEU A 215 SITE 4 AC2 18 ASP A 216 MG A 903 HOH A1012 HOH A1017 SITE 5 AC2 18 HOH A1078 HOH A1121 SITE 1 AC3 5 ASN A 203 ASP A 216 ADP A 902 HOH A1078 SITE 2 AC3 5 HOH A1121 SITE 1 AC4 10 GLY A 281 GLY A 282 GLY A 283 TLA A 901 SITE 2 AC4 10 HOH A1040 SER B 663 GLY B 664 GLY B 665 SITE 3 AC4 10 NEP B 760 HOH B1030 SITE 1 AC5 6 ARG A 33 ASP A 39 ARG A 42 LEU A 43 SITE 2 AC5 6 GOL A 906 HOH A1006 SITE 1 AC6 4 ARG A 33 THR A 35 THR A 38 ADN A 905 SITE 1 AC7 6 TYR A 124 TYR A 131 LYS A 151 TYR B 517 SITE 2 AC7 6 SER B 520 ARG B 521 SITE 1 AC8 11 LYS A 151 LEU A 152 HIS A 168 HOH A1072 SITE 2 AC8 11 CYS B 519 GLY B 632 TYR B 652 PRO B 654 SITE 3 AC8 11 HOH B1013 HOH B1016 HOH B1084 SITE 1 AC9 8 HIS A 410 ILE B 673 PHE B 790 ASP B 791 SITE 2 AC9 8 LEU B 793 GLY B 794 HOH B1025 HOH B1126 SITE 1 AD1 5 VAL A 156 GLU A 193 TYR A 196 LEU B 605 SITE 2 AD1 5 LYS B 608 CRYST1 55.672 84.291 195.594 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017963 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005113 0.00000